mRNA_H-elongata_contig54731.12866.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI) HSP 1 Score: 364 bits (934), Expect = 3.950e-118 Identity = 177/228 (77.63%), Postives = 195/228 (85.53%), Query Frame = 1
Query: 235 LAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCGAKYCRRDCQVRDWKTNHKVMCRQLREMRAGP-GGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKDALQLNLDDT 915
LAG+KATAR PPGLCLA+CQ A C TE P G F CC+KCGAKYC R+CQV DWK +HK MC QL+EMR G GG R PLDRQSVVARVL +VRLYLCPFAVCHGEA GRGFVFVQTPN VLELEYLRPVNSNGRRLDRS+ILHFLSMGEFVDAV++DDFEL VIR PL+ AV++YD K E+VVL RARCGYMAVV +PLVP + VCRQL +EY+EKDALQLNLDDT
Sbjct: 73 LAGEKATARAPPGLCLASCQRAACNKTEEPTGRPFCCCSKCGAKYCSRECQVIDWKKDHKAMCGQLKEMRGGDAGGGRAPLDRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEYKEKDALQLNLDDT 300
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA) HSP 1 Score: 277 bits (709), Expect = 6.450e-85 Identity = 135/229 (58.95%), Postives = 170/229 (74.24%), Query Frame = 1
Query: 226 IVKLAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCGAKYCRRDCQVRDWKTNHKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKDALQLNLDD 912
+ +L+GDKA A+ PPGL L CQ C NTET G F C+ CG++YC R+CQV DWK+ HK MC QL+ + AG +D++ V+R LSKVRLYLCPFAVCHG A G GFVFVQ+PN++LEL Y+ PV S GR L RSL+LH++S GEFV+AVM+DDFEL +R PL+ A+ A D ++EVVVL+RARCGY+ VV +PLVPE VCR LA +Y +DALQLNLD+
Sbjct: 54 LFELSGDKAVAKAPPGLQLHKCQKPTCENTETMGGKPFNQCSGCGSRYCCRECQVSDWKSLHKPMCAQLKALSAG-----AKVDKRDAVSRTLSKVRLYLCPFAVCHGSAIGPGFVFVQSPNSLLELNYMGPVTSAGRALQRSLVLHYMSPGEFVEAVMQDDFELMTVRTPLEAAIAAADAQREVVVLMRARCGYICVVTMPLVPEIAVCRALAGDYEGRDALQLNLDE 277
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A448ZP53_9STRA (MYND-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP53_9STRA) HSP 1 Score: 165 bits (417), Expect = 7.830e-43 Identity = 88/197 (44.67%), Postives = 127/197 (64.47%), Query Frame = 1
Query: 346 CAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLD---RQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY---REKDALQLNLDD 912
CA+CG A YC R+CQ DWK HK+ C + +TPLD ++++ + +++R Y+CP+AV G GF+F+Q+ T+ +L P + GR + RS++LHFL++GEF V +DDFEL ++R PLK AV++YDP+KEVV+L R RCG MA+ LVP++P+C+QLA +Y ALQLNLDD
Sbjct: 66 CARCGVAAYCSRECQAGDWKAGRHKMACPSYARVA------KTPLDGDTKKAIRNELFARIRFYVCPYAVHRTAELGSGFLFLQSDRTLRDLSPYIPKDCTGRAIVRSVLLHFLTLGEFDSEVCKDDFELAMMRTPLKEAVESYDPEKEVVLLCRFRCGNMALGRAVLVPDYPICKQLAKDYYTGNTAGALQLNLDD 256
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA) HSP 1 Score: 156 bits (395), Expect = 3.900e-40 Identity = 81/194 (41.75%), Postives = 122/194 (62.89%), Query Frame = 1
Query: 346 CAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD---ALQLNLDD 912
C KC A YC RDCQ+ DWKT HK+ C + P +T +Q + + ++R Y+CP+AV GRGF+F+QT T+ +L P + G + RS++LHFL++GEF V ++DFEL ++R PLK A+D+Y+ +KEVV+L R RCG M++ LVP++ +C++L +Y ++ A+QLNLDD
Sbjct: 36 CGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARVAQTPISDKT---KQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQTDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDYYAENPAGAVQLNLDD 226
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA) HSP 1 Score: 156 bits (394), Expect = 9.490e-40 Identity = 82/208 (39.42%), Postives = 126/208 (60.58%), Query Frame = 1
Query: 304 CGNTETPNGPAFLCCAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD---ALQLNLDD 912
C T C+KCG A YC R+CQ++DWK HK+ C + P +T ++++ + +++R Y+CP+AV GRGF+F+QT T+ ++ P + G + RS++LHFL++GEF V R DFEL ++R PLK AV+ YD ++EVV+L R RCG M++ LVP++ +C++L +Y ++ ALQLNLDD
Sbjct: 42 CFGCGTKTAEKLSKCSKCGVAAYCSRECQIQDWKAGRHKMACPSYARVAKAPLCDKT---KETIRNELFARIRFYVCPYAVFRTAELGRGFLFLQTDRTLEDMSLYIPKDCTGHTITRSVLLHFLTLGEFDSEVCRTDFELALMRTPLKEAVETYDTEQEVVLLCRYRCGNMSLGRAALVPDYRICKKLGQDYYSENSAGALQLNLDD 246
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S2A9V4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9V4_TRICV) HSP 1 Score: 146 bits (368), Expect = 6.880e-36 Identity = 88/195 (45.13%), Postives = 115/195 (58.97%), Query Frame = 1
Query: 361 AKYCRRDCQVRDWKTN----HKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRL--DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYRE-----KDALQLNLDD 912
A YC RDCQV DWK+ HK C R + RT D+ + VL +VR Y P+AV GRGF+FVQ+ T+ EL P +GR L +RS+++HFL+MGE+ V RDDFE+ +R LK AV AYD +KE VLVR RCG++AV LVPE+ VC+ L EY + + ++QLNLDD
Sbjct: 75 APYCSRDCQVSDWKSGTGGGHKHHCASYRRV-GTEFALRTDDDKAAARDEVLRRVRFYAFPYAVHRSSTLGRGFLFVQSGCTLAELSLPNPKRPDGRPLGRERSVLMHFLTMGEYDLEVCRDDFEMASVRGELKDAVKAYDERKEAAVLVRFRCGHVAVGLATLVPEYGVCKALGREYYQGTVGAEGSVQLNLDD 268
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.060e-36 Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = 1
Query: 145 AGPTLF*QSYHPATPSPLQ*FPRLYIYIVKLAGDKATARVPPGLCLANCQHADCGNTETPNGPAFLCCAKCG-AKYCRRDCQVRDWKTN-HKVMCRQLREMRAGPGGYRTPLDRQSVV-ARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDR-SLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREKD----ALQLNLDD 912
A T Q+ +TPS L+ ++ +L ++A V P +C H CG E+ N C +KC AKYC RDCQV DWK HK++C+ + + + D ++ V A + +++R Y CP+AV G+GF+FVQ+ ++ +L P + G + R S+++HFL++GE+ V RDDFE+ R L V+ YD +KEVV+L R RCG++AV LVP++ +C+QL +Y + + A+QLNLD+
Sbjct: 22 AASTANIQNPLASTPSSLR-----WVQAFELGYNEAPKTVEP-----SCFH--CGKHESENAKLSKC-SKCQTAKYCSRDCQVNDWKDGRHKLVCKSYQRLN---DDFDNNADAKAAVRAELYARIRFYACPYAVHKTTQLGKGFLFVQSNMSLRDLSIPIPKDVTGVAMPRRSILMHFLTLGEYDSEVCRDDFEMAEARTKLSQIVEEYDEEKEVVLLYRMRCGHVAVGRAVLVPDYGICKQLGRDYYDSNNSAGAVQLNLDE 269
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA) HSP 1 Score: 142 bits (359), Expect = 1.650e-34 Identity = 87/213 (40.85%), Postives = 124/213 (58.22%), Query Frame = 1
Query: 346 CAKCG-AKYCRRDCQVRDWK------TNHKVMCRQLREMRAGPGGYRT-PLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEY---LRPVNSNGRRL------DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY------REKDALQLNLDDT 915
C+KC A+YC RDCQV DWK T HK C L+ R G T P D+ S ++ ++R Y CP+AV GRGF+F+Q +T+ E+ L P+++ RS++LH+L++GEF V RDDFEL +R LK AVD++D +K++VVL+R RCG++AV PLVP++ +C+ L +Y A+QLNLDD
Sbjct: 72 CSKCHVARYCSRDCQVADWKKSPNGGTAHKFTCAALK--RVGIHMQITSPDDQASARQDIVFRIRFYACPYAVNKSITLGRGFLFLQGTSTLAEMSLPTTLNPLHNXXXXXXXXXVKQRSVLLHYLTLGEFDSEVCRDDFELATVRDRLKQAVDSHDIEKDMVVLMRFRCGHVAVGTAPLVPDYGLCKSLGQQYYGTGEGASSGAIQLNLDDV 282
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: A0A1Z5JUW9_FISSO (MYND-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUW9_FISSO) HSP 1 Score: 139 bits (351), Expect = 5.730e-34 Identity = 86/195 (44.10%), Postives = 122/195 (62.56%), Query Frame = 1
Query: 346 CAKCG-AKYCRRDCQVRDWKTNHKVMCRQLREMRAGPGGYRTPLDRQSVVAR--VLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRLDRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEYREK---DALQLNLDD 912
C++C A YC ++CQ++DWK HK C + + A G + TP D S AR VL ++RLY P+AV +A GRGF+F+Q+ T+ L GR +RS++LH+L++GE+ V RDDFEL +R L+ AV+ YD ++++VVL+R RCG++AV IPL EF VC QL EY + AL+L LDD
Sbjct: 48 CSQCHVATYCSKECQIQDWKQRHKKYCAAYQRIDA-QGRWNTP-DDDSAHARHHVLHQIRLYAMPYAVYQMQALGRGFLFIQSTQTLAALTL------PGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLDD 232
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Match: B8BQB8_THAPS (MYND-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQB8_THAPS) HSP 1 Score: 138 bits (348), Expect = 4.420e-33 Identity = 85/221 (38.46%), Postives = 126/221 (57.01%), Query Frame = 1
Query: 289 CQHADCGNTETPNG-PAFLCCAKCG-AKYCRRDCQVRDWK-----TNHKVMCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGFVFVQTPNTVLELEYLRPVNSNGRRL--DRSLILHFLSMGEFVDAVMRDDFELEVIRKPLKVAVDAYDPKKEVVVLVRARCGYMAVVNIPLVPEFPVCRQLAVEY----REKDALQLNLDD 912
C H CG + G P C+KCG A YC RDCQV +WK HK +C + + + D+ S +LS++R Y P++V GRGF+F+Q+ +++ L P SNG++ RS++LH+L+M EF V +DFEL ++K LK AV++Y+ + EV VL+R RCG++AV PLVP+ +C+ L EY + A+QLN+DD
Sbjct: 57 CFH--CGKSAEEGGVPKLSRCSKCGVACYCSRDCQVTNWKGGDGVVGHKFLCAAYKRVGEDMMIIFSD-DKDSARQDILSRIRFYAFPYSVHKSSIVGRGFLFLQSDSSLAVLSLPAPTMSNGKKYPKQRSVLLHWLTMKEFSSEVCMEDFELASVQKELKSAVESYNEEVEVPVLMRFRCGHVAVGIAPLVPDIKLCKMLGKEYYGSGKGSGAVQLNIDD 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54731.12866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54731.12866.1 >prot_H-elongata_contig54731.12866.1 ID=prot_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp MCRQLREMRAGPGGYRTPLDRQSVVARVLSKVRLYLCPFAVCHGEAQGRGback to top mRNA from alignment at H-elongata_contig54731:828..3549+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54731.12866.1 ID=mRNA_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2722bp|location=Sequence derived from alignment at H-elongata_contig54731:828..3549+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54731:828..3549+ >mRNA_H-elongata_contig54731.12866.1 ID=mRNA_H-elongata_contig54731.12866.1|Name=mRNA_H-elongata_contig54731.12866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig54731:828..3549+ (Himanthalia elongata Himel1 dioecious)back to top |