mRNA_H-elongata_contig54996.12904.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: D8LCY5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY5_ECTSI) HSP 1 Score: 340 bits (873), Expect = 7.590e-115 Identity = 195/287 (67.94%), Postives = 220/287 (76.66%), Query Frame = 1
Query: 1 RDGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTDLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKSGEGVTRGYGLAALANACAHPVLAGRAKELGALELLRICL----------------DRPVDFHVGRFQQTKTAFARLNGIGPGAG------DLEEGG 795
RDGS LPA+QKLLQLAYSED D+QL+AVMGISKMIER + SSFGPLCHTLSRLAAS+ RA+VAYAARGIK+LVL+D LR QATVAGIPSVLAAALREWEDD PCLRE+LGALQTLC D ATVL VV+AG L VLELLD++++ELR+LATA AANVL++SDSLLLTN+ECID SD M LL+AVKS +G R YGLAALANACAHPVLAG AKELGALELLR R + G+ Q+ +TA ARLNG G G D+EEGG
Sbjct: 13 RDGSIALPALQKLLQLAYSEDTDQQLQAVMGISKMIER-HPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAGALASVLELLDTSNMELRVLATAIAANVLSFSDSLLLTNEECIDGISDSMGILLDAVKSRDGAIRDYGLAALANACAHPVLAGCAKELGALELLRRNFLQDKVSTEASGRWRGGGRLLRSRFGQRQKAETAVARLNGAGFGGDGXXXXXDVEEGG 298
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A6H5L7F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F5_9PHAE) HSP 1 Score: 277 bits (709), Expect = 4.060e-91 Identity = 149/191 (78.01%), Postives = 168/191 (87.96%), Query Frame = 1
Query: 1 RDGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTDLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKS 573
RDGS LPA+QKLLQLAYSED D QL+AVMGISKMIER + + SSFGPLCHTLSRLAAS+ RA+VAYAARGIK+LVL+D LR QATVAGIPSVLAAALREWEDD PCLREVLGALQTLC D ATVL VV+AG L VLELLD++++E+R+LATATAANVL++SDSLLLTN+ECID SD M LL+AVKS
Sbjct: 13 RDGSIALPALQKLLQLAYSEDTDHQLQAVMGISKMIER-QPADASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREVLGALQTLCCDAATVLPVVDAGALASVLELLDTSNMEVRMLATATAANVLSFSDSLLLTNEECIDGVSDSMGVLLDAVKS 202
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: D8LCY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY3_ECTSI) HSP 1 Score: 271 bits (692), Expect = 4.840e-88 Identity = 150/234 (64.10%), Postives = 181/234 (77.35%), Query Frame = 1
Query: 1 RDGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTDLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKSGE--GVTRGYGLAALANACAHPVLAGRAKELGALELLRICLDR 696
RD ++LPA+Q LLQLA++ D D Q +A MGIS M++R R + SSFGPLCHTLSRL AS+ +A+VAYAAR IKILVLDD LR QA AGIPSVLA AL+ E DT CLRE+LGALQTLCYD TVL+V+ G LG VLELL + +LEL+IL+ A AANVL++SDSLL+T++ECIDAF D ME+LL+ VKS + R LAALANAC H VLA RAK+LGA+ELLR L +
Sbjct: 14 RDAPTLLPALQNLLQLAHAGDTDDQAQAAMGISTMVKRVR-IEPSSFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVITTGALGSVLELLSTGNLELKILSMAIAANVLSFSDSLLMTHEECIDAFRDRMEALLDPVKSRRFNDMERDLALAALANACGHRVLAERAKDLGAIELLRRVLKK 246
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A6H5JCG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG7_9PHAE) HSP 1 Score: 263 bits (671), Expect = 1.740e-83 Identity = 155/270 (57.41%), Postives = 190/270 (70.37%), Query Frame = 1
Query: 1 RDGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTDLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKS--GEGVTRGYGLAALANACAHPVLAGRAKELGALELLRICL--DRPVDFHVGRFQQTKTAFARLNGIG-PGAGDLEEGG 795
RD ++LP++Q LLQL++S D D Q++A MGIS M++R R + SSFGPLCHTLSRL AS+ +A+VAY+AR IKILV+DD LR QA AGIPSVLA AL+ E DT CLRE+LGALQTLCYD TVL+V+ G L VLELL +++LEL+IL+ A AANVL++SDSLL ++ECIDAF D ME+LL+ VKS + R LAALANAC H VLA RA LGA+ELLR L R V R + RL G GD+E GG
Sbjct: 14 RDAPTLLPSLQNLLQLSHSGDTDDQVQAAMGISAMVKRVR-IEPSSFGPLCHTLSRLVASEHQAVVAYSARSIKILVVDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDMETVLSVITTGALESVLELLSTSNLELKILSMAIAANVLSFSDSLLTAHEECIDAFRDRMEALLDPVKSHRSNDMERDVALAALANACGHRVLAERAMYLGAIELLRKVLKNSRNRILDVARTNVVSASLTRLERHGFIAGGDVEAGG 282
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A7S2S7X2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7X2_9STRA) HSP 1 Score: 172 bits (436), Expect = 5.540e-48 Identity = 106/250 (42.40%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 28 VQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELL--DST-------------------------------DLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKSGEGVTRGYGLAALANACAHPVLAGRAKELGALELL 678
+Q LL+L++S D +Q +A + +S+++E SFGPL H L RL ++ R + A++AR IK+L+LDD LR QA AG+P VL ALR WE + C RE+LGALQTLC+D A VL VV AGV ++++L DS + E +LA T AN+LAYSDS+LLT +E + + + +LL+ + + R YG+AALANA AHPVLAG+ KELG L++L
Sbjct: 24 LQHLLKLSHSTDLGEQQKAALELSRLVET-TVFPAVSFGPLAHALCRLVPNENRNVAAHSARAIKLLLLDDALRPQAVAAGMPLVLVEALRRWEGEVSCSREILGALQTLCWDKACVLRVVEAGVTTILVDMLAGDSRREDPEEGEGRRSSSIDDEQGFASRGARQRQREAEAVLLAAVTLANILAYSDSVLLTKEEIVLDAARALPALLDLCQGRDKARRCYGVAALANATAHPVLAGKVKELGGLKVL 272
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A835YQZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ0_9STRA) HSP 1 Score: 164 bits (414), Expect = 2.240e-44 Identity = 103/238 (43.28%), Postives = 135/238 (56.72%), Query Frame = 1
Query: 13 SILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTD-------------LELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVKSGEGVT--RGYGLAALANACAHPVLAGRAKELGALELLR 681
S L VQ+LL LA SE P Q +A + +S + E R +SF PL H L RL RA AYAAR +K+ LDD R A +G+P+VL AALR+W ++ PCLREVLGALQTLC++ A+ AVV+ G + P+LELL + AN+LA++D++ LT++ CI+AF D ME +L S R + AALAN AHPVLA R + L A LR
Sbjct: 58 SDLAKVQRLLNLALSESPIDQHKAAVELSTLAE-SRPFAPASFAPLSHALCRLIPGGGRATAAYAARAVKLFALDDAFRELAASSGLPAVLVAALRQWSEEPPCLREVLGALQTLCWEQASARAVVDGGGVEPLLELLRAPGGARAGXXXXXXXXXXXXXXXXXXXANLLAFADTVFLTDEACINAFFDAMEDILEGAVSAHATAALRLHCAAALANGAAHPVLAARLRGLKAAPALR 294
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A7S3H243_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H243_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.610e-44 Identity = 93/227 (40.97%), Postives = 138/227 (60.79%), Query Frame = 1
Query: 4 DGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGVLGPVLELLDSTDLELRILATATAANVLAYSDSLLLTNKECIDAFSDCMESLLNAVK-SGEGVTRGYGLAALANACAHPVLAGRAKELGALELLR 681
DGS +Q LL L+ SE+P+ Q +A + ++K++ G S+GPL H L +L S+ R + +Y+AR +KIL+LDD LR AGIP+V+ A+R+WED+ CLRE+LGALQTL +D V +V+ V+ ++ +TD E+ +LA AT AN+L+YSD+LLL + + M L+ +K S + R Y AA+ANA +P LA + G L+L R
Sbjct: 3 DGSCSSSTLQHLLTLSISENPEDQQKAAVDLAKLVN-GSVFPAYSYGPLSHALCKLIPSNNRTVASYSARALKILLLDDALRQLTVAAGIPAVVCTAVRQWEDEILCLRELLGALQTLTWDKQCVKSVLQTDVISNLILYATATDQEVSVLALATLANILSYSDTLLLADYPTTETLGAGMSVLIETLKGSSQKPQRLYAAAAIANASFNPRLAELLNKHGGLQLCR 228
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: A0A482SVR1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVR1_9ARCH) HSP 1 Score: 115 bits (289), Expect = 1.360e-28 Identity = 62/132 (46.97%), Postives = 88/132 (66.67%), Query Frame = 1
Query: 7 GSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVVNAGV 402
GSS +Q LL+L+YSE+ Q +A + +SK+++ G SFGPL H L RL S R + +YAAR +KIL+LDD LR QA VAG+P+V+ A+++WE++ CLRE+LGALQTL +D V V+ +
Sbjct: 9 GSSF-STLQHLLKLSYSENSADQQKAAIELSKLVD-GTVFPAVSFGPLAHALCRLVPSLNRTVSSYAARALKILILDDALRPQALVAGVPAVVCVAIKQWEEEVLCLRELLGALQTLTWDKQCVKGVLQCDI 138
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Match: W7TLY9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY9_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.620e-22 Identity = 52/121 (42.98%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 28 VQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLCHTLSRLAASDQRAIVAYAARGIKILVLDDTLRSQATVAGIPSVLAAALREWEDDTPCLREVLGALQTLCYDHATVLAVV 390
V++++ LA+S+D Q +A ++ +I SF P+ H L RL S R +V +AAR K L+LDD LR QA + G+P+VL AL+ W+++TPCLRE+LG+LQTL +D TV +++
Sbjct: 28 VKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLI 148 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54996.12904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54996.12904.1 >prot_H-elongata_contig54996.12904.1 ID=prot_H-elongata_contig54996.12904.1|Name=mRNA_H-elongata_contig54996.12904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp RDGSSILPAVQKLLQLAYSEDPDKQLEAVMGISKMIERGRHVNGSSFGPLback to top mRNA from alignment at H-elongata_contig54996:263..3467- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54996.12904.1 ID=mRNA_H-elongata_contig54996.12904.1|Name=mRNA_H-elongata_contig54996.12904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3205bp|location=Sequence derived from alignment at H-elongata_contig54996:263..3467- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54996:263..3467- >mRNA_H-elongata_contig54996.12904.1 ID=mRNA_H-elongata_contig54996.12904.1|Name=mRNA_H-elongata_contig54996.12904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig54996:263..3467- (Himanthalia elongata Himel1 dioecious)back to top |