mRNA_H-elongata_contig54681.12860.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: D7G3L7_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI) HSP 1 Score: 281 bits (720), Expect = 2.500e-91 Identity = 141/221 (63.80%), Postives = 165/221 (74.66%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGG-KNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASPEVVGS-VTEDVIPSESC 657
M+I NCG EC+RMRYF+TYSQVYNN I NCG +DFV+ DGG KNGEG+YLGTSSNQWDDG NP+ EPDES +NH FKNHFDT+ GNEG+DIKEGS NIVEDNYCTGQKDPNSACLD+RG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NND G+ + + PQGA+C NDI G+ + GS E + P SC
Sbjct: 161 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVM---DGGSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ--------------GNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEGSC 364
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A6H5JFC7_9PHAE (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE) HSP 1 Score: 277 bits (709), Expect = 3.290e-85 Identity = 136/220 (61.82%), Postives = 163/220 (74.09%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASPEVVGS-VTEDVIPSESC 657
M+I NCG EC+RMRYF+TYSQVYNN I NCG +D+V+ N KNGEG+YLGTSSNQWDDG NP+ EPDES +NH FKNHFDT+ GNEG+DIKEG+ NIVEDNYCTGQKDPNSACLD+RG SNIFR+NT E+N+GA IR GGH IDG+ YG +NE YENL+ NN G+ + + PQGA+C NDI G+ + GS E + P +SC
Sbjct: 465 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDYVM--NGSSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQ--------------GNEGIDIKEGARYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNGYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLKPEDSC 668
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 204 bits (520), Expect = 2.630e-61 Identity = 107/220 (48.64%), Postives = 140/220 (63.64%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDIN-GASPEVVGSVTEDVIPSESC 657
M+++N G EC+R+RY++T +++++N NCGV DF N+GGKNGE +Y+GTSSNQWDDG NPT PD S N I N F T GNE VDIKEG+ N+VE N C+GQ+DPNSA DSRG NIFRYN + +N GA +R GG+T+DG YGV+N+ Y NL+ NN + GV LM PQ +C N + +++GS P SC
Sbjct: 164 MSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKF--NNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTN--------------GNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSDNTEGDIMGSSAMSYDPELSC 367
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1F7IR59_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12 TaxID=1802061 RepID=A0A1F7IR59_9BACT) HSP 1 Score: 191 bits (486), Expect = 4.100e-57 Identity = 106/220 (48.18%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASP-EVVGSVTEDVIPSESC 657
M I+N G EC+R+RY+ +++ N I +CG +D+ +DGGKNGEG+Y+GT+ Q DDG NPT++ DES N I N FDT+ GNE VDIKE S NIVE+N CTGQKDP S LDSRG NIFRYN N GA IR GG T+D + NE YEN+++NN KGG+ +M PQG +C N ++G VG ED P++ C
Sbjct: 91 MTIKNAGGECVRLRYYAQNNEIAYNTITSCGRHDYKF--DDGGKNGEGVYIGTAPEQRDDGKNPTNDNDESNGNWIHHNFFDTQ--------------GNECVDIKENSKYNIVENNECTGQKDPESGGLDSRGGYNIFRYNNIYGNSGAGIRLGGDTVD---ENIMNEVYENIIVNNKKGGIKIMTAPQGKMCDNIMSGNDGGNAVGEYGEDYDPTKGC 291
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1G2MDL9_9BACT (F5/8 type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT) HSP 1 Score: 194 bits (493), Expect = 1.510e-55 Identity = 99/220 (45.00%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
M ++N G ECLR+RYF T S++ N I NCG DF+ N GGKNGEG+Y+GTS+ QW DG NPT++PDE++ N + N+ DT+ GNE +DIKEG++ NI+E N C GQKD S DSRG NIFRYN ++G IR GG +++G YG +N+ YEN +++N GG+ PQG IC N ++G + + G + P +SC
Sbjct: 1 MTLKNSGGECLRLRYFATKSEIAYNTIANCGAYDFLF--NAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQ--------------GNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTMSGNTTGDSAGGFASEFDPIKSC 204
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI001998BEE9 (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Roseiflexaceae bacterium TaxID=2762507 RepID=UPI001998BEE9) HSP 1 Score: 189 bits (481), Expect = 1.730e-55 Identity = 105/220 (47.73%), Postives = 134/220 (60.91%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDIN-GASPEVVGSVTEDVIPSESC 657
M RN G ECLR+RYF+ S++ + NCGV DF GGKNGE +Y+GT+ Q DG NPT++PD+S N I N+F+T+ GNE VDIKE ++NNIVE+N CTGQKDPNSA DSRGS NIFRYNT+ N+GA +R GG T T G+DN+ Y N++ +ND GG+ PQ IC N IN + GS + P+ C
Sbjct: 146 MTFRNGGGECLRLRYFVQNSEIAQSTFLNCGVRDFRFKA--GGKNGEAIYIGTAPEQRGDGKNPTTDPDQSNNNWIHHNNFNTQ--------------GNECVDIKEAATNNIVENNTCTGQKDPNSAGFDSRGSGNIFRYNTSYGNVGAGVRLGGDTA---TDGIDNQVYANILHHNDAGGIKFQRAPQRTICGNTINDNRGGDATGSYPDRYNPTAPC 346
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: UPI0019FF4931 (DUF1565 domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931) HSP 1 Score: 185 bits (469), Expect = 2.130e-52 Identity = 102/224 (45.54%), Postives = 130/224 (58.04%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPND----GGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDI-NGASPEVVGSVTEDVIPSESC 657
M +N G ECLR+RYF +++ + NCG +D+ P GGKNGE +Y+GTS+NQW DG NPT+EPD+S N + N +T+ GNE VDIKEG++ NIVE N CTGQKD NSA LDSRG N FRYN N+G +R GG +DG YG +N Y+N++ +N GGV MV PQG IC N + N + G P SC
Sbjct: 159 MTFKNAGGECLRLRYFAQNNEIAYSTFLNCGQDDY---PGGEWAGGGKNGEAIYIGTSNNQWGDGKNPTNEPDQSNNNWVHNNFMNTQ--------------GNECVDIKEGATGNIVEYNECTGQKDENSAGLDSRGDGNTFRYNETYGNVGGGVRLGGALVDGEQYGKNNNVYDNIIYDNIAGGVKFMVTPQGKICGNTMWNNTGGDSFGDFANQFDPKASC 365
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A1F7IHP9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_35_13 TaxID=1802055 RepID=A0A1F7IHP9_9BACT) HSP 1 Score: 182 bits (462), Expect = 2.320e-52 Identity = 107/220 (48.64%), Postives = 132/220 (60.00%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
MNI+N G EC+R+RYF +++ N I CG+ DF GGKNGEG+Y+GT+ Q DG NPTS+ DES N I N +T+ GNE VDIKEGSS NIVE N CTGQKD SA LDSRGS NIFRYN N+GA +R GG D G++N+ YEN + NN GG+ PQG IC N + G + VGS E+ P++SC
Sbjct: 191 MNIKNAGGECVRLRYFAQNNEIAYNSINRCGIVDFEFKG--GGKNGEGIYIGTAPEQLKDGKNPTSDIDESNNNLIHHNTINTQ--------------GNECVDIKEGSSGNIVEYNNCTGQKDKESAGLDSRGSKNIFRYNEVYGNLGAGVRLGG---DEDNDGINNDVYENTIKNNVSGGIKFQRAPQGKICGNKMEGNKGGDSVGSEAEEFNPTKSC 391
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A0G1AW46_9BACT (Secreted protein n=3 Tax=Candidatus Daviesbacteria TaxID=1752718 RepID=A0A0G1AW46_9BACT) HSP 1 Score: 183 bits (465), Expect = 2.440e-52 Identity = 107/220 (48.64%), Postives = 130/220 (59.09%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDING-ASPEVVGSVTEDVIPSESC 657
M ++N G EC+R RYF T ++V +N + NCGV DF N GGKNGEG+Y+GT+ Q DG NPTS+ D+S N I N F+T+ GNE VDIKE SS NI+E+N CTGQKDPNSA LD+RGS NIFR N N GA IR GG D + G N Y N + NN GG+ PQG IC N +G +S VGS D P+ C
Sbjct: 171 MTLKNAGGECMRFRYFATKNEVASNTVTNCGVYDFKF--NAGGKNGEGVYIGTAPEQLTDGKNPTSDRDQSNDNWIHNNTFNTQ--------------GNECVDIKEASSGNIIENNKCTGQKDPNSAGLDTRGSKNIFRSNETYGNTGAGIRLGG---DATSDGTGNHIYNNKISNNTAGGIKFQRSPQGEICGNSFSGNSSGNSVGSYGSDYNPTSVC 371
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 181 bits (459), Expect = 4.520e-52 Identity = 97/221 (43.89%), Postives = 132/221 (59.73%), Query Frame = 1
Query: 1 MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDG-GKNGEGLYLGTSSNQWDDGNNPTSEPDESRFNHIFKNHFDTEARIAQSSSGFWFLIGNEGVDIKEGSSNNIVEDNYCTGQKDPNSACLDSRGSSNIFRYNTAENNIGAAIRFGGHTIDGYTYGVDNEAYENLMINNDKGGVSLMVGPQGAICQNDINGASP-EVVGSVTEDVIPSESC 657
M IRN G EC+R+RY +T ++++ N NCG DF DG GKNGE +Y+GTSS QWDDG NP+++PD S +N + N+F T GNE VDIKEG+++N+VE+N C GQ+DP S D+RG NI RYN + +N GA IR GG+ ++G YGV NE Y N + +ND G+ +M PQ +C N + S + G P+ C
Sbjct: 170 MRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQF---DGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTR--------------GNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTDNSKGNITGESATFYDPATGC 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54681.12860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54681.12860.1 >prot_H-elongata_contig54681.12860.1 ID=prot_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp MNIRNCGDECLRMRYFITYSQVYNNIIENCGVNDFVLHPNDGGKNGEGLYback to top mRNA from alignment at H-elongata_contig54681:1642..3665+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54681.12860.1 ID=mRNA_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2024bp|location=Sequence derived from alignment at H-elongata_contig54681:1642..3665+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54681:1642..3665+ >mRNA_H-elongata_contig54681.12860.1 ID=mRNA_H-elongata_contig54681.12860.1|Name=mRNA_H-elongata_contig54681.12860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig54681:1642..3665+ (Himanthalia elongata Himel1 dioecious)back to top |