mRNA_H-elongata_contig54974.12898.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KQF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 3.080e-29 Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 76 DADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
DAD+ + DRRSVSG V G A SW S TQKCVT +T EA+ VAL D KE +F R + + PQ+ C+ +F N+GA+++A +P + S SKHIDV+ HF++GLV EI +HV + YQ
Sbjct: 20 DADFARKAADRRSVSGGIVTCGGDAVSWFSRTQKCVTLSTIEADCVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEGNQGAIQLAQNPISNSNSKHIDVRHHFLKGLVERKEISVIHVPSPYQ 144
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.430e-28 Identity = 62/147 (42.18%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 16 TKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
T ++ L+F RD + + V DAD+ + + DRRSVSG V + W S TQKCV+ +T EAE++A+ D KEA+F +L L+P + +D+ DNEGA+ +A +P ++SRSKHIDV+ HF++ L G I HV +K Q
Sbjct: 86 TAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 232
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.100e-28 Identity = 62/149 (41.61%), Postives = 93/149 (62.42%), Query Frame = 1
Query: 10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
K T ++ L++ +D + + V DAD+ + + DRRSVSG V + SW + TQKCV+ +T EAE++A+ D KEA+F +L L+P +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L G I HV +K Q
Sbjct: 116 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQ 264
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.100e-28 Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = 1
Query: 16 TKYIDLRFVRDP--GLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
T + + F R G L DAD+ + + DRRSVSG V G A SW SITQKCVT +T EAE+VAL D KE +F R + + PQ+ C+ IF DN+GA+++A +P + S SKHIDV+ HF++ LV E +HV + Q
Sbjct: 121 TSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQ 267
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 115 bits (288), Expect = 7.610e-28 Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query: 10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
K T ++ L++ +D + + V DAD+ + + DRRSVSG V++ SW S TQKCV+ +T EAE++A+ D KEA F +L L+P +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L G I HV +K Q
Sbjct: 211 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 359
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.050e-27 Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
K T ++ L++ +D + + V DAD+ + + DRRSVSG V++ SW S TQKCV+ +T EAE++A+ D KEA+F +L L+P +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L G I HV +K Q
Sbjct: 551 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 699
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.150e-27 Identity = 63/149 (42.28%), Postives = 94/149 (63.09%), Query Frame = 1
Query: 10 KCTKYIDLRFVRDPGLRL--FVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
K T ++ L++ +D + + V DAD+ + + DRRSVSG V++ SW S TQKCV+ +T EAE++A+ D KEA+F +L L+P +D+F DNEGA+ +A +P ++SRSKHIDV+ HF++ L G I HV +K Q
Sbjct: 1106 KETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 1254
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.360e-27 Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 1
Query: 10 KCTKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
K T+ + + + R GL L V DA Y A + DRRSVSG+A +G T S S TQ V+ ++ EAE++A + KEA+F RAVL + P+ +G + + DN+GAM + +P +++RSKHIDV++HFI+GL SGEI V T Q
Sbjct: 210 KETRDLGITYKRGSGLGLEVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQ 355
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5L6Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y3_9PHAE) HSP 1 Score: 115 bits (289), Expect = 3.840e-27 Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 52 GLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
G L DAD+ + + RRS+SG V G A SW S TQKCVT +T EAE+VAL D KE +F R + + PQ+ +C+ IF DN+GA+++A +P + S SKHIDV+ HF++ LV EI +HV + YQ
Sbjct: 748 GFSLQGYADADFASKAAGRRSISGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMLCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQ 880
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.250e-27 Identity = 59/145 (40.69%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 16 TKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTARSWKSITQKCVTTATCEAEWVALCDATKEAIFERAVLVSLQPQLAGMCVDIFGDNEGAMEIANSPSNASRSKHIDVKFHFIQGLVCSGEIRALHVGTKYQ 450
TK + + +VR GL L V D+ Y ++ DRRS +G+AV +G T + TQ +T EAE++A + KEA+F R VL + P+ +G + + DNEGA+ + +P +++RSKHIDV+FHFI+ L +G+I A +V T+ Q
Sbjct: 42 TKDLGIAYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQ 186 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54974.12898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54974.12898.1 >prot_H-elongata_contig54974.12898.1 ID=prot_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp RVRKCTKYIDLRFVRDPGLRLFVLPDADYTAASNDRRSVSGVAVVLGDTAback to top mRNA from alignment at H-elongata_contig54974:1964..2413+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54974.12898.1 ID=mRNA_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig54974:1964..2413+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54974:1964..2413+ >mRNA_H-elongata_contig54974.12898.1 ID=mRNA_H-elongata_contig54974.12898.1|Name=mRNA_H-elongata_contig54974.12898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig54974:1964..2413+ (Himanthalia elongata Himel1 dioecious)back to top |