mRNA_H-elongata_contig54975.12899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54975.12899.1
Unique NamemRNA_H-elongata_contig54975.12899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.700e-25
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKMHR 207
            +ENVP ELRSAVALEAYF+DLFPG +HSAVMCLNM  LE KVE+RE++AD+LEKTRSL+L+TGK   H+
Sbjct:  224 VENVPAELRSAVALEAYFEDLFPGCIHSAVMCLNMPNLEAKVERREVVADRLEKTRSLQLLTGKVVQHK 292          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 3.520e-24
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKMHR 207
            +ENVP ELRSAVALEAYF+DLFPG +HSAVMCLNM  LE KVE+RE++AD LEKTRSL+L+TGK   H+
Sbjct:  225 VENVPAELRSAVALEAYFEDLFPGCIHSAVMCLNMPNLEAKVERREVVADWLEKTRSLQLLTGKVVQHK 293          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: K0SUY1_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUY1_THAOC)

HSP 1 Score: 61.2 bits (147), Expect = 2.760e-9
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKMH 204
            IE VPV LRS VAL +YFD LFPGQVHSA + +N+  L+    +R  +  +LEK+ S   +TG++  H
Sbjct:  363 IEKVPVALRSNVALYSYFDQLFPGQVHSASIAMNVPDLDQMSARRLRVCRRLEKSVSFFRLTGQRPTH 430          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: A0A7R9UFD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.610e-8
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEK 162
            +E +P  LR+  AL  YF++LFPGQVHSA++CLN R L   + +RE +A  LEK
Sbjct:  219 VEMIPPHLRTNAALYKYFNELFPGQVHSAIVCLNTRKLAAIMRRREQVASLLEK 272          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: W7UA14_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA14_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-7
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKM 201
            ++ +P+E R+ V L   FD++FPG VHSAV+ L    LED V++R  + D LEK  +   ++ ++ M
Sbjct:  218 VDRIPLEYRNNVGLYTLFDEIFPGDVHSAVVALRADALEDLVQKRAALVDSLEKALATRSVSNREPM 284          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: A0A4D9D0H9_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0H9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.030e-7
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKM 201
            ++ +P+E R+ V L   FD++FPG VHSAV+ L    LED V++R  + D LEK  +   ++ ++ M
Sbjct: 1065 VDRIPLEYRNNVGLYTLFDEIFPGDVHSAVVALRADALEDLVQKRAALVDSLEKALATRSVSNREPM 1131          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: A0A7S1XLF6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLF6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.050e-6
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLE 159
            +E VP  LR++ AL  YFD++FPG+VHSAV+CL+   L   +  RE +A  LE
Sbjct:  227 VEGVPRHLRTSSALYKYFDEIFPGKVHSAVVCLDTSKLARLMRARERVAALLE 279          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: B8C1D9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1D9_THAPS)

HSP 1 Score: 52.0 bits (123), Expect = 5.050e-6
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLEKTRSLELMTGKKKMH 204
            +E VPV LRS  AL  YF+++FP QVHS  + +N+  LE    +R  +A +LEK+ +    TG +  H
Sbjct:  440 VEKVPVALRSNTALFNYFNEMFPNQVHSVCLAMNVPDLEALSNRRLRVARRLEKSLAYYHATGSRPTH 507          
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Match: A0A6H5KK43_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK43_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.270e-5
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIADKLE 159
            +EN+P + RS+ AL  YFD+LFPG+V  A +C++   LE  +E+++   +K+E
Sbjct:  191 VENIPEDKRSSPALYGYFDNLFPGKVSYASLCMHSSDLEATLEKKQEALEKIE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54975.12899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JF22_9PHAE6.700e-2573.91ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LGF9_ECTSI3.520e-2473.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0SUY1_THAOC2.760e-948.53Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A7R9UFD0_9STRA4.610e-851.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7UA14_9STRA3.020e-738.81Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D0H9_9STRA3.030e-738.81ULP_PROTEASE domain-containing protein n=1 Tax=Nan... [more]
A0A7S1XLF6_9STRA5.050e-649.06Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
B8C1D9_THAPS5.050e-641.18Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6H5KK43_9PHAE3.270e-541.51ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54975contigH-elongata_contig54975:157..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LGF9
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF221
Ec32 orthologEc-16_003890.1
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930896.0095954-CDS-H-elongata_contig54975:156..2391622930896.0095954-CDS-H-elongata_contig54975:156..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54975 157..239 +
1691679615.7344384-CDS-H-elongata_contig54975:156..2391691679615.7344384-CDS-H-elongata_contig54975:156..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54975 157..239 +
1622930896.0487995-CDS-H-elongata_contig54975:424..5511622930896.0487995-CDS-H-elongata_contig54975:424..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54975 425..551 +
1691679615.748657-CDS-H-elongata_contig54975:424..5511691679615.748657-CDS-H-elongata_contig54975:424..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54975 425..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54975.12899.1prot_H-elongata_contig54975.12899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54975 157..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54975.12899.1

>prot_H-elongata_contig54975.12899.1 ID=prot_H-elongata_contig54975.12899.1|Name=mRNA_H-elongata_contig54975.12899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
IENVPVELRSAVALEAYFDDLFPGQVHSAVMCLNMRGLEDKVEQREIIAD
KLEKTRSLELMTGKKKMHR*
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mRNA from alignment at H-elongata_contig54975:157..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54975.12899.1 ID=mRNA_H-elongata_contig54975.12899.1|Name=mRNA_H-elongata_contig54975.12899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=395bp|location=Sequence derived from alignment at H-elongata_contig54975:157..551+ (Himanthalia elongata Himel1 dioecious)
ATTGAGAACGTTCCCGTGGAGCTACGGTCCGCTGTGGCACTGGAGGCGTA CTTCGACGACTTGTTCCCCGGTCAGGTGCACAGGTAATCCTCTCGTTCCC AATGGCCTAACAATCCGGGTTTACGAACTAAAAAGTTTTGTAAACTAGGC TTATCAGCTGTTTGGTTCAAGAACGCATCGCGAAAGTACGTATCACGGTT GTGTTGTAGTTGGATCCCAACCGCCGAACGCGATCCCAACGGCTGTACGC GACATCTTGACACGGCAGCGCGGTTATGTGCCTCAACATGCGCGGCCTGG AGGATAAGGTGGAACAAAGAGAGATCATCGCCGACAAGCTCGAGAAAACT CGTTCGCTTGAGCTCATGACCGGAAAAAAGAAAATGCACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54975:157..551+

>mRNA_H-elongata_contig54975.12899.1 ID=mRNA_H-elongata_contig54975.12899.1|Name=mRNA_H-elongata_contig54975.12899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig54975:157..551+ (Himanthalia elongata Himel1 dioecious)
ATTGAGAACGTTCCCGTGGAGCTACGGTCCGCTGTGGCACTGGAGGCGTA
CTTCGACGACTTGTTCCCCGGTCAGGTGCACAGATTGAGAACGTTCCCGT
GGAGCTACGGTCCGCTGTGGCACTGGAGGCGTACTTCGACGACTTGTTCC
CCGGTCAGGTGCACAGCGCGGTTATGTGCCTCAACATGCGCGGCCTGGAG
GATAAGGTGGAACAAAGAGAGATCATCGCCGACAAGCTCGAGAAAACTCG
TTCGCTTGAGCTCATGACCGGAAAAAAGAAAATGCACAGGTGACGCGGTT
ATGTGCCTCAACATGCGCGGCCTGGAGGATAAGGTGGAACAAAGAGAGAT
CATCGCCGACAAGCTCGAGAAAACTCGTTCGCTTGAGCTCATGACCGGAA
AAAAGAAAATGCACAGGTGA
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