mRNA_H-elongata_contig54781.12875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54781.12875.1
Unique NamemRNA_H-elongata_contig54781.12875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54781.12875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54781contigH-elongata_contig54781:268..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.4086847-UTR-H-elongata_contig54781:267..3151622930893.4086847-UTR-H-elongata_contig54781:267..315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54781 268..315 +
1691679614.6484056-UTR-H-elongata_contig54781:267..3151691679614.6484056-UTR-H-elongata_contig54781:267..315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54781 268..315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930893.4236703-CDS-H-elongata_contig54781:315..6271622930893.4236703-CDS-H-elongata_contig54781:315..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54781 316..627 +
1691679614.6589248-CDS-H-elongata_contig54781:315..6271691679614.6589248-CDS-H-elongata_contig54781:315..627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54781 316..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54781.12875.1prot_H-elongata_contig54781.12875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54781 316..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54781.12875.1

>prot_H-elongata_contig54781.12875.1 ID=prot_H-elongata_contig54781.12875.1|Name=mRNA_H-elongata_contig54781.12875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MGNSIPLEGLHSISSFIVISPVKSGNIRKIYLEIHTLLQGIFYFSILIFI
GVRLSSAYFAFCDCIAHVYSTDSKKQAYNNWSMGLLAKYQRTLGGKRHRY
GIA*
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mRNA from alignment at H-elongata_contig54781:268..627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54781.12875.1 ID=mRNA_H-elongata_contig54781.12875.1|Name=mRNA_H-elongata_contig54781.12875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig54781:268..627+ (Himanthalia elongata Himel1 dioecious)
CAACAACAACTGTATACTATATAATATCCCTTAGTACTGGAGAAGGGGAT
GGGTAACTCCATCCCCTTAGAGGGACTGCATTCAATATCTTCCTTTATCG
TCATTTCCCCTGTGAAGTCGGGAAATATTCGCAAAATATATCTAGAAATA
CACACTCTACTCCAAGGTATATTTTACTTTAGTATACTCATATTCATAGG
CGTGAGGTTAAGCAGTGCGTATTTTGCTTTCTGTGACTGTATCGCACATG
TCTACTCTACCGATAGTAAAAAACAGGCGTACAATAATTGGTCCATGGGA
CTGCTCGCTAAGTATCAGCGGACTCTCGGTGGTAAACGCCATCGGTATGG
AATTGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig54781:268..627+

>mRNA_H-elongata_contig54781.12875.1 ID=mRNA_H-elongata_contig54781.12875.1|Name=mRNA_H-elongata_contig54781.12875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig54781:268..627+ (Himanthalia elongata Himel1 dioecious)
ATGGGTAACTCCATCCCCTTAGAGGGACTGCATTCAATATCTTCCTTTAT
CGTCATTTCCCCTGTGAAGTCGGGAAATATTCGCAAAATATATCTAGAAA
TACACACTCTACTCCAAGGTATATTTTACTTTAGTATACTCATATTCATA
GGCGTGAGGTTAAGCAGTGCGTATTTTGCTTTCTGTGACTGTATCGCACA
TGTCTACTCTACCGATAGTAAAAAACAGGCGTACAATAATTGGTCCATGG
GACTGCTCGCTAAGTATCAGCGGACTCTCGGTGGTAAACGCCATCGGTAT
GGAATTGCATGAATGGGTAACTCCATCCCCTTAGAGGGACTGCATTCAAT
ATCTTCCTTTATCGTCATTTCCCCTGTGAAGTCGGGAAATATTCGCAAAA
TATATCTAGAAATACACACTCTACTCCAAGGTATATTTTACTTTAGTATA
CTCATATTCATAGGCGTGAGGTTAAGCAGTGCGTATTTTGCTTTCTGTGA
CTGTATCGCACATGTCTACTCTACCGATAGTAAAAAACAGGCGTACAATA
ATTGGTCCATGGGACTGCTCGCTAAGTATCAGCGGACTCTCGGTGGTAAA
CGCCATCGGTATGGAATTGCATGA
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