mRNA_H-elongata_contig54995.12903.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI) HSP 1 Score: 174 bits (441), Expect = 2.760e-44 Identity = 107/194 (55.15%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 7 QVEDVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPS-------------------------GGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEAELLTA 513
+ EDVGIITPYSAQVRLLQDVVG SRRS GGR++GG G +PEIASVDGYQGREKEVI+LSAVRSN GRVGFL+DWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFL+WCE+RGA M EA L A
Sbjct: 647 EAEDVGIITPYSAQVRLLQDVVGTSRRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRKRGGVG-----------------------LPEIASVDGYQGREKEVIILSAVRSNRGGRVGFLADWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLQWCERRGAAMGEASLYVA 817
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A6H5KWY8_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY8_9PHAE) HSP 1 Score: 159 bits (402), Expect = 3.520e-44 Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 1
Query: 226 GESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEAELLTA 513
G + G +PEIASVDGYQGREKEVI+LSAVRSN GRVGFL+DWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFL+WCE+RGA M EA L +
Sbjct: 32 GRKRGGIGLPEIASVDGYQGREKEVIILSAVRSNRGGRVGFLADWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLQWCERRGAAMGEASLYVS 127
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A835Z7U9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U9_9STRA) HSP 1 Score: 133 bits (335), Expect = 6.130e-32 Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 1
Query: 256 EIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEAELLTA 513
E+ SVDGYQGREKEVIVLSAVRSN G VGFLSDWRRLNVAITRARRGVV+VGDP TL D HWRA++ WC + GA+M E +L A
Sbjct: 248 EVRSVDGYQGREKEVIVLSAVRSNRCGAVGFLSDWRRLNVAITRARRGVVIVGDPATLSHDAHWRAYIAWCAENGALMTERDLRRA 333
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A7R9WGL2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGL2_9STRA) HSP 1 Score: 120 bits (300), Expect = 5.540e-29 Identity = 71/162 (43.83%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 13 EDVGIITPYSAQVRLLQDVVG--ASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKR-DRHWRAFLRWCEQRGAVM 489
+ +G++TPY++QV L++ ++ A+ RS KAD+ ++SS DGGG V E+ SVDGYQGRE++V+V SAVRSN G VGFLSDWRR+NVA+TRAR G+VVVGD +TL+ D+HW AF+ WC+ G ++
Sbjct: 28 KSIGVVTPYASQVSLIKSLLSSDATLRSHLKADSPSSSSS----------------DGGG--------------------VTLEVKSVDGYQGRERDVVVFSAVRSNRRGDVGFLSDWRRMNVALTRARNGLVVVGDAETLRDGDKHWNAFVNWCDGVGCMI 153
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A150G7F3_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7F3_GONPE) HSP 1 Score: 127 bits (319), Expect = 4.570e-28 Identity = 80/160 (50.00%), Postives = 100/160 (62.50%), Query Frame = 1
Query: 16 DVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEE 495
D+GIITPY+ QVR LQ ++ R + AA S+P+ L + G A + ++ + EI SVDG+QGREKEVIV SAVRSN +GR+GF+SD RRLNVAITRA+RG+VVVG+PDTL DR W +LRW E RG VMEE
Sbjct: 859 DIGIITPYNGQVRCLQQLLTRGSRLPRSSAGGGAARPASFLRSSPA------------LDDDDAPGAAAREDA-----VLEIKSVDGFQGREKEVIVFSAVRSNPDGRLGFVSDPRRLNVAITRAKRGLVVVGNPDTLSTDRLWTRWLRWVESRGCVMEE 1001
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A2K3DEK9_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DEK9_CHLRE) HSP 1 Score: 127 bits (318), Expect = 6.410e-28 Identity = 82/165 (49.70%), Postives = 101/165 (61.21%), Query Frame = 1
Query: 10 VEDVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEAEL 504
V D+G+ITPY+ QVR LQ ++ +R S V GS P R ++ G G G + V+ EI SVDG+QGREKEVIV SAVRSN GR+GF+SD RRLNVAITRA+RG+VVVG+PDTL DR W +LRW E +G VM+E L
Sbjct: 982 VGDIGVITPYNGQVRCLQQLL--TRGSRLSRGLGV--------GSRPGAFRRAA-----PSMEGDDDGAGGSGGGRAEPVL-EIKSVDGFQGREKEVIVFSAVRSNPEGRLGFVSDPRRLNVAITRAKRGLVVVGNPDTLMVDRLWARWLRWAEAQGCVMQEGGL 1130
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A7S3QXW0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QXW0_DUNTE) HSP 1 Score: 124 bits (311), Expect = 4.670e-27 Identity = 81/165 (49.09%), Postives = 99/165 (60.00%), Query Frame = 1
Query: 4 RQVEDVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEA 498
R +ED+GII+PY QVR LQ V+G + S G GG DG D + E+ A G S + EI SVDG+QGREKEVI+ S VRSN G VGFLSD+RRLNVAITRA+RG++VVG+P+TLK D+ W A+LRW Q A M A
Sbjct: 782 RGLEDIGIISPYQGQVRHLQQVLGP----------------LSSSGRFGRGGSR---DGDADGFTSED---AATGSSMASLL--EIRSVDGFQGREKEVIIFSTVRSNTTGSVGFLSDYRRLNVAITRAKRGLIVVGNPETLKSDKTWSAWLRWAAQHQAWMRGA 922
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: W7TMD0_9STRA (Regulator of nonsense n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMD0_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.180e-26 Identity = 75/163 (46.01%), Postives = 91/163 (55.83%), Query Frame = 1
Query: 16 DVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVMEEAEL 504
DVGI+TPYSAQV+ + ++ A R NP GDL EI SVD YQGREKE+IV+SAVRSN +G+VGFL DWRRLNVAITRA+RG+VV+GDP TL+ D HW A+L+W + G VM EL
Sbjct: 878 DVGIVTPYSAQVKHVTELAQARLRHF-----------------NP-----------GDL---------------------EIQSVDAYQGREKELIVMSAVRSNKHGKVGFLGDWRRLNVAITRAKRGLVVLGDPRTLRHDPHWSAYLKWAYKHGCVMTVGEL 991
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A2E7AWI0_9EURY (AAA domain-containing protein n=4 Tax=unclassified Euryarchaeota TaxID=115531 RepID=A0A2E7AWI0_9EURY) HSP 1 Score: 121 bits (304), Expect = 2.850e-26 Identity = 76/155 (49.03%), Postives = 93/155 (60.00%), Query Frame = 1
Query: 16 DVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRG 480
D+GIITPYS QVR L D+ +++ GRE+GG L+A GL EI +VDGYQGREK+VI+ SAVRSN +G VGFLSD RRLNVAITRA+RG+VVVGDP TL+ D WR++L W E+RG
Sbjct: 558 DIGIITPYSGQVRALSDIFDSNK------------------------GREQGG-----LFA----GL-------------EINTVDGYQGREKDVIIFSAVRSNSDGVVGFLSDQRRLNVAITRAKRGLVVVGDPQTLRYDPTWRSWLEWAEERG 666
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Match: A0A8J4D8K7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D8K7_9CHLO) HSP 1 Score: 120 bits (302), Expect = 7.670e-26 Identity = 76/169 (44.97%), Postives = 101/169 (59.76%), Query Frame = 1
Query: 16 DVGIITPYSAQVRLLQDVV----------GASRRSVAKADADVAASSVPSPGSNPSGGREKGGDGGGDLYACEEQGLAGKGESKKGTVMPEIASVDGYQGREKEVIVLSAVRSNHNGRVGFLSDWRRLNVAITRARRGVVVVGDPDTLKRDRHWRAFLRWCEQRGAVME 492
D+G++TPY+ QVR LQ ++ G R + A AA++ S +E+GL S++G V+ EI SVDG+QGREKEVIV S VRSN GR+GF++D RRLNVAITRARRG+VV+G+PDTL +DR W +L+W RG V+E
Sbjct: 1012 DIGVVTPYNGQVRCLQQLLTNGSRLSRGLGQGARPGSFLRATTAATAAAS---------------------SDEEGL-----SREGAVL-EIKSVDGFQGREKEVIVFSTVRSNPAGRLGFVADGRRLNVAITRARRGLVVLGNPDTLAKDRLWARWLQWVASRGCVLE 1153 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54995.12903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54995.12903.1 >prot_H-elongata_contig54995.12903.1 ID=prot_H-elongata_contig54995.12903.1|Name=mRNA_H-elongata_contig54995.12903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp MRQVEDVGIITPYSAQVRLLQDVVGASRRSVAKADADVAASSVPSPGSNPback to top mRNA from alignment at H-elongata_contig54995:47..1783- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54995.12903.1 ID=mRNA_H-elongata_contig54995.12903.1|Name=mRNA_H-elongata_contig54995.12903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1737bp|location=Sequence derived from alignment at H-elongata_contig54995:47..1783- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54995:47..1783- >mRNA_H-elongata_contig54995.12903.1 ID=mRNA_H-elongata_contig54995.12903.1|Name=mRNA_H-elongata_contig54995.12903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig54995:47..1783- (Himanthalia elongata Himel1 dioecious)back to top |