mRNA_H-elongata_contig54943.12893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54943.12893.1
Unique NamemRNA_H-elongata_contig54943.12893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Match: A0A6H5LQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ53_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.760e-18
Identity = 56/86 (65.12%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARA-LPKPIR--SFTSRQSADVSRLTTRWIQACHQGQPSSGRNRTCA-SSAAEH 246
            MNWMTSGRKRVQRSQK+KELRAKHFA+VAAD ARA + +P R  S T  QSADVSRL +RWIQ            RT A S+AAEH
Sbjct:    1 MNWMTSGRKRVQRSQKVKELRAKHFAKVAADRARAPVSRPARASSSTLNQSADVSRLKSRWIQPLPSTHKVPALQRTVAGSAAAEH 86
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BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Match: A0A836C816_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C816_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.910e-5
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:    1 MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARALPKPIRSFTSRQ---------SADVSRLTTRW 174
            MNWMTSG+KR+ R+QK +E R++HF+  ++  A+ L +   +  SR          SADV RL  RW
Sbjct:   48 MNWMTSGKKRITRTQKAREQRSQHFSSSSSQRAKLLGRGSDASASRPIKKPPTLHGSADVMRLKCRW 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54943.12893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LQ53_9PHAE2.760e-1865.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C816_9STRA9.910e-541.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54943contigH-elongata_contig54943:2028..3222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size246
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54943.12893.1prot_H-elongata_contig54943.12893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54943 2028..3222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930895.2329662-CDS-H-elongata_contig54943:2027..20501622930895.2329662-CDS-H-elongata_contig54943:2027..2050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 2028..2050 +
1691679615.3506372-CDS-H-elongata_contig54943:2027..20501691679615.3506372-CDS-H-elongata_contig54943:2027..2050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 2028..2050 +
1622930895.2513137-CDS-H-elongata_contig54943:2404..25221622930895.2513137-CDS-H-elongata_contig54943:2404..2522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 2405..2522 +
1691679615.3624308-CDS-H-elongata_contig54943:2404..25221691679615.3624308-CDS-H-elongata_contig54943:2404..2522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 2405..2522 +
1622930895.2643456-CDS-H-elongata_contig54943:3117..32221622930895.2643456-CDS-H-elongata_contig54943:3117..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 3118..3222 +
1691679615.374766-CDS-H-elongata_contig54943:3117..32221691679615.374766-CDS-H-elongata_contig54943:3117..3222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54943 3118..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54943.12893.1

>prot_H-elongata_contig54943.12893.1 ID=prot_H-elongata_contig54943.12893.1|Name=mRNA_H-elongata_contig54943.12893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MNWMTSGRKRVQRSQKIKELRAKHFARVAADGARALPKPIRSFTSRQSAD
VSRLTTRWIQACHQGQPSSGRNRTCASSAAEH
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mRNA from alignment at H-elongata_contig54943:2028..3222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54943.12893.1 ID=mRNA_H-elongata_contig54943.12893.1|Name=mRNA_H-elongata_contig54943.12893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-elongata_contig54943:2028..3222+ (Himanthalia elongata Himel1 dioecious)
ATGAACTGGATGACCTCTGGCAGGTGCAGGGGCAGTAATTATTTGGTGCA
ATCACCGAGATAATGGCGCCCTTTTCGGTAATGCTGATAGAACACTTGTC
GAATTACAAGTCAAGTAAGGGAAACAATTCAAAACTCCGCGACCGACGTT
ATTCGGTCCACTCCGAGGCCAACGCATCCAACAGCAGAGGGTTTAAAGAC
TAGATTAGTGATTTACCTTCCACGAGTCTTGCGGGCGTGTACACTATCCG
AGGCTCTAATGACGTATCTCTTCGTCTAATGACGTACGGTGATATTTTTG
TCTTCGTTTAGAATGATGATTTCCACCCTCTGCCTTGAAACCAACAACTT
TGTGCTTGTGGGACAAAAATCCGACAGGAAGAGGGTCCAACGATCCCAAA
AGATTAAGGAACTCCGCGCGAAGCATTTCGCAAGAGTAGCTGCTGATGGA
GCTCGGGCATTGCCGAAGCCCATTCGCAGTTTTACGTCACGCCAAGTGTG
TTCGCAGCTTAGAAATATAGATTTAAATAATAACTACGAGGTCTTGCAAA
ACGTGGTCAACTACAGTCAACTTAAAAAATAAAATATAAAATAAATAATA
TATATATAATATATATATATATATATATATTCACCATTACCGTATATAGC
TATGTACTGTACCTTTCGACAGTCGCTGATGTAATAGCTTAAATTGATGA
AGGTTAACGTCGTGTATTTGTTATGGAAGGACCGCCCGTTTAGAGTCTGC
GAGAAGCCGATCCCTTCATTACGACGCAAAATTAGGCAGTTCCTAATAGC
GGACCACAACCTGCTGCTCGGGTTTTTGCACCATAGTAGGATGTCTGGTA
AGCTGGTCGATCATTGTTGTTGTTGGCCCCACATTCAGCAGAAGATTAAC
CGGATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAAAATAATTT
TCCGCTGTCCCCGTGCGATGCATCTTTTGCTAACGCTTAATCCTGTCAGA
TCGGCAGTCGATCCGTTCTGGGGCTGATGGCAGAGAATCTTCTTGTTTCC
AAACAGCTGAGTACTTCGTTTGCTCTCGTCTGTGCTGCAGTCCGCCGACG
TTTCCAGGCTCACGACACGATGGATCCAGGCCTGTCATCAAGGGCAACCC
TCTTCAGGACGCAACAGGACCTGCGCATCTTCAGCAGCAGAACAC
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Coding sequence (CDS) from alignment at H-elongata_contig54943:2028..3222+

>mRNA_H-elongata_contig54943.12893.1 ID=mRNA_H-elongata_contig54943.12893.1|Name=mRNA_H-elongata_contig54943.12893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig54943:2028..3222+ (Himanthalia elongata Himel1 dioecious)
ATGAACTGGATGACCTCTGGCAGATGAACTGGATGACCTCTGGCAGGAAG
AGGGTCCAACGATCCCAAAAGATTAAGGAACTCCGCGCGAAGCATTTCGC
AAGAGTAGCTGCTGATGGAGCTCGGGCATTGCCGAAGCCCATTCGCAGTT
TTACGTCACGCCAAGAAGAGGGTCCAACGATCCCAAAAGATTAAGGAACT
CCGCGCGAAGCATTTCGCAAGAGTAGCTGCTGATGGAGCTCGGGCATTGC
CGAAGCCCATTCGCAGTTTTACGTCACGCCAATCCGCCGACGTTTCCAGG
CTCACGACACGATGGATCCAGGCCTGTCATCAAGGGCAACCCTCTTCAGG
ACGCAACAGGACCTGCGCATCTTCAGCAGCAGAACACTCCGCCGACGTTT
CCAGGCTCACGACACGATGGATCCAGGCCTGTCATCAAGGGCAACCCTCT
TCAGGACGCAACAGGACCTGCGCATCTTCAGCAGCAGAACAC
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