mRNA_H-elongata_contig54696.12862.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.280e-11 Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEE 153
QVPG D GG FAPVCRLQSI M+L IAAE D D + LDV+T FL AD+EE+
Sbjct: 387 QVPGRDWGGTFAPVCRLQSIRMLLAIAAEKDLDVIQLDVKTAFLYADIEED 437
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8 Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 162
QVPG D G APV RLQS+ M+L IAAE+D++ LDV+T FL AD+EE+V+V
Sbjct: 335 QVPGKDCDGTVAPVGRLQSVRMVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFV 388
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 8.150e-8 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 162
QVPG+D GG +APVCRLQSI M+ IA + + + +DV T FL AD+ E V+V
Sbjct: 782 QVPGLDCGGTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 835
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.880e-7 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 162
QVPG+D G +APVCR+QS+ M+ I E + +D++ DV T FL AD++EEV+V
Sbjct: 202 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 255
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9) HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7 Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 162
Q PG+D +FAPV RL+S+H++L IAA ++ LDV++ FL+ +++EEVYV
Sbjct: 993 QRPGVDYDEVFAPVARLESVHLLLAIAAXAGWEVHHLDVKSAFLNGELQEEVYV 1046
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 162
QVPG+D G +APVCR+QS+ M+ I E + +D++ DV T FL AD++EEV+V
Sbjct: 1223 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 1276
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 3.910e-7 Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELD--YDELILDVQTIFLDADVEEEVYV 162
QVPG+D G +APVCR+QS+ M+ I E + +D++ DV T FL AD++EEV+V
Sbjct: 1388 QVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQM--DVSTAFLYADIQEEVFV 1441
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A401H6Z2_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H6Z2_9APHY) HSP 1 Score: 53.9 bits (128), Expect = 5.340e-7 Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVY 159
QVPGID FAPV +L SI ++LT+AA D++ +DV+ ++L+ D+EEE+Y
Sbjct: 819 QVPGIDFNETFAPVAKLASIRLILTLAAHYDWELHQMDVKGVYLNGDLEEEIY 871
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 53.9 bits (128), Expect = 5.340e-7 Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 162
QVPG+D G +APVCRLQSI M+ IA + + + +DV T FL AD+ E V+V
Sbjct: 908 QVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 961
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 7.250e-7 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEEVYV 162
QVPG+D G FAPVCRLQSI M+ A + + + +DV T FL AD+ E V+V
Sbjct: 122 QVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFV 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54696.12862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54696.12862.1 >prot_H-elongata_contig54696.12862.1 ID=prot_H-elongata_contig54696.12862.1|Name=mRNA_H-elongata_contig54696.12862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp QVPGIDNGGIFAPVCRLQSIHMMLTIAAELDYDELILDVQTIFLDADVEEback to top mRNA from alignment at H-elongata_contig54696:798..959- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54696.12862.1 ID=mRNA_H-elongata_contig54696.12862.1|Name=mRNA_H-elongata_contig54696.12862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig54696:798..959- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54696:798..959- >mRNA_H-elongata_contig54696.12862.1 ID=mRNA_H-elongata_contig54696.12862.1|Name=mRNA_H-elongata_contig54696.12862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig54696:798..959- (Himanthalia elongata Himel1 dioecious)back to top |