mRNA_H-elongata_contig54718.12864.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 377 bits (969), Expect = 5.820e-130 Identity = 189/268 (70.52%), Postives = 209/268 (77.99%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDD-----SSSGDMSYRL 789
M+RT A+A ML A AL+V TPS+GL VI+DRTYTVEW S +RFEIDLYYCGS C+ED+CG+WVTALCPYG GCPDNEGDYD+VMPEPM TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A EYTVEFDYDNGVGSSVDRF IDLY A G GDCGTYV SICDKP+IGCKDSMGDYDVEIP DT AG YKIRV RFEDD L+ CS F + EGD D + +SYR
Sbjct: 1 MTRTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 369 bits (946), Expect = 1.250e-126 Identity = 186/259 (71.81%), Postives = 209/259 (80.69%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDM 777
M+RT A+A +ML A ALEV+TPS L+V++DRTYTVEW DSG RFEIDLY+CGS C+ED CG+WVTALCPYG GCPDNEGDYD+VMPEPMS S SGYKVRVMDV+DE +DCSD FYLMAS+++P G E G L+VTSPAEGD A AGEEYTVEFDYDNGVGS VDRF IDLY A G GDCGTYV SICDKPSIGCKDSMGDYDVEIP DT AG YKIRVGRFED++L+ CS F ++ GD D+S S D
Sbjct: 1 MARTGFVALACAMLG-AANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD-DESMSYDF 256
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 358 bits (918), Expect = 4.420e-122 Identity = 169/245 (68.98%), Postives = 197/245 (80.41%), Query Frame = 1
Query: 52 ARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYR 786
A ALEV+TP+EG +V++ R YTVEW S +R+EIDLYYCGS C+EDECG+WVTALCPYG GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+D+ DCSDEFYLMA E+P GD GP ++VTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY A+GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED AGMY IRVG FEDD ++ CSD FE++ D D GD+
Sbjct: 5 ASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGAD-DSPDDGDLDME 248
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 355 bits (911), Expect = 2.830e-121 Identity = 179/263 (68.06%), Postives = 205/263 (77.95%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYRL 789
M RT A+A ML A ALEV+TP+ G +V+S R YTVEW+ S RFEIDLYYC S C+EDECGEWVTALCPYG GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+DE DCSDEFYLMA ++P D GP ++VTSP+ GD A AGEEYTVEFDYDNG+GSSV RF IDLY A+GSGDCGT++ ++CDKP+IGCKDSMGDYDVEIPED AGMY IRVG FED+ ++ CSD FE++ G D SS MSYR
Sbjct: 2 MVRTGFVALACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL---GADDSS--MSYRF 258
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 327 bits (839), Expect = 2.200e-110 Identity = 167/264 (63.26%), Postives = 204/264 (77.27%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYE-ASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGDMSYRL 789
M+RT A+A ML A ALEV++P+ G+ VI+DRTYTVEW G S SRFEIDLYYCGS+C+EDECG+WVTALCPYG+ GCPD +GDYD+VMPEPM+ TS SGYKV V D NDES + CS +F L+AS ++P G E G +L+VTSP++GD A+AG YTVE+DY+NG+GSS DRF IDLY +G+GDCGTYV ++CDKPSIGC DS GDYDVEIP DT AGMY +RVG F DD +FDCS+ FE++ + DMS RL
Sbjct: 1 MARTAFAALAFGMLG-AANALEVVSPAAGISVIADRTYTVEWT-GTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV------NDRTDMSMRL 254
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 324 bits (830), Expect = 4.780e-109 Identity = 163/249 (65.46%), Postives = 194/249 (77.91%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEG 747
M+RT A+A ML A ALEV++P+ G +V++D YTVEW SG R++IDLYYCGS C+EDECG+WVTALCPYG GCPD +GDYDVVMPEPM TS SGYKV V D +DESD CS +F L+AS E+P D G +SVTSP++GD A+AG EYTVEFDYDNG+GSSV+RF IDLY + GSGDCGTYV +ICDKPSIGCKDS GDYDV IP T +GMY IRVG FEDDD++ CSD+FE++ G
Sbjct: 1 MARTAFAALAFGMLG-AANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGG 245
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 318 bits (815), Expect = 9.760e-107 Identity = 157/250 (62.80%), Postives = 196/250 (78.40%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGD 750
M+RT AVA ML+ A ALEV++P G+ V++DR YTVEW G + RFEIDLYYC S+C++D CG+WVTALCPYG+ GCPD+ GDYD++MPEPMS TS SGYKV V + DESD+ CSD+F L+AS+++P G E G +L+VTSP++GD A+AGE YTVE+DY+NG GSS DRF +DLY G+GDCGTYV ++CD+PSIGC DS GDYDVEIP DT AGMY IRVG F+D+ ++DCSD FEV D
Sbjct: 1 MARTAFAAVAFGMLS-AANALEVVSPDGGISVLADRAYTVEWT-GTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 317 bits (812), Expect = 1.910e-106 Identity = 160/236 (67.80%), Postives = 181/236 (76.69%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDS----MGDYDVEIPEDTTAGMYKIRVGRF 696
M+RT A+A ML A AL+V TPS+GL VI+DRTYTVEW S +RFEIDLYYCGS C+ED+CG+WVTALCPYG GCPDNEGDYD+VMPEPMS TSGSGYKVRV D++DE D DCSDEFYL+AS E+P VGDEDGPTL VTSPA GD+A EYTVEFDYDNGVGS VDRF IDLY A G GDCGTYV SICDKP+IGCKDS G + V+ G + + V R+
Sbjct: 2 MARTGFVALACGMLG-AANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 294 bits (753), Expect = 4.720e-94 Identity = 145/196 (73.98%), Postives = 159/196 (81.12%), Query Frame = 1
Query: 187 VEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEGDGDDSSSGD 774
VEDECGEWVTALCPYGS GCPDNEGDYD+VMPEPMS TSGSGYKVRV DV+ D DCSDEFYLMAS E+PVVG D P L VTSP+ GD A AG EYTVEFDYDNGVGS VDRFKIDLY G+GDCGT+V+++CDK +IGCKDSMGDYDVEIPE GMY IRVGRFEDD L+ CS FE++ SSSG+
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG-----SSSGE 202
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 266 bits (679), Expect = 4.200e-86 Identity = 143/249 (57.43%), Postives = 166/249 (66.67%), Query Frame = 1
Query: 1 MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRFEIDLYYCGSYCVEDECGEWVTALCPYGSTGCPDNEGDYDVVMPEPMSDTSGSGYKVRVMDVNDESDVDCSDEFYLMASDESPVVGDEDGPTLSVTSPAEGDVAIAGEEYTVEFDYDNGVGSSVDRFKIDLYEASGSGDCGTYVISICDKPSIGCKDSMGDYDVEIPEDTTAGMYKIRVGRFEDDDLFDCSDAFEVIEG 747
M+RT A+A ML ALEV +P+ G ++++ + TVEW G S RF+IDLYYCGS C+EDECG+WVTALCPYG GCPD +GDYDVVMPEPM TS SGYKV V D +DESD+ CS EF L+AS FD+DNG GSSV+RF IDLY + GSGDCGTYV SICDK SIGCKDS GDYDV IP DT +GMY IRVG FED D+F CSD+FE+I G
Sbjct: 1 MARTAFAALAFGMLG-AVNALEVTSPAAGDMIVAASSTTVEWT-GTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVAS-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGG 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54718.12864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54718.12864.1 >prot_H-elongata_contig54718.12864.1 ID=prot_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp MSRTICFAVAVSMLARGARALEVITPSEGLVVISDRTYTVEWNDGDSGSRback to top mRNA from alignment at H-elongata_contig54718:1284..3851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54718.12864.1 ID=mRNA_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2568bp|location=Sequence derived from alignment at H-elongata_contig54718:1284..3851- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54718:1284..3851- >mRNA_H-elongata_contig54718.12864.1 ID=mRNA_H-elongata_contig54718.12864.1|Name=mRNA_H-elongata_contig54718.12864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig54718:1284..3851- (Himanthalia elongata Himel1 dioecious)back to top |