mRNA_H-elongata_contig54987.12900.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: D8LFY4_ECTSI (Elongation factor G, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFY4_ECTSI) HSP 1 Score: 265 bits (678), Expect = 5.420e-82 Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEPS++VLKKCLRKGTLE FVPVLTGTAFKNKGVQPLLDAVVD+MPSP+EVE IKGVS+DGETAM+RPS DD PF+ALAFKIMSDPFVGTLTFTRIYSGVL SGT+VFNSVKGK ERVGRMLEMHANNREEIK+ARAGDIVALCGLK
Sbjct: 306 GEEPSVDVLKKCLRKGTLENVFVPVLTGTAFKNKGVQPLLDAVVDFMPSPIEVEAIKGVSVDGETAMNRPSSDDEPFAALAFKIMSDPFVGTLTFTRIYSGVLMSGTNVFNSVKGKTERVGRMLEMHANNREEIKEARAGDIVALCGLK 454
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S3AZE6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZE6_9EUKA) HSP 1 Score: 227 bits (579), Expect = 1.820e-73 Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEPS+E LK+C+R GTL F PVLTGTAFKNKGVQPLLDAVVDYMPSP++VE IKG S+DGET M+R S D+APFSALAFKIM+DPFVGTLTF RIYSG+LE GTSV NSVKGK+ER+GRMLEM+AN+R +I+ A AGDI+AL G K
Sbjct: 47 GEEPSVEDLKRCIRTGTLNGAFTPVLTGTAFKNKGVQPLLDAVVDYMPSPLDVEAIKGTSVDGETQMTRESSDEAPFSALAFKIMTDPFVGTLTFARIYSGILEKGTSVLNSVKGKRERIGRMLEMNANDRTDIEVAVAGDIIALVGCK 195
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S4DBA4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBA4_HETAK) HSP 1 Score: 235 bits (600), Expect = 1.880e-71 Identity = 116/149 (77.85%), Postives = 133/149 (89.26%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEP++E LKKC+RKGT+E FVPV+ GTAFKNKGVQPLLDA+VDYMPSP++V IKG SLDGE + R S D+ PFSALAFKIM+DPFVGTLTFTRIYSG+LESGT+VFNSVKGK ER+GRML MHAN+RE+IK+ARAGDIVAL GLK
Sbjct: 215 GEEPTVEQLKKCIRKGTIENLFVPVVLGTAFKNKGVQPLLDAMVDYMPSPLDVPAIKGTSLDGEQELVRKSSDEEPFSALAFKIMNDPFVGTLTFTRIYSGILESGTTVFNSVKGKNERIGRMLLMHANDREDIKEARAGDIVALAGLK 363
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S1TSD5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSD5_9STRA) HSP 1 Score: 230 bits (586), Expect = 3.710e-70 Identity = 114/149 (76.51%), Postives = 130/149 (87.25%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEPS+E L+ C+RKGTLE FVPVLTGTAFKNKGVQPLLDAV+ YMP+P +V NIKGVS DGE M R S D+ PFSALAFKI +DPFVG LTFTRIYSGVL++G++V+NSVKGK ERVGRMLEMHAN+R EIK+ARAGDIVA+ GLK
Sbjct: 189 GEEPSVETLRACIRKGTLESAFVPVLTGTAFKNKGVQPLLDAVMYYMPAPTDVANIKGVSTDGEEEMERVSSDEEPFSALAFKIATDPFVGALTFTRIYSGVLKAGSNVYNSVKGKNERVGRMLEMHANDRTEIKEARAGDIVAIVGLK 337
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S3WR87_9SPIT (Hypothetical protein n=3 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3WR87_9SPIT) HSP 1 Score: 228 bits (580), Expect = 1.680e-69 Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEPS LKK +RKGTL+ FVPV+TGTAFKNKGVQPLLDA++DYMPSP++VE IKG S+DGET M+RPS DD PF+ALAFKIMSDPFVGTLTF RIYSGVLE G SV NSVKGK+ERVGRMLEM+AN+R +I+ ARAGDI+A+ G K
Sbjct: 79 GEEPSPIELKKLIRKGTLQGAFVPVITGTAFKNKGVQPLLDAIIDYMPSPIDVEAIKGTSVDGETPMTRPSSDDEPFAALAFKIMSDPFVGTLTFARIYSGVLEKGASVLNSVKGKRERVGRMLEMNANDRTDIEIARAGDIIAIVGCK 227
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S2PN72_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PN72_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.720e-69 Identity = 113/149 (75.84%), Postives = 128/149 (85.91%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEP + LK C+RKGTL K VPVLTGTAFKNKGVQPLLDAV+DYMPSPVEVE IKG+ +D ET R S D PFSALAFKIM+DPFVG+LTFTR+YSGVLE+G++V+NSVK K ERVGRML+MHANNREE+K A AGDI+ALCGLK
Sbjct: 114 GEEPDVATLKACIRKGTLANKIVPVLTGTAFKNKGVQPLLDAVIDYMPSPVEVEAIKGLEMDLETPTQRLSSDAEPFSALAFKIMNDPFVGSLTFTRVYSGVLEAGSTVYNSVKQKNERVGRMLQMHANNREEVKSAVAGDIIALCGLK 262
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A8G2F5U1_9PROT (Elongation factor G n=2 Tax=Thalassobaculum TaxID=526215 RepID=A0A8G2F5U1_9PROT) HSP 1 Score: 226 bits (575), Expect = 1.430e-67 Identity = 108/149 (72.48%), Postives = 130/149 (87.25%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEPS EVL+ C+RKG L FVPV G+AFKNKGVQPLLDAVVDY+P+P +VE+IKGVS+DGET M R S DD PFSALAFKIM+DPFVG+LTF R+YSG+LE+G+SV N+VK K+ER+GRML MH+NNRE++K+ARAGDIVA+ GLK
Sbjct: 233 GEEPSEEVLRACIRKGVLTNSFVPVFLGSAFKNKGVQPLLDAVVDYLPTPTDVESIKGVSVDGETEMKRKSSDDEPFSALAFKIMNDPFVGSLTFVRVYSGILETGSSVMNTVKDKRERIGRMLLMHSNNREDVKEARAGDIVAIAGLK 381
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S4E6M3_9STRA (Elongation factor G, mitochondrial n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S4E6M3_9STRA) HSP 1 Score: 226 bits (576), Expect = 2.530e-67 Identity = 112/149 (75.17%), Postives = 127/149 (85.23%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
GEEP E LKKC+R GTL FVPVLTGTAFKNKGVQPLLDAVVDYMP+P +VE IKG SLDGETAM R S D+ PFSALAFKIM+DPFVGTLTF RIYSG+L +G V+NSVKG++ERVGRML+MHAN+R E+K A AGDI+A+ GLK
Sbjct: 284 GEEPDAETLKKCIRTGTLSGAFVPVLTGTAFKNKGVQPLLDAVVDYMPAPDDVEAIKGTSLDGETAMERISSDEEPFSALAFKIMTDPFVGTLTFCRIYSGILNAGDGVYNSVKGQRERVGRMLQMHANDRTEVKSAVAGDIIAVAGLK 432
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: W7THY0_9STRA (Elongation factor G, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THY0_9STRA) HSP 1 Score: 226 bits (576), Expect = 4.070e-67 Identity = 116/149 (77.85%), Postives = 130/149 (87.25%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
G+EPS+EVLKKC+R+GTL+ FVPVLTG+AFKNKGVQPLLDAVVDYMPSP EVE+I+GV L GE SR S DD PFSALAFKIM+DPFVG LTF RIYSGVLE+G+SV NS K KQERVGRMLEMHAN+R E+K ARAGDIVA+ GLK
Sbjct: 302 GKEPSVEVLKKCIRQGTLKQHFVPVLTGSAFKNKGVQPLLDAVVDYMPSPTEVEDIQGVLLTGEPT-SRASDDDVPFSALAFKIMNDPFVGPLTFARIYSGVLEAGSSVLNSPKNKQERVGRMLEMHANSRTELKSARAGDIVAIVGLK 449
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Match: A0A7S1B5E2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5E2_9STRA) HSP 1 Score: 221 bits (563), Expect = 5.360e-67 Identity = 108/149 (72.48%), Postives = 126/149 (84.56%), Query Frame = 1
Query: 1 GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPVEVENIKGVSLDGETAMSRPSKDDAPFSALAFKIMSDPFVGTLTFTRIYSGVLESGTSVFNSVKGKQERVGRMLEMHANNREEIKQARAGDIVALCGLK 447
G EP + +KK +RKGTL L FVPVLTGTAFKNKGVQPLLDAV+DYMPSP+EV IKG+ D E+ R S D+ PFSALAFKI +DPFVGT+TFTR+YSGVLESGT+VFNSVKGK ER+GRML+MHAN+R +IK A AGDI+A+CGLK
Sbjct: 264 GVEPDIPTIKKLIRKGTLALDFVPVLTGTAFKNKGVQPLLDAVIDYMPSPLEVAAIKGILPDDESETVRESSDEEPFSALAFKIATDPFVGTITFTRVYSGVLESGTTVFNSVKGKNERIGRMLQMHANDRTDIKTAVAGDIIAICGLK 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54987.12900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54987.12900.1 >prot_H-elongata_contig54987.12900.1 ID=prot_H-elongata_contig54987.12900.1|Name=mRNA_H-elongata_contig54987.12900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp GEEPSLEVLKKCLRKGTLELKFVPVLTGTAFKNKGVQPLLDAVVDYMPSPback to top mRNA from alignment at H-elongata_contig54987:925..3151+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54987.12900.1 ID=mRNA_H-elongata_contig54987.12900.1|Name=mRNA_H-elongata_contig54987.12900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2227bp|location=Sequence derived from alignment at H-elongata_contig54987:925..3151+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54987:925..3151+ >mRNA_H-elongata_contig54987.12900.1 ID=mRNA_H-elongata_contig54987.12900.1|Name=mRNA_H-elongata_contig54987.12900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig54987:925..3151+ (Himanthalia elongata Himel1 dioecious)back to top |