mRNA_H-elongata_contig54826.12880.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.450e-69 Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+ + LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F + +Y +NT+ LH GNR++S R KHI +R+FF++ELV EGKISIHY TED AD+ TKH +K
Sbjct: 255 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNK 422
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 218 bits (554), Expect = 3.790e-69 Identity = 107/165 (64.85%), Postives = 130/165 (78.79%), Query Frame = 1
Query: 10 AKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
AK L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+ + LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F + +Y +NT+ LH GNR++S R KHI +R+FF++ELV EGKISIHY TED A + TKH +K
Sbjct: 33 AKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNK 197
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 224 bits (571), Expect = 7.170e-67 Identity = 111/168 (66.07%), Postives = 134/168 (79.76%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+ + LQGLTA STMEAELVA+AL MK AVFCSNM+ ELG + F + +Y +NT+ LH GNR++S R KHI +R+FF++ELV EGKISIHYV TED AD+ TKH +K
Sbjct: 476 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 643
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 226 bits (577), Expect = 5.320e-66 Identity = 111/167 (66.47%), Postives = 135/167 (80.84%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLS 498
M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+ + LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F + +Y +NT+ LH GNR++S R KHI +R+FF++ELV EGKISIHYV+TED AD+ TKH +
Sbjct: 815 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFN 981
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 219 bits (559), Expect = 3.600e-63 Identity = 109/168 (64.88%), Postives = 133/168 (79.17%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ +LANAP+ + LQGLTA STMEAELVA+AL M AVF SNM+ ELGF + F + +Y +NT+ LH GNR++S R KHI +R+FF++ELV EGKISIHYV TED AD+ TKH +K
Sbjct: 1484 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 1651
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.970e-62 Identity = 104/167 (62.28%), Postives = 129/167 (77.25%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSVLYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
MGAAKHLL YL+GS DFSITYK+GGF L SDANWGNNPDN +S SSYI+M++ AP+ K LQ LTA ST+EAELVAAAL MK +FC+NM+ ELGF F S NT+ LHV GN+T+S R KH+ +R+F+++E+V EG+ISIHY+ TED AD+ TKHL+K
Sbjct: 509 MGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYINTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNK 675
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 205 bits (522), Expect = 3.030e-59 Identity = 100/168 (59.52%), Postives = 126/168 (75.00%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
MGAAK YLAG+ F I YK+GGF+L F+D+NWGNNPDNG+STSS++ ML +AP+ K LQ LT QSTME ELVAAAL +K AVFCSN++ ELGF + V LY +NT+ LH GNR+YS KHI +R+FF++ELV EG+I+IHYV + PAD+ TKHL+K
Sbjct: 538 MGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNK 705
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 191 bits (486), Expect = 4.640e-58 Identity = 111/241 (46.06%), Postives = 133/241 (55.19%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRY----------------------------------------------------------------------------FFVQELVGEGKISIHYVKTEDQPADLATKH 492
M AAKH L YLAG+ DFSITYK+GGF+LA FSD+NW NNPDNG+STSSY+ MLANAP+ + LQGLTA STMEAELVA+AL MK AVFCSNM+ ELGF + F + +Y +NT+ LH GNR++S R KHI +R+ FF++ELV EGKISIHYV TED AD+ TKH
Sbjct: 1 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 241
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 192 bits (487), Expect = 7.270e-56 Identity = 98/150 (65.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIH 447
MGAAKHLL G+ DF ITYK+GGF+L FSDANW +NPDN RSTSSY++M++ AP+ K LQ LT STMEAEL+AAALTMK AVFCSNM+ ELGF + FG V LYINNT+ LHV GN+ YS R KHI + +F V+ELV EG I+IH
Sbjct: 354 MGAAKHLL---RGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 196 bits (497), Expect = 1.570e-55 Identity = 97/168 (57.74%), Postives = 131/168 (77.98%), Query Frame = 1
Query: 1 MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIVMLANAPIRLKVRLQGLTAQSTMEAELVAAALTMKNAVFCSNMILELGFDESFGSV-LYINNTSALHVAGNRTYSPRAKHIVVRYFFVQELVGEGKISIHYVKTEDQPADLATKHLSK 501
MGAAKHLL YL+GS DFSITYK+GGF L S+AN G+N DNG+S SSYI+M++ AP LK LQ LTA ST+EAELVA+AL MK +FC+NM+ ELGF F S L+I++T+ L+V GN+T+S KH+ +R+F+++++V EG+ISIHY+ TED AD+ T++L+K
Sbjct: 596 MGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNK 763 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54826.12880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54826.12880.1 >prot_H-elongata_contig54826.12880.1 ID=prot_H-elongata_contig54826.12880.1|Name=mRNA_H-elongata_contig54826.12880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp MGAAKHLLCYLAGSADFSITYKQGGFRLAVFSDANWGNNPDNGRSTSSYIback to top mRNA from alignment at H-elongata_contig54826:837..1337- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54826.12880.1 ID=mRNA_H-elongata_contig54826.12880.1|Name=mRNA_H-elongata_contig54826.12880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig54826:837..1337- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54826:837..1337- >mRNA_H-elongata_contig54826.12880.1 ID=mRNA_H-elongata_contig54826.12880.1|Name=mRNA_H-elongata_contig54826.12880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig54826:837..1337- (Himanthalia elongata Himel1 dioecious)back to top |