mRNA_H-elongata_contig54681.12860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54681.12860.1
Unique NamemRNA_H-elongata_contig54681.12860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: D7G3L7_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.500e-91
Identity = 141/221 (63.80%), Postives = 165/221 (74.66%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGG-KNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASPEVVGS-VTEDVIPSESC 657
            M+I NCG EC+RMRYF+TYSQVYNN I NCG +DFV+   DGG KNGEG+YLGTSSNQWDDG NP+ EPDES +NH FKNHFDT+              GNEG+DIKEGS  NIVEDNYCTGQKDPNSACLD+RG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NND  G+ + + PQGA+C NDI G+  +  GS   E + P  SC
Sbjct:  161 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVM---DGGSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ--------------GNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEGSC 364          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 3.290e-85
Identity = 136/220 (61.82%), Postives = 163/220 (74.09%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASPEVVGS-VTEDVIPSESC 657
            M+I NCG EC+RMRYF+TYSQVYNN I NCG +D+V+  N   KNGEG+YLGTSSNQWDDG NP+ EPDES +NH FKNHFDT+              GNEG+DIKEG+  NIVEDNYCTGQKDPNSACLD+RG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NN   G+ + + PQGA+C NDI G+  +  GS   E + P +SC
Sbjct:  465 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDYVM--NGSSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ--------------GNEGIDIKEGARYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNGYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLKPEDSC 668          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 204 bits (520), Expect = 2.630e-61
Identity = 107/220 (48.64%), Postives = 140/220 (63.64%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDIN-GASPEVVGSVTEDVIPSESC 657
            M+++N G EC+R+RY++T +++++N   NCGV DF    N+GGKNGE +Y+GTSSNQWDDG NPT  PD S  N I  N F T               GNE VDIKEG+  N+VE N C+GQ+DPNSA  DSRG  NIFRYN + +N GA +R GG+T+DG  YGV+N+ Y NL+ NN + GV LM  PQ  +C N  +     +++GS      P  SC
Sbjct:  164 MSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKF--NNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTN--------------GNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSDNTEGDIMGSSAMSYDPELSC 367          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1F7IR59_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12 TaxID=1802061 RepID=A0A1F7IR59_9BACT)

HSP 1 Score: 191 bits (486), Expect = 4.100e-57
Identity = 106/220 (48.18%), Postives = 136/220 (61.82%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASP-EVVGSVTEDVIPSESC 657
            M I+N G EC+R+RY+   +++  N I +CG +D+    +DGGKNGEG+Y+GT+  Q DDG NPT++ DES  N I  N FDT+              GNE VDIKE S  NIVE+N CTGQKDP S  LDSRG  NIFRYN    N GA IR GG T+D     + NE YEN+++NN KGG+ +M  PQG +C N ++G      VG   ED  P++ C
Sbjct:   91 MTIKNAGGECVRLRYYAQNNEIAYNTITSCGRHDYKF--DDGGKNGEGVYIGTAPEQRDDGKNPTNDNDESNGNWIHHNFFDTQ--------------GNECVDIKENSKYNIVENNECTGQKDPESGGLDSRGGYNIFRYNNIYGNSGAGIRLGGDTVD---ENIMNEVYENIIVNNKKGGIKIMTAPQGKMCDNIMSGNDGGNAVGEYGEDYDPTKGC 291          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT)

HSP 1 Score: 194 bits (493), Expect = 1.510e-55
Identity = 99/220 (45.00%), Postives = 136/220 (61.82%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
            M ++N G ECLR+RYF T S++  N I NCG  DF+   N GGKNGEG+Y+GTS+ QW DG NPT++PDE++ N +  N+ DT+              GNE +DIKEG++ NI+E N C GQKD  S   DSRG  NIFRYN    ++G  IR GG +++G  YG +N+ YEN +++N  GG+     PQG IC N ++G  + +  G    +  P +SC
Sbjct:    1 MTLKNSGGECLRLRYFATKSEIAYNTIANCGAYDFLF--NAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQ--------------GNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTMSGNTTGDSAGGFASEFDPIKSC 204          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI001998BEE9 (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI001998BEE9)

HSP 1 Score: 189 bits (481), Expect = 1.730e-55
Identity = 105/220 (47.73%), Postives = 134/220 (60.91%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDIN-GASPEVVGSVTEDVIPSESC 657
            M  RN G ECLR+RYF+  S++  +   NCGV DF      GGKNGE +Y+GT+  Q  DG NPT++PD+S  N I  N+F+T+              GNE VDIKE ++NNIVE+N CTGQKDPNSA  DSRGS NIFRYNT+  N+GA +R GG T    T G+DN+ Y N++ +ND GG+     PQ  IC N IN     +  GS  +   P+  C
Sbjct:  146 MTFRNGGGECLRLRYFVQNSEIAQSTFLNCGVRDFRFKA--GGKNGEAIYIGTAPEQRGDGKNPTTDPDQSNNNWIHHNNFNTQ--------------GNECVDIKEAATNNIVENNTCTGQKDPNSAGFDSRGSGNIFRYNTSYGNVGAGVRLGGDTA---TDGIDNQVYANILHHNDAGGIKFQRAPQRTICGNTINDNRGGDATGSYPDRYNPTAPC 346          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI0019FF4931 (DUF1565 domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931)

HSP 1 Score: 185 bits (469), Expect = 2.130e-52
Identity = 102/224 (45.54%), Postives = 130/224 (58.04%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPND----GGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDI-NGASPEVVGSVTEDVIPSESC 657
            M  +N G ECLR+RYF   +++  +   NCG +D+   P      GGKNGE +Y+GTS+NQW DG NPT+EPD+S  N +  N  +T+              GNE VDIKEG++ NIVE N CTGQKD NSA LDSRG  N FRYN    N+G  +R GG  +DG  YG +N  Y+N++ +N  GGV  MV PQG IC N + N    +  G       P  SC
Sbjct:  159 MTFKNAGGECLRLRYFAQNNEIAYSTFLNCGQDDY---PGGEWAGGGKNGEAIYIGTSNNQWGDGKNPTNEPDQSNNNWVHNNFMNTQ--------------GNECVDIKEGATGNIVEYNECTGQKDENSAGLDSRGDGNTFRYNETYGNVGGGVRLGGALVDGEQYGKNNNVYDNIIYDNIAGGVKFMVTPQGKICGNTMWNNTGGDSFGDFANQFDPKASC 365          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1F7IHP9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_35_13 TaxID=1802055 RepID=A0A1F7IHP9_9BACT)

HSP 1 Score: 182 bits (462), Expect = 2.320e-52
Identity = 107/220 (48.64%), Postives = 132/220 (60.00%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
            MNI+N G EC+R+RYF   +++  N I  CG+ DF      GGKNGEG+Y+GT+  Q  DG NPTS+ DES  N I  N  +T+              GNE VDIKEGSS NIVE N CTGQKD  SA LDSRGS NIFRYN    N+GA +R GG   D    G++N+ YEN + NN  GG+     PQG IC N + G    + VGS  E+  P++SC
Sbjct:  191 MNIKNAGGECVRLRYFAQNNEIAYNSINRCGIVDFEFKG--GGKNGEGIYIGTAPEQLKDGKNPTSDIDESNNNLIHHNTINTQ--------------GNECVDIKEGSSGNIVEYNNCTGQKDKESAGLDSRGSKNIFRYNEVYGNLGAGVRLGG---DEDNDGINNDVYENTIKNNVSGGIKFQRAPQGKICGNKMEGNKGGDSVGSEAEEFNPTKSC 391          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A0G1AW46_9BACT (Secreted protein n=3 Tax=Candidatus Daviesbacteria TaxID=1752718 RepID=A0A0G1AW46_9BACT)

HSP 1 Score: 183 bits (465), Expect = 2.440e-52
Identity = 107/220 (48.64%), Postives = 130/220 (59.09%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
            M ++N G EC+R RYF T ++V +N + NCGV DF    N GGKNGEG+Y+GT+  Q  DG NPTS+ D+S  N I  N F+T+              GNE VDIKE SS NI+E+N CTGQKDPNSA LD+RGS NIFR N    N GA IR GG   D  + G  N  Y N + NN  GG+     PQG IC N  +G +S   VGS   D  P+  C
Sbjct:  171 MTLKNAGGECMRFRYFATKNEVASNTVTNCGVYDFKF--NAGGKNGEGVYIGTAPEQLTDGKNPTSDRDQSNDNWIHNNTFNTQ--------------GNECVDIKEASSGNIIENNKCTGQKDPNSAGLDTRGSKNIFRSNETYGNTGAGIRLGG---DATSDGTGNHIYNNKISNNTAGGIKFQRSPQGEICGNSFSGNSSGNSVGSYGSDYNPTSVC 371          
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM)

HSP 1 Score: 181 bits (459), Expect = 4.520e-52
Identity = 97/221 (43.89%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDG-GKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASP-EVVGSVTEDVIPSESC 657
            M IRN G EC+R+RY +T ++++ N   NCG  DF     DG GKNGE +Y+GTSS QWDDG NP+++PD S +N +  N+F T               GNE VDIKEG+++N+VE+N C GQ+DP S   D+RG  NI RYN + +N GA IR GG+ ++G  YGV NE Y N + +ND  G+ +M  PQ  +C N +   S   + G       P+  C
Sbjct:  170 MRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQF---DGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTR--------------GNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTDNSKGNITGESATFYDPATGC 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L7_ECTSI2.500e-9163.80FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JFC7_9PHAE3.290e-8561.82PPIase cyclophilin-type domain-containing protein ... [more]
UPI00036AEC552.630e-6148.64right-handed parallel beta-helix repeat-containing... [more]
A0A1F7IR59_9BACT4.100e-5748.18Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A1G2MDL9_9BACT1.510e-5545.00F5/8 type C domain-containing protein n=1 Tax=Cand... [more]
UPI001998BEE91.730e-5547.73Right-handed parallel beta-helix repeat-containing... [more]
UPI0019FF49312.130e-5245.54DUF1565 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A1F7IHP9_9BACT2.320e-5248.64Uncharacterized protein n=1 Tax=Candidatus Roizman... [more]
A0A0G1AW46_9BACT2.440e-5248.64Secreted protein n=3 Tax=Candidatus Daviesbacteria... [more]
A0A261GHV7_9GAMM4.520e-5243.89DUF1565 domain-containing protein n=1 Tax=Hahella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54681contigH-elongata_contig54681:1642..3665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score208.8
Seed ortholog evalue2.6e-51
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size657
Cds size657
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54681.12860.1prot_H-elongata_contig54681.12860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54681 1642..3665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.5670948-CDS-H-elongata_contig54681:1641..17041622930891.5670948-CDS-H-elongata_contig54681:1641..1704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 1642..1704 +
1691679613.8339863-CDS-H-elongata_contig54681:1641..17041691679613.8339863-CDS-H-elongata_contig54681:1641..1704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 1642..1704 +
1622930891.5862904-CDS-H-elongata_contig54681:2022..21131622930891.5862904-CDS-H-elongata_contig54681:2022..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2023..2113 +
1691679613.8462186-CDS-H-elongata_contig54681:2022..21131691679613.8462186-CDS-H-elongata_contig54681:2022..2113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2023..2113 +
1622930891.6022956-CDS-H-elongata_contig54681:2329..24691622930891.6022956-CDS-H-elongata_contig54681:2329..2469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2330..2469 +
1691679613.8561356-CDS-H-elongata_contig54681:2329..24691691679613.8561356-CDS-H-elongata_contig54681:2329..2469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2330..2469 +
1622930891.6147945-CDS-H-elongata_contig54681:2621..27121622930891.6147945-CDS-H-elongata_contig54681:2621..2712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2622..2712 +
1691679613.8656805-CDS-H-elongata_contig54681:2621..27121691679613.8656805-CDS-H-elongata_contig54681:2621..2712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2622..2712 +
1622930891.6262534-CDS-H-elongata_contig54681:2993..31661622930891.6262534-CDS-H-elongata_contig54681:2993..3166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2994..3166 +
1691679613.876211-CDS-H-elongata_contig54681:2993..31661691679613.876211-CDS-H-elongata_contig54681:2993..3166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 2994..3166 +
1622930891.638513-CDS-H-elongata_contig54681:3566..36651622930891.638513-CDS-H-elongata_contig54681:3566..3665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 3567..3665 +
1691679613.8866267-CDS-H-elongata_contig54681:3566..36651691679613.8866267-CDS-H-elongata_contig54681:3566..3665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54681 3567..3665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54681.12860.1

>prot_H-elongata_contig54681.12860.1 ID=prot_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp
MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLY
LGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGN
EGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGA
AIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING
ASPEVVGSVTEDVIPSESC
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mRNA from alignment at H-elongata_contig54681:1642..3665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54681.12860.1 ID=mRNA_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2024bp|location=Sequence derived from alignment at H-elongata_contig54681:1642..3665+ (Himanthalia elongata Himel1 dioecious)
ATGAACATTCGAAACTGTGGCGACGAATGCCTACGGATGCGGTACTTCAT CACATACTCTCAGGTGACTCGTTAGTGGCATATTCGCCATATACCACGCT AGAAGGAGAGGGAGCGGGGGGGGGGGCTGTTATCGAACGCGAGCACGTCT ACGTACAATCTTGAAATATGCGGTGAAATATTCGCTAAAAGGTTTCTCGA TTTTATTCCCCACGCATGATTCCACTCCGCCTAGCCATAAGCGACGCACT TACGCACGCGATAATCCAAATATAGAGCACATGATTCATTCAGAAGTCCA TTATTGTGGAGAAGCACACGGCAAAAGGGGATCCTTTCGCCTGTATAAGT GAACAATTTGTCGCATATTCCGCGATCAAAGGTGTACAACAACATCATCG AGAACTGCGGTGTCAACGACTTCGTGCTGCACCCTAATGACGGCGGCAAA AATGGCGAAGGCTTGTACCTAGGTACGAGTTGAAGCCCACTATACCCCCT TCGCACTCCCGAAACCCCGTCGGGGTTTTCTTTGCACCCAGTAAGTGGTG AAATGCATCGCGCCCCAAGGTCGCCACTCGAAGGAAATTGGACGGAAATT GGGAGCTAAAATGTTGCAACGACGATAGAAAGTACACTGGTCCATGTTTA TTTTTGTCGTGGTGTGTCCGTGCCCCCATCTCCGCCAGGAACGTCTTCCA ATCAGTGGGATGACGGGAATAATCCCACCTCGGAGCCTGATGAATCTCGG TTCAACCACATATTCAAAAATCACTTCGACACAGAGGCAAGAATCGCGCA AAGCTCGTCCGGTTTCTGGTTTTTAATAGTAAGGTTTTAGAGGGGTTATG TCATATCTGTGATTAGAATGACTAGTGTAACAGGGTCGGATTGCAAGGTT GCGTACAATATAATCAATAAGCGCACACGCACACACATATATACACGCAC TGATCGTTCCGTCCGGTTGCAACTAATCAGGGTAACGAAGGTGTCGATAT TAAGGAGGGCTCGAGCAACAACATTGTCGAGGACAACTACTGCACAGGGC AAAAAGACCCGAATTCCGCATGTGAGAATCGCTCGCGGTCAGCACACTTC CATATGCTATGCTTCAAGGCACTCAATTACCGTATCTCAACGCGCTAAAA GCATGCTAGATCCAATGTAGCAAGGTCGCAACTGCATGCTGTCATGTGGA TTGGTCTCGTAGTTAACAAGAGTATAACACGTACCCTTCCACCTACAGCA CGTACCTCTCCGCTGCAAGAAACTATTTCATCAACCGCATTACTGCAATA TAATCAGAGTCACCATAATAAATAACAACCTCAAATTACCTGCTATTGAT AGGCCTCGATTCCCGCGGCAGCAGCAACATATTCCGCTACAACACCGCCG AGAACAACATCGGTGCGGCAATCCGCTTTGGTGGCCACACGATCGATGGC TACACGTACGGCGTAGACAACGAAGCTTACGAAAACCTCATGATTAACAA CGACAAGGGTGGCGTAAGCCTCATGGTATGTGTGGCACACAAAGGAAATT TGGCCTTTACACTCCTCCGAACACGGCCATAGGCGATGTCTTTTTTGGTC CAAATATATGTATATAATATATAAACGTGTGGCCAAAGGGCCACGCGTTC GTTCGCCAACCATCATGGGTTGTGCCCTGTGAAGCCGGCGCATTGGGAGA TGGCCACACAACACGATGCAGCGCGGTGGGGCGTGTCGCGAGAGTTGGTG GCATCTTTCGTGTGAGATTCTCGTGAAACGTTACCGTCTGATTTACGCTG GGAGGAAACTCAATTGACGAGGGAACCCGGGCTTGCTCGGATATCGATGT TTTCTGAAGCGACGTACGCGATCATTCAAGGGTCTCGCCTATCGTACCGG AATTTCGAATCCATTTCACAAGCAGGTTGGTCCTCAAGGCGCCATCTGCC AGAATGACATCAACGGTGCGTCCCCGGAGGTGGTAGGCAGCGTTACAGAG GACGTTATACCCAGCGAGAGCTGT
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Coding sequence (CDS) from alignment at H-elongata_contig54681:1642..3665+

>mRNA_H-elongata_contig54681.12860.1 ID=mRNA_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig54681:1642..3665+ (Himanthalia elongata Himel1 dioecious)
ATGAACATTCGAAACTGTGGCGACGAATGCCTACGGATGCGGTACTTCAT
CACATACTCTCAGATGAACATTCGAAACTGTGGCGACGAATGCCTACGGA
TGCGGTACTTCATCACATACTCTCAGGTGTACAACAACATCATCGAGAAC
TGCGGTGTCAACGACTTCGTGCTGCACCCTAATGACGGCGGCAAAAATGG
CGAAGGCTTGTACCTAGGTGTACAACAACATCATCGAGAACTGCGGTGTC
AACGACTTCGTGCTGCACCCTAATGACGGCGGCAAAAATGGCGAAGGCTT
GTACCTAGGAACGTCTTCCAATCAGTGGGATGACGGGAATAATCCCACCT
CGGAGCCTGATGAATCTCGGTTCAACCACATATTCAAAAATCACTTCGAC
ACAGAGGCAAGAATCGCGCAAAGCTCGTCCGGTTTCTGGTTTTTAATAGA
ACGTCTTCCAATCAGTGGGATGACGGGAATAATCCCACCTCGGAGCCTGA
TGAATCTCGGTTCAACCACATATTCAAAAATCACTTCGACACAGAGGCAA
GAATCGCGCAAAGCTCGTCCGGTTTCTGGTTTTTAATAGGTAACGAAGGT
GTCGATATTAAGGAGGGCTCGAGCAACAACATTGTCGAGGACAACTACTG
CACAGGGCAAAAAGACCCGAATTCCGCATGGTAACGAAGGTGTCGATATT
AAGGAGGGCTCGAGCAACAACATTGTCGAGGACAACTACTGCACAGGGCA
AAAAGACCCGAATTCCGCATGCCTCGATTCCCGCGGCAGCAGCAACATAT
TCCGCTACAACACCGCCGAGAACAACATCGGTGCGGCAATCCGCTTTGGT
GGCCACACGATCGATGGCTACACGTACGGCGTAGACAACGAAGCTTACGA
AAACCTCATGATTAACAACGACAAGGGTGGCGTAAGCCTCATGGCCTCGA
TTCCCGCGGCAGCAGCAACATATTCCGCTACAACACCGCCGAGAACAACA
TCGGTGCGGCAATCCGCTTTGGTGGCCACACGATCGATGGCTACACGTAC
GGCGTAGACAACGAAGCTTACGAAAACCTCATGATTAACAACGACAAGGG
TGGCGTAAGCCTCATGGTTGGTCCTCAAGGCGCCATCTGCCAGAATGACA
TCAACGGTGCGTCCCCGGAGGTGGTAGGCAGCGTTACAGAGGACGTTATA
CCCAGCGAGAGCTGTGTTGGTCCTCAAGGCGCCATCTGCCAGAATGACAT
CAACGGTGCGTCCCCGGAGGTGGTAGGCAGCGTTACAGAGGACGTTATAC
CCAGCGAGAGCTGT
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