mRNA_H-elongata_contig54793.12877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54793.12877.1
Unique NamemRNA_H-elongata_contig54793.12877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A6H5JAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAM1_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 2.880e-95
Identity = 159/253 (62.85%), Postives = 193/253 (76.28%), Query Frame = 1 
Query:    1 QVPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTL--EGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGGGITVEGFLRLMQLFIEKKQV 753
            +VP VM+DVH+PPEE DD V CTI+DSSAL R RQQL+EKM+SA+SI+VLYDV RPETLTHLDTFWLPLIE +A+  PVVIVRNK+DTL  EG   EQ S  L +QM PLE+RY+ FH+SLECS+V  +G+ Q F+H  +AALYP APLY+ +  RL P FDRA+RRLFRIYD DRDG+L DDELN FQ+ A++L LS  D+ SL+KIL +LA          V+E   G  G  T EGFLRL+QLFI+KKQ+
Sbjct:   32 EVPAVMSDVHIPPEENDDQVFCTITDSSALPRGRQQLVEKMQSAESILVLYDVQRPETLTHLDTFWLPLIEANAEDVPVVIVRNKMDTLVAEGDLGEQRSIDLERQMEPLEKRYRCFHVSLECSAVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIYDVDRDGLLCDDELNAFQFHAFRLLLSASDLESLRKILGRLASEGGEDVEKFVKEDRGGDPGRFTEEGFLRLIQLFIDKKQM 284
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: D8LB08_ECTSI (Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB08_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.320e-93
Identity = 157/253 (62.06%), Postives = 194/253 (76.68%), Query Frame = 1 
Query:    1 QVPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTL--EGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGGGITVEGFLRLMQLFIEKKQV 753
            +VP VM+DVH+PPEE DD V CTI+DSSAL RDRQQL+EKM+SA+S++VLYDV RPETLTHLDTFWLPLIE +A+  PVVIVRNK+DTL  EG   EQ S  L +QM PLE+RY+ FH+SLECSSV  +G+ Q F+H  +AALYP APLY+ +  RL P FDRA+RRLFRI+D DRDG+L +DELN FQ+ A++L LS+ D+ SL+KIL +LA          V+E   G   G T  GFLRL+QLFI+KKQ+
Sbjct:   32 EVPAVMSDVHIPPEENDDQVFCTITDSSALPRDRQQLVEKMQSAESVLVLYDVQRPETLTHLDTFWLPLIEANAEDVPVVIVRNKMDTLVAEGDLGEQRSVDLERQMEPLEKRYRCFHVSLECSSVSGMGINQAFYHGRTAALYPRAPLYNAEEGRLCPRFDRAMRRLFRIHDVDRDGLLRNDELNAFQFHAFRLLLSDSDLESLRKILGRLASEGGEDVEKFVQEERGGNPKGFTEAGFLRLIQLFIDKKQM 284
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A4S8I7W8_MUSBA (Miro domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8I7W8_MUSBA)

HSP 1 Score: 161 bits (408), Expect = 3.150e-44
Identity = 97/248 (39.11%), Postives = 145/248 (58.47%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VP VM    LPP+   D V  TI D+S+   ++ +LI + ++AD+IV+ Y   RP TL  L T+WLP + R     PV++V  K+D      DEQ   SL Q M+P+ ++Y+     +ECS++ Q+ VQ+VF++A  A L+P APL+D + + L+P   RA++R+F + D DRDG LSD ELN FQ   +   L + +I  +KK+++              E+  EG+   G+T+ GFL L  LFIEK
Sbjct:   24 VPHVMPPTRLPPDYYPDRVPLTIIDTSSRPENKAKLIAECKAADAIVLTYACDRPSTLDRLSTYWLPELRRLEVKVPVIVVGCKLDLR----DEQ-QVSLEQVMSPIMQQYREIETCIECSALRQIQVQEVFYYAQKAVLHPTAPLFDQETQSLKPRCVRALKRIFILCDHDRDGALSDSELNDFQVRCFNAPLQQTEIAGVKKVVQ--------------EKLPEGVNDHGLTLTGFLFLHALFIEK 252
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A4S8I7M5_MUSBA (Miro domain-containing protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8I7M5_MUSBA)

HSP 1 Score: 160 bits (404), Expect = 7.420e-44
Identity = 97/248 (39.11%), Postives = 144/248 (58.06%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VP VM    LP +   D V  TI D+S+   ++ +LI + +SAD+IV+ Y   RP TL  L T+WLP + R     PV++V  K+D      DEQ   SL Q M+P+ ++Y+     +ECS++ Q+ VQ+VF++A  A L+P APL+D + + L+P   RA++R+F + D DRDG LSD ELN FQ   +   L + +I  +KK+++              E+  EG+   G+T+ GFL L  LFIEK
Sbjct:   46 VPHVMPPTRLPADYYPDRVPLTIIDTSSRPENKAKLIAECKSADAIVLTYACDRPSTLDRLSTYWLPELRRLEAKVPVIVVGCKLDLR----DEQ-QVSLEQVMSPIMQQYREIETCIECSALRQIQVQEVFYYAQKAVLHPTAPLFDQETQSLKPHCVRALKRIFILCDHDRDGALSDSELNDFQVRCFNAPLQQTEIAGVKKVVQ--------------EKLPEGVNDFGLTLTGFLFLHALFIEK 274
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A175YKF2_DAUCS (Miro domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YKF2_DAUCS)

HSP 1 Score: 157 bits (396), Expect = 7.690e-43
Identity = 92/248 (37.10%), Postives = 144/248 (58.06%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VPPV+    LP +   + V  TI D+++    R +L E+++ AD++V+ Y   +P TL  L TFWLP + R     PV++V  K+D      DEQ S SL Q M+P+ ++++     +ECS++  + + +VF+++  A L+P APL+D +A+ L+P   RA++R+F I D DRDG LSD ELN FQ   +   L   +IV +K++++              E+  EG+   G+T+ GFL L  LFIEK
Sbjct:   40 VPPVLPPTTLPADIYPEKVPVTIIDTASSVESRGKLTEELKQADAVVLTYACDKPSTLDRLSTFWLPELRRLEINVPVIVVGCKLDLR----DEQHSVSLEQVMSPIMQQFREIETCIECSALNHIQIPEVFYYSQKAVLHPTAPLFDQEAQTLKPRCIRALKRIFIICDQDRDGALSDAELNDFQVKCFNAPLQPSEIVGVKRVVQ--------------EKLPEGVNDRGLTLTGFLFLHALFIEK 269
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A843XFR1_COLES (Miro domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843XFR1_COLES)

HSP 1 Score: 156 bits (394), Expect = 2.490e-42
Identity = 97/248 (39.11%), Postives = 141/248 (56.85%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VP VM    LP +   D V  TI D+S+    R +LI + + AD+IV+ Y   RP TL  L ++WLP + R     PV++V  K+D      DEQ   SL Q MAP+ +R++     +ECS++ Q+ V +VF++A  A L+P APL+D + + L+P   +A++R+F I D DRDG LSD ELN FQ   +   L   +IV +KK+++              E+  EG+   G+T+ GFL L  LFIEK
Sbjct:   41 VPEVMPPTRLPADYYPDRVPITIIDTSSREEHRARLIAECQQADAIVLTYACDRPATLERLSSYWLPELRRLDVKVPVIVVGCKLDLR----DEQ-QLSLEQLMAPIMQRFREIETCIECSALKQIQVPEVFYYAQKAVLHPTAPLFDQETQSLKPRCVKALKRIFIICDQDRDGALSDAELNDFQVRCFNAPLQPSEIVGVKKVVQ--------------EKMPEGVNDQGLTLTGFLFLHALFIEK 269
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A3N6RJ61_BRACR (Miro domain-containing protein n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6RJ61_BRACR)

HSP 1 Score: 157 bits (396), Expect = 2.660e-42
Identity = 91/248 (36.69%), Postives = 141/248 (56.85%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VPPV+ D  LP E   D +  TI D+S+   DR  + E+++ AD++V+ Y   RPETL  L T+WLP + R     P+++   K+D      D+    SL Q M+P+ ++++     +ECS++ QL  Q+VF++A    L+P  PL+D +A+ L+P   RA++R+F + D DRDG LS+ ELN FQ   +   L   +I  +K++++              E+  EG+   G+TV GFL L  LFIEK
Sbjct:   43 VPPVLPDTKLPFEFFPDGIPVTIVDTSSRPEDRSMVAEELKQADAVVLTYACDRPETLEGLTTYWLPELRRLEVKVPIIVAGCKLDFR----DDNNQVSLEQVMSPIMQQFREIETCIECSALKQLQAQEVFYYAQKTVLHPTGPLFDQEAQALKPRCVRALKRIFILCDQDRDGALSEAELNDFQVKCFHAPLQPSEIEGVKRVVQ--------------EKLPEGVNERGLTVTGFLFLHALFIEK 272
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A0K9QDY0_SPIOL (Mitochondrial Rho GTPase n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9QDY0_SPIOL)

HSP 1 Score: 162 bits (409), Expect = 3.260e-42
Identity = 95/248 (38.31%), Postives = 142/248 (57.26%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEK 744
            VPPVM    LP +   D V  TI D+S+    R ++ E+M  AD++V+ Y   RPETL  L T+WLP + R     PV++V  K+D      DEQ   SL Q M+P+ ++++     +ECS+  Q+ + +VF++A  A L+P APL+D + + LRP   RA++R+F + D D+DG LSD ELN FQ   +   L   +I+ +K+++E              E+  EG+   G+T+ GFL L  LFIEK
Sbjct:   40 VPPVMPPSRLPDDMYPDRVPITIIDTSSSVEQRNKVGEEMRRADAVVLTYACDRPETLDRLSTYWLPELRRLEVKVPVIVVGCKLDLR----DEQQQVSLEQVMSPIMQQFREIETCIECSASRQIQIPEVFYYAQKAVLHPTAPLFDQETQTLRPQCVRALKRIFILCDHDKDGALSDAELNDFQVKCFNAPLQPSEIIGVKRVVE--------------EKLSEGVNERGLTLRGFLFLHALFIEK 269
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A1Y3NAR0_PIRSE (Mitochondrial Rho GTPase 1 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NAR0_PIRSE)

HSP 1 Score: 153 bits (387), Expect = 1.150e-41
Identity = 88/245 (35.92%), Postives = 139/245 (56.73%), Query Frame = 1 
Query:   13 VMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIG-GGITVEGFLRLMQLFIEK 744
            V+ +V +PPE T DNV+  I DSSA   +R QL  ++  AD I ++Y V  PET   + +FWLP I    +  PVV+V NKID    G D   +  L  ++ P+ + +K     +ECS+   L V +VF+ A  A L+P APLYD++   ++P    A++R+F++ D D+DGIL+D+ELN FQ   +   L ++++  +K ++               E + +G+   G+T  GFL L +LFI++
Sbjct:   36 VVPEVTIPPEVTGDNVTTYIVDSSARLENRGQLEAEIRKADVICIVYAVNVPETFERIPSFWLPYIRSLGRNVPVVLVGNKIDLR--GKDNLTNERLKTEVMPIMDEFKEVETCVECSAKELLNVSEVFYFAQKAVLHPTAPLYDSREHVMKPACIEALKRIFKLCDTDKDGILNDEELNEFQRKCFNSPLQQQELEGVKNVVR--------------ENSTDGVNENGLTESGFLFLHKLFIQR 264
[Close]
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Match: A0A8J5C427_ZINOF (Miro domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C427_ZINOF)

HSP 1 Score: 153 bits (387), Expect = 2.030e-41
Identity = 93/257 (36.19%), Postives = 144/257 (56.03%), Query Frame = 1 
Query:    4 VPPVMTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTRPETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQMAPLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERLRPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKKILEKLAIPEIRGGAVLVEEAIEGIGG-GITVEGFLRLMQLFIEKKQVHNGGSL 771
            VP V+    LP +   D V  TI D+S+    + +LI   ++AD IV+ Y   RP TL  L T+WLP + R     PV++V  K+D      D+    SL Q MAP+ ++++     +ECS++ Q+ VQ+VF++A  A L+P APL+D + + L+P   RA++R+F + D DRDG LSD ELN FQ   +   L   +IV +K++++              E+  EG+   G+T+ GFL L  LFIE+ ++    S+
Sbjct:   48 VPHVLPPTRLPSDYYPDRVPITIIDTSSRPEHKAKLIADCKAADVIVLTYACDRPSTLDRLSTYWLPELRRLEVKVPVLVVGCKLDLR----DDPQQVSLDQVMAPIMQQFREIETCIECSALRQIQVQEVFYYAQKAVLHPTAPLFDQETQSLKPRCTRALKRIFILCDNDRDGALSDAELNNFQVRCFNAPLQPSEIVGVKRVVQ--------------EKIPEGVNDRGLTLTGFLFLHALFIERGRLETTWSV 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54793.12877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAM1_9PHAE2.880e-9562.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB08_ECTSI2.320e-9362.06Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculo... [more]
A0A4S8I7W8_MUSBA3.150e-4439.11Miro domain-containing protein n=1 Tax=Musa balbis... [more]
A0A4S8I7M5_MUSBA7.420e-4439.11Miro domain-containing protein n=1 Tax=Musa balbis... [more]
A0A175YKF2_DAUCS7.690e-4337.10Miro domain-containing protein n=1 Tax=Daucus caro... [more]
A0A843XFR1_COLES2.490e-4239.11Miro domain-containing protein n=1 Tax=Colocasia e... [more]
A0A3N6RJ61_BRACR2.660e-4236.69Miro domain-containing protein n=1 Tax=Brassica cr... [more]
A0A0K9QDY0_SPIOL3.260e-4238.31Mitochondrial Rho GTPase n=4 Tax=Chenopodiaceae Ta... [more]
A0A1Y3NAR0_PIRSE1.150e-4135.92Mitochondrial Rho GTPase 1 n=1 Tax=Piromyces sp. (... [more]
A0A8J5C427_ZINOF2.030e-4136.19Miro domain-containing protein n=1 Tax=Zingiber of... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54793contigH-elongata_contig54793:372..3773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.4
Seed ortholog evalue7.8e-79
Seed eggNOG ortholog2880.D8LB08
Preferred nameRHOT2
KEGG koko:K06883,ko:K07870,ko:K07871
KEGG Pathwayko04137,ko04214,map04137,map04214
GOsGO:0000001,GO:0000003,GO:0000166,GO:0000226,GO:0000287,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0008088,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009966,GO:0009987,GO:0010033,GO:0010154,GO:0010570,GO:0010646,GO:0010821,GO:0010970,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0019867,GO:0019896,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0030154,GO:0030705,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032592,GO:0032865,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033043,GO:0033993,GO:0034640,GO:0034643,GO:0035639,GO:0035794,GO:0036094,GO:0036211,GO:0040007,GO:0040008,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0046872,GO:0046902,GO:0046907,GO:0046928,GO:0047497,GO:0048308,GO:0048311,GO:0048316,GO:0048468,GO:0048489,GO:0048583,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050896,GO:0051046,GO:0051049,GO:0051056,GO:0051128,GO:0051179,GO:0051234,GO:0051270,GO:0051588,GO:0051640,GO:0051641,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0055081,GO:0055088,GO:0055091,GO:0060237,GO:0060341,GO:0060560,GO:0060632,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072384,GO:0090559,GO:0097159,GO:0097190,GO:0097305,GO:0097345,GO:0097367,GO:0097479,GO:0097480,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:0098930,GO:0099003,GO:0099098,GO:0099111,GO:0099177,GO:0140056,GO:1900428,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1902108,GO:1902110,GO:1902513,GO:1902531,GO:1902686,GO:1903338,GO:1903530,GO:1905710,GO:1990456
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG1707@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04031
Hectar predicted targeting categoryother localisation
Exons7
Model size780
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54793.12877.1prot_H-elongata_contig54793.12877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54793 387..3773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.5442123-UTR-H-elongata_contig54793:371..3861622930893.5442123-UTR-H-elongata_contig54793:371..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54793 372..386 +
1691679614.6869135-UTR-H-elongata_contig54793:371..3861691679614.6869135-UTR-H-elongata_contig54793:371..386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54793 372..386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.5618253-CDS-H-elongata_contig54793:386..4561622930893.5618253-CDS-H-elongata_contig54793:386..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 387..456 +
1691679614.7018957-CDS-H-elongata_contig54793:386..4561691679614.7018957-CDS-H-elongata_contig54793:386..456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 387..456 +
1622930893.580823-CDS-H-elongata_contig54793:941..10851622930893.580823-CDS-H-elongata_contig54793:941..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 942..1085 +
1691679614.713276-CDS-H-elongata_contig54793:941..10851691679614.713276-CDS-H-elongata_contig54793:941..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 942..1085 +
1622930893.6010368-CDS-H-elongata_contig54793:1492..15751622930893.6010368-CDS-H-elongata_contig54793:1492..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 1493..1575 +
1691679614.7228534-CDS-H-elongata_contig54793:1492..15751691679614.7228534-CDS-H-elongata_contig54793:1492..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 1493..1575 +
1622930893.6182458-CDS-H-elongata_contig54793:2299..23651622930893.6182458-CDS-H-elongata_contig54793:2299..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 2300..2365 +
1691679614.7331197-CDS-H-elongata_contig54793:2299..23651691679614.7331197-CDS-H-elongata_contig54793:2299..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 2300..2365 +
1622930893.636777-CDS-H-elongata_contig54793:2808..28831622930893.636777-CDS-H-elongata_contig54793:2808..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 2809..2883 +
1691679614.7419589-CDS-H-elongata_contig54793:2808..28831691679614.7419589-CDS-H-elongata_contig54793:2808..2883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 2809..2883 +
1622930893.6533077-CDS-H-elongata_contig54793:3279..34411622930893.6533077-CDS-H-elongata_contig54793:3279..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 3280..3441 +
1691679614.7525804-CDS-H-elongata_contig54793:3279..34411691679614.7525804-CDS-H-elongata_contig54793:3279..3441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 3280..3441 +
1622930893.674923-CDS-H-elongata_contig54793:3608..37731622930893.674923-CDS-H-elongata_contig54793:3608..3773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 3609..3773 +
1691679614.763037-CDS-H-elongata_contig54793:3608..37731691679614.763037-CDS-H-elongata_contig54793:3608..3773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54793 3609..3773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54793.12877.1

>prot_H-elongata_contig54793.12877.1 ID=prot_H-elongata_contig54793.12877.1|Name=mRNA_H-elongata_contig54793.12877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
MTDVHLPPEETDDNVSCTISDSSALSRDRQQLIEKMESADSIVVLYDVTR
PETLTHLDTFWLPLIERSAQATPVVIVRNKIDTLEGGFDEQASSSLIQQM
APLEERYKFFHISLECSSVIQLGVQQVFHHALSAALYPIAPLYDTKAERL
RPGFDRAVRRLFRIYDADRDGILSDDELNTFQYDAYQLYLSEEDIVSLKK
ILEKLAIPEIRGGAVLVEEAIEGIGGGITVEGFLRLMQLFIEKKQVHNGG
SLGS*
back to top

mRNA from alignment at H-elongata_contig54793:372..3773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54793.12877.1 ID=mRNA_H-elongata_contig54793.12877.1|Name=mRNA_H-elongata_contig54793.12877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3402bp|location=Sequence derived from alignment at H-elongata_contig54793:372..3773+ (Himanthalia elongata Himel1 dioecious)
CAGGTGCCCCCCGTGATGACGGACGTGCACCTCCCTCCCGAAGAGACTGA
TGACAATGTGTCATGCACCATCAGCGACAGTTCCGGTGAGAAAAATGATG
ACCCATGCCTGGAACAGAGCACTACATCGGAAGTCTGACATCAACCCCCA
ATCAAAATATCAATGTAAACAAGCCCAATCGAACCACACGACGAACCATC
AGTAGGTTCCGACGGATGCCCTGACATAAAGTCGTCCTCGGGTGATTTTA
TCATTCCATCCTTATTGCGAGACAAGCTATCCTACCGACTACCGGCGAAG
GAGAAAAAAACTTAAGGCGGTGTCTTCCGTTCGTGGCGTATTAATGTATG
TATGTATGTGTAGTGTCAAGCGCAAGACTGGGCGATGAAGTGGATCACGA
ACGAGCTTGATTTGGTCGATTCATGTCGCGCTGGCGCTACATCATACTAT
GATGTCGTCGGTAGATAATGGATGCCGTCGGTAGACCGTGGCTAAGTGAC
CAAACTTGTCCCCATCGTCAGCGACGAGAGCCCGTTGTTGAATGTTTGGG
TTCGTGCGCCCGGAACTCAGCCCTCTCGCGTGACAGGCAGCAGCTGATCG
AAAAGATGGAGAGCGCAGACTCGATCGTGGTCCTGTATGACGTGACGCGG
CCGGAGACTCTAACACACTTGGATACCTTCTGGCTCCCCCTCATCGAAAG
AAGCGCCCAGGCAAGTGTCTTACGAGGCGTTGGGCGTTCAGTATTAACTG
TTAACTGTTATATATTTTTTTGAAACGGACGGTGCGGTAGTCGCGCCCTC
TCCCGTCCGGCAGACTTACAGATCGATCAATACAGTGTGTTGAAAAAAGG
CAGCACGTTTGTTTTTTTTAACCTCACCTTTGTTTTGTTACGGCTGTTGC
TCTGTTCCTTGTTAAATGTTTCTGTTTTTCTTTGCTGCAAATCGTGAAGG
TGGGAATGGGTTTGGAGCCCTATTTCTGCTATTTACGGTGTCACACATCC
GCTGACTCTCTCATCGTAGGAGCGCGTGACACTCAAGCCGGGGCGATTTG
TATGGGGCGCCCGGTTTTACGTGACTACCCCAACCCAATGTATGATGTCT
GGTGTCTGGTGTATCAGGGAGCGCCCGTTGTGATCGTGCGGAACAAGATA
GACACGCTGGAGGGTGGATTTGATGAACAAGCCAGCTCCAGCCTGATACA
ACAGGTATGCGAAAAGTCGCATGCGATCAAATCATATGAAGGAAATAAGA
CATAGAAACTTCGACAGCCTTCGAGAGCGAGCTTGGCTGTTGTTTTCTTG
ATAAAACTAGTTCCGGTCGTCATCGCAGGTGACGTTCTTCCTCGAGGGCG
GTCAAGTTCTTACCGTTTGGAGCGTTGACGCGCTCGAATGGAAGGATTAT
GCAATCGCACCTTGAATACTGCCGCGTAGGAGATGTACTCATTCCCTTCC
TACGAAAAGCAGCCTCGAACATCAAGCCAATATATGTGCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCTTTCCTTCCCCCCCTCCTTCGTCCC
CCTTGTCTCTCCACCNNNNNNNNNNCTACAAAAAACACCCCCCAAACCCA
CCCCAATATCTGTGCCCCCCCCCCCCCCCCTCTAACACGCCCCCTCGCTT
TTCTTCGTACCACCGTTGGTGAGGCTTCTTGAACACGATCGCTAAATCTT
GCATCATAATGCTGTGTTTTTATGAAAATCCTCCGAACATCCACACCTTC
TTAGCACCATGAGAGGTGTGGTCCAGGGGACCAAGTATCGTCGGGTTCGA
ATGTGAACATTACTACATTTACGCTCAAAATATTTTCGTACAGTATGTGA
TTATTCGTGTTCCCCGGCGGTAACTTCATCGGGGCGGTGGTTCATGCCGG
GGATCTTGTTGTGGGTCGAATTCCCCAGATGGCGCCCCTGGAGGAGCGGT
ACAAGTTCTTTCACATATCCCTGGAGTGCAGCTCCGTGATCCAGGTGCGT
GTAAATTTAATGAAATAGAGTGTCTTCTGGCTCTTGTGTCTGTGTTTCCG
AAATGAGGACAAACAACGCGAAGTGCCACCACACTACGGAATTACGCGTG
AATTTCGCACTGACGAGGCATACATATTTTATGACATACTGGTACACAAA
CCGGGGTCCATCCCCTTTCTTTCCTACTTCCCGCCCGAAAGGTTTGCGTC
TACTTTTCGGATCGCATCGGGAATAATTACCACACCCGGTCTGCGAAGAG
CTCACACCGCCTTTCTCTTATTTCCCCCCTCCTCCCGGTATTGGCCCCCC
TTTTGCATTTTGCGTCCAACTCCTGACCCGCTTGGTGTGGGGGTTTCCTA
ATATATTATTCGTCTTTATTTAATGGATCATTATGTGTGGTCACGGTCGT
CGGGGGAAACCTGCCGTGCTGACTCCTGTGCGTGCAGTTGGGCGTACAGC
AGGTGTTTCACCACGCTCTCAGTGCGGCACTGTACCCCATCGCCCCTCTC
TACGACACCAAGGTTTGTAATAGCAACAAGTTGCAACATACACGATCTCT
GTTTGAATATATATTCGTTTCATCTGCGCCTTTGAAAATAGTGTCTAGTA
CAGTCAGTAGTAAGGTAACCCCCTCCACCGATGATATGAAAAGGAGATAA
ACGGTCATTGTTTTCATGTTTTGGAGTATTTATTTTTATTCAAAGCCGAT
AAAAACTCCTGCTCGTGGCTACCTTGTAAAACATTGTTTGGCAGCAATAA
TAGGCGAAAAATGAGTTTGTCTCATTGGGAAAGGGGGAAATACGTGTGCG
ATGATTGGTAAAGCGCGTGCGTTGGGGGTGTTAACCCTCCCTCTCGGACC
TTCTCAGGCCGAGCGTTCCTCGCTGCCGCAATCGTTGCATTTCTCTGGTG
TTGTACAGGCGGAACGCCTTCGACCGGGTTTCGATCGAGCGGTCCGACGG
TTGTTCCGAATCTACGACGCGGACCGCGACGGTATCTTAAGTGACGACGA
GCTCAATACTTTCCAGTACGATGCGTACCAGCTTTACTTGTCCGAAGAGG
ACATCGTCTCCCTCAAGAAGGTCGGTGCTTGTCTTTTTAAGTTTTGAGAT
GGCTTGGTGTGACAATCCTATTGATCTCTCACGCGTGCACCGAAATGTTG
AAGCCCGGTTCGTTGAGCTCTGTTAACAGTTTCCGTCTTGCATTTGGGAC
GTGGCGGTGTTATACTACAATCATGACATGGTTAAAGATTCTGGAGAAGC
TCGCGATCCCGGAGATTCGAGGGGGCGCCGTGCTGGTGGAGGAGGCAATC
GAAGGAATTGGGGGAGGCATTACTGTCGAGGGGTTTCTTCGGTTGATGCA
GCTCTTTATCGAGAAAAAACAGGTACATAACGGTGGTAGTCTCGGTTCGT
AA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54793:372..3773+

>mRNA_H-elongata_contig54793.12877.1 ID=mRNA_H-elongata_contig54793.12877.1|Name=mRNA_H-elongata_contig54793.12877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig54793:372..3773+ (Himanthalia elongata Himel1 dioecious)
ATGACGGACGTGCACCTCCCTCCCGAAGAGACTGATGACAATGTGTCATG
CACCATCAGCGACAGTTCCGATGACGGACGTGCACCTCCCTCCCGAAGAG
ACTGATGACAATGTGTCATGCACCATCAGCGACAGTTCCGCCCTCTCGCG
TGACAGGCAGCAGCTGATCGAAAAGATGGAGAGCGCAGACTCGATCGTGG
TCCTGTATGACGTGACGCGGCCGGAGACTCTAACACACTTGGATACCTTC
TGGCTCCCCCTCATCGAAAGAAGCGCCCAGGCAACCCTCTCGCGTGACAG
GCAGCAGCTGATCGAAAAGATGGAGAGCGCAGACTCGATCGTGGTCCTGT
ATGACGTGACGCGGCCGGAGACTCTAACACACTTGGATACCTTCTGGCTC
CCCCTCATCGAAAGAAGCGCCCAGGCAACGCCCGTTGTGATCGTGCGGAA
CAAGATAGACACGCTGGAGGGTGGATTTGATGAACAAGCCAGCTCCAGCC
TGATACAACAGCGCCCGTTGTGATCGTGCGGAACAAGATAGACACGCTGG
AGGGTGGATTTGATGAACAAGCCAGCTCCAGCCTGATACAACAGATGGCG
CCCCTGGAGGAGCGGTACAAGTTCTTTCACATATCCCTGGAGTGCAGCTC
CGTGATCCAGATGGCGCCCCTGGAGGAGCGGTACAAGTTCTTTCACATAT
CCCTGGAGTGCAGCTCCGTGATCCAGTTGGGCGTACAGCAGGTGTTTCAC
CACGCTCTCAGTGCGGCACTGTACCCCATCGCCCCTCTCTACGACACCAA
GTTGGGCGTACAGCAGGTGTTTCACCACGCTCTCAGTGCGGCACTGTACC
CCATCGCCCCTCTCTACGACACCAAGGCGGAACGCCTTCGACCGGGTTTC
GATCGAGCGGTCCGACGGTTGTTCCGAATCTACGACGCGGACCGCGACGG
TATCTTAAGTGACGACGAGCTCAATACTTTCCAGTACGATGCGTACCAGC
TTTACTTGTCCGAAGAGGACATCGTCTCCCTCAAGAAGGCGGAACGCCTT
CGACCGGGTTTCGATCGAGCGGTCCGACGGTTGTTCCGAATCTACGACGC
GGACCGCGACGGTATCTTAAGTGACGACGAGCTCAATACTTTCCAGTACG
ATGCGTACCAGCTTTACTTGTCCGAAGAGGACATCGTCTCCCTCAAGAAG
ATTCTGGAGAAGCTCGCGATCCCGGAGATTCGAGGGGGCGCCGTGCTGGT
GGAGGAGGCAATCGAAGGAATTGGGGGAGGCATTACTGTCGAGGGGTTTC
TTCGGTTGATGCAGCTCTTTATCGAGAAAAAACAGGTACATAACGGTGGT
AGTCTCGGTTCGTAAATTCTGGAGAAGCTCGCGATCCCGGAGATTCGAGG
GGGCGCCGTGCTGGTGGAGGAGGCAATCGAAGGAATTGGGGGAGGCATTA
CTGTCGAGGGGTTTCTTCGGTTGATGCAGCTCTTTATCGAGAAAAAACAG
GTACATAACGGTGGTAGTCTCGGTTCGTAA
back to top