mRNA_H-elongata_contig54889.12884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54889.12884.1
Unique NamemRNA_H-elongata_contig54889.12884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Match: D8LDC0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC0_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.660e-45
Identity = 91/156 (58.33%), Postives = 112/156 (71.79%), Query Frame = 1 
Query:   22 QEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAESDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVDLQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNRGSRGGGGFTPPESPRAGVLRGSNTSF 489
            +E  KEP+  S  Q+ +RTA   NE++ F+ +QM LE QR AE+   LK ++ K +HE GR+TMQ+RNQNA+ +QK  E +HKLR+R KELVDLQ         EAYKEK+RKCQAWEKAY NLRSQT   SRGGG FTPPESPRAG +RG + SF
Sbjct:   89 EEALKEPNHHSSSQAALRTAELANETLGFLFSQMLLENQRGAEATSVLKGEVAKLKHEQGRVTMQMRNQNAAADQKHREMEHKLRVRTKELVDLQ---------EAYKEKNRKCQAWEKAYANLRSQTTDPSRGGG-FTPPESPRAGAMRGPSGSF 234
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BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Match: A0A6H5JFE1_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.550e-33
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:   22 QEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAESDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVDLQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNR 411
            QE  KEP++ S  Q+ +RTA   NE++ F+ +QM LE QR AE+   LK ++ K +HE GR+TMQ+RNQNA+ +QK  E +HKLR+R KELVDLQ         EAYKEK+RKCQAWEKAY NLRSQ  R
Sbjct:  152 QEALKEPNYHSSSQAALRTAELANETLGFLFSQMLLESQRGAEATSLLKGEVAKLKHEQGRVTMQMRNQNAAADQKQREMEHKLRVRTKELVDLQ---------EAYKEKNRKCQAWEKAYANLRSQGRR 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54889.12884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDC0_ECTSI8.660e-4558.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFE1_9PHAE1.550e-3356.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54889contigH-elongata_contig54889:267..2168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue4.2e-38
Seed eggNOG ortholog2880.D8LDC0
EggNOG OGs2C3BQ@1,2SGWG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size489
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54889.12884.1prot_H-elongata_contig54889.12884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54889 267..2168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930894.4917898-CDS-H-elongata_contig54889:266..3531622930894.4917898-CDS-H-elongata_contig54889:266..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 267..353 -
1691679615.0805259-CDS-H-elongata_contig54889:266..3531691679615.0805259-CDS-H-elongata_contig54889:266..353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 267..353 -
1622930894.5090885-CDS-H-elongata_contig54889:1265..13501622930894.5090885-CDS-H-elongata_contig54889:1265..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1266..1350 -
1691679615.0899634-CDS-H-elongata_contig54889:1265..13501691679615.0899634-CDS-H-elongata_contig54889:1265..1350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1266..1350 -
1622930894.5300052-CDS-H-elongata_contig54889:1700..18011622930894.5300052-CDS-H-elongata_contig54889:1700..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1701..1801 -
1691679615.098042-CDS-H-elongata_contig54889:1700..18011691679615.098042-CDS-H-elongata_contig54889:1700..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1701..1801 -
1622930894.5460603-CDS-H-elongata_contig54889:1952..21681622930894.5460603-CDS-H-elongata_contig54889:1952..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1953..2168 -
1691679615.1062815-CDS-H-elongata_contig54889:1952..21681691679615.1062815-CDS-H-elongata_contig54889:1952..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54889 1953..2168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54889.12884.1

>prot_H-elongata_contig54889.12884.1 ID=prot_H-elongata_contig54889.12884.1|Name=mRNA_H-elongata_contig54889.12884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MYDNNDPQEIYKEPDFRSMGQSVVRTAMALNESIAFVLAQMTLEGQRAAE
SDMQLKADLVKQRHENGRLTMQLRNQNASMEQKLSEADHKLRLREKELVD
LQARLYSAKSQEAYKEKSRKCQAWEKAYGNLRSQTNRGSRGGGGFTPPES
PRAGVLRGSNTSF
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mRNA from alignment at H-elongata_contig54889:267..2168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54889.12884.1 ID=mRNA_H-elongata_contig54889.12884.1|Name=mRNA_H-elongata_contig54889.12884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1902bp|location=Sequence derived from alignment at H-elongata_contig54889:267..2168- (Himanthalia elongata Himel1 dioecious)
ATGTACGACAATAACGATCCTCAGGAGATCTACAAGGAACCCGACTTTCG
GAGCATGGGACAGTCTGTGGTGCGGACAGCGATGGCACTCAATGAGTCGA
TAGCCTTCGTCCTTGCGCAGATGACCCTTGAAGGCCAGAGAGCGGCGGAG
TCTGATATGCAGCTGAAGGCCGACCTAGTGAAACAGCGACACGAGAACGG
CCGACTCACCATGCAGGTGGATATATCTCTACGACTCCCCACCAAGAGAG
GGGGTGATTAGGCTTCACCTCCTAATCCAAATCCACAGTTTCGTGACTCC
TGTTCATTAACATTTCTCTACTGCCGCGTTGCACCTTAACTCTGGGGTGC
GCCCATGACTCGGCTAGCTTCGGAATCAAAACGCGTCGATGGAGCAAAAG
CTGAGTGAGGCGGACCACAAGCTTCGACTTCGCGAAAAAGAGCTCGTGGA
CCTACAGGCACGCCTATAGTTGTGCACCACGCGCGGGAGGCTCTCCGCAC
ACCTTTACACCCAGGCTGTAACGAGTAGATACGGTAGTGTAAGGCATATA
CTTTGTCACCTCCCACTACTCATGGAGATATACTTGCCAGTTGGTAAGAA
GTAGATTAGGCGGGATTCCACCATGGGTAAGTGGTACATCGTTGACGCTA
CTGAGTGAATCACATGTGATCAGAGGGGGTCACCATTTCGCGCGAATTGG
AGGATTCTAGCGCCCGACTTTTCTTTTCAATGGGGCTTGAAAGAAAGCTC
TTCATGCGTCGTCAATCTTCAATTCTTATCCCGTTGCACACGAACTGCTC
CGTTTGGAAATAATCGAGTTCGGCCAAATCGCAGGAGGCTTACAAGGAGA
AAAGCAGGAAATGTCAGGCCTGGGAAAAAGCATACGGGAACCTCCGTTCC
CAGGTGCCTTGTCGACAGACCTTCTTCGTAACCTCTCGACGCGTGATGCA
ATGGAGCGCTTAGGGATGGATTATGACGCGTGGTCCAACGGTGGGGTTAA
GAACGGTTGAAATACAACTGATTTAACAAACAACCGAGCATGACTTCACA
TCAGGGGCTGGCTGGACTTGTATATTTCGGTGCACCCGGATAAACATAAG
TATATGGCCTACACCTCTGACCAAACTACGAAGAATGTAACCCATCGCGT
CGAGTTCTTGATCGAAGCAGAGTCAGATGGAAGAATGCTCACCATGTTAG
TCCTTTCGTTGAACTACGCGCTTCTATTTGTTACCGTATTATTTTAATAT
TGTATTATCACTTTCTGCCCATGGGGCATTTTGGCGTCATTCAACGTGCT
AGGTTACTAAACCCACCTACTGTAACGTTGCCCATCTCATCGACAGTGGT
CCTAAGGGATAAAACCATATCTCCCCGGTTCACGCCCACGAATGTCTATC
GTGATGCACCTTCAGCAGTCCTACACCTCGTCAACTGATAATGGTCGAAC
TTTGCCTACATCTATCTCCCGTTTTCATGTTTTCCGTTAAAATAGTTACT
GTACAAATAAAAGTAACACCTTGGTTACGTTAATGGTGTGCCGATGACTA
TTCGATGTGTCGGTAATTATTCGATGTGTCGATGACTATTCGATGTGTCG
GTAACTATTCAATGAGTCAATGACAACTGAAAGTACCGATGACTACTCAT
GCGTCGTCGTTAATTATTCGGTGTGTCGATAACTTTTCATTGATGCATCG
ATGACTTTTCATGTGTCGATGGCTATTCGATGTGTCGACGATAACCATTA
GACCGTTCGACGAGACCCGTATCAACCAGTGCGCGTCAAAAATACCCTAA
AATGCATCTTCATAGACTAACAGGGGTTCAAGAGGAGGGGGCGGATTCAC
TCCCCCGGAATCTCCTCGCGCCGGCGTTTTGCGGGGTTCGAACACTTCAT
TT
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Coding sequence (CDS) from alignment at H-elongata_contig54889:267..2168-

>mRNA_H-elongata_contig54889.12884.1 ID=mRNA_H-elongata_contig54889.12884.1|Name=mRNA_H-elongata_contig54889.12884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig54889:267..2168- (Himanthalia elongata Himel1 dioecious)
ATGTACGACAATAACGATCCTCAGGAGATCTACAAGGAACCCGACTTTCG
GAGCATGGGACAGTCTGTGGTGCGGACAGCGATGGCACTCAATGAGTCGA
TAGCCTTCGTCCTTGCGCAGATGACCCTTGAAGGCCAGAGAGCGGCGGAG
TCTGATATGCAGCTGAAGGCCGACCTAGTGAAACAGCGACACGAGAACGG
CCGACTCACCATGCAGATGTACGACAATAACGATCCTCAGGAGATCTACA
AGGAACCCGACTTTCGGAGCATGGGACAGTCTGTGGTGCGGACAGCGATG
GCACTCAATGAGTCGATAGCCTTCGTCCTTGCGCAGATGACCCTTGAAGG
CCAGAGAGCGGCGGAGTCTGATATGCAGCTGAAGGCCGACCTAGTGAAAC
AGCGACACGAGAACGGCCGACTCACCATGCAGCTTCGGAATCAAAACGCG
TCGATGGAGCAAAAGCTGAGTGAGGCGGACCACAAGCTTCGACTTCGCGA
AAAAGAGCTCGTGGACCTACAGGCACGCCTATACTTCGGAATCAAAACGC
GTCGATGGAGCAAAAGCTGAGTGAGGCGGACCACAAGCTTCGACTTCGCG
AAAAAGAGCTCGTGGACCTACAGGCACGCCTATATTCGGCCAAATCGCAG
GAGGCTTACAAGGAGAAAAGCAGGAAATGTCAGGCCTGGGAAAAAGCATA
CGGGAACCTCCGTTCCCAGTTCGGCCAAATCGCAGGAGGCTTACAAGGAG
AAAAGCAGGAAATGTCAGGCCTGGGAAAAAGCATACGGGAACCTCCGTTC
CCAGACTAACAGGGGTTCAAGAGGAGGGGGCGGATTCACTCCCCCGGAAT
CTCCTCGCGCCGGCGTTTTGCGGGGTTCGAACACTTCATTTACTAACAGG
GGTTCAAGAGGAGGGGGCGGATTCACTCCCCCGGAATCTCCTCGCGCCGG
CGTTTTGCGGGGTTCGAACACTTCATTT
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