mRNA_H-elongata_contig5468.12859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5468.12859.1
Unique NamemRNA_H-elongata_contig5468.12859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 548 bits (1412), Expect = 9.050e-189
Identity = 254/386 (65.80%), Postives = 297/386 (76.94%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEE-----VFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            RE+K  +K LG+QRV +SQIV STG T      VMVKYVRREIR LTD DR+AFF A+ETLYRLPT +G  +YG  YKGI FFVQMHL+GAG+ DCDHWHDDAGIMTHHVGYTLLFEQALQVV+ AVT+PYWEYTIE  ++ G   Y  S+VF  DWFG+ASP N LHTVDKGR+AFLP+M+DA  YVHN YGLLR+PWN D TP+VTRHNVTNN D+  +VSC+DY  CF  D+LA +NNCLNGGTHGPVHI VGGEWNDP+E     + T    Y N +PL++KYLWRKGYLR+P  CS E +G GD+STCR+SCP ELYES+GMKPYDVL+DV AL+WI+    GI+        F VAGHE D +F +  W K+L S CDPG
Sbjct:  163 REVKHNFKTLGRQRVSLSQIVVSTGNTHETVGSVMVKYVRREIRSLTDKDREAFFDAMETLYRLPTVEGRELYGEEYKGINFFVQMHLNGAGVSDCDHWHDDAGIMTHHVGYTLLFEQALQVVDPAVTIPYWEYTIE--AAAGLEDYDSSEVFASDWFGEASPDNELHTVDKGRWAFLPVMEDAWHYVHNPYGLLRSPWNTDPTPYVTRHNVTNNKDVQGVVSCDDYQSCFDKDNLADMNNCLNGGTHGPVHIKVGGEWNDPQEGIIQALGTLFGRYTNKVPLMSKYLWRKGYLRMPTSCSVESEGTGDASTCRSSCPAELYESKGMKPYDVLMDVYALHWIAESAGGIVVWDNNTEHFTVAGHEHDAEFMEGLWTKVLTSLCDPG 546
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 543 bits (1399), Expect = 3.620e-187
Identity = 247/381 (64.83%), Postives = 300/381 (78.74%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            R +++T+  +G   V + QI  STG    + ++VMVKYVRREIRQL D+DR+AFF A+ETLYRLPTS+GN +YG+ YKGI FFVQMHLDGAG+KDCDHWHDDAGIMTHHVGYTL FEQALQVV+ +V++PYWEYTIE  S+ G + YGES +F  DWFG+ASP N LHTVDKGR+A+LP    AT+YVHN YGLLR+PWN+D TPFVTR N+TN  D T MVSCE Y  CF + +LA++NNCLNGGTHGPVHI VGGEWNDPEE       Y + IPL+TK+LWRKGYLR PE C+ E+DGVGDSSTCRA CP E+YE+ GM PYDVL+D+ +L+WI+  + GII +    +RFVVAGHE+D  FQ   W+ +L+S CDPG
Sbjct:  148 RTVEYTFTSVGLHDVALRQIDVSTGNVYRMSSHVMVKYVRREIRQLKDEDREAFFDAMETLYRLPTSEGNAVYGDEYKGINFFVQMHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQALQVVDPSVSIPYWEYTIE--SAQGLTEYGESTIFAADWFGEASPDNSLHTVDKGRWAYLP---GATDYVHNPYGLLRSPWNVDGTPFVTRFNLTNGEDKTSMVSCETYQSCFDATTLATMNNCLNGGTHGPVHIKVGGEWNDPEEDMATKLGYTSAIPLLTKFLWRKGYLRTPESCTAEEDGVGDSSTCRAGCPAEVYENLGMTPYDVLMDIFSLHWIARLSGGIIVYDEAHDRFVVAGHEEDEAFQSVIWKTVLHSLCDPG 523
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 3.310e-181
Identity = 237/381 (62.20%), Postives = 290/381 (76.12%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            R +K  +K +G+  V + QIV STG   H+ + VMVKYVRREIRQLTD DR+AFF A+ETLYRLPT +G  +YG  YKGIEFFVQMHLDGA +K+CDHWHDDAGI+THHVG+TLLFEQALQVV+ +V++PYWEYTIE  ++LG + YGES+VF P WFGDASP N LHTV  GR+AFL IM++A +YVHN YGLLR PWN D TPFVTR++  N VD TDMV+CE++  CF S S+A++NNCLN G HGPVH  +GGEWN+PEE FT    Y   + ++ K LWR+GYLR+P  C   KDG G++STC  SCP ELYES GM PYDVLVD  A YW++      + +   E+RFVV GHEDD DFQ+ FW ++L+S CDPG
Sbjct:    3 RRVKHKFKAVGRHEVSLMQIVVSTGEVYHMSSSVMVKYVRREIRQLTDKDREAFFDAMETLYRLPTGEGVALYGEDYKGIEFFVQMHLDGAAVKECDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIE--AALGLANYGESQVFHPGWFGDASPDNSLHTVTDGRWAFLSIMKEAWDYVHNPYGLLRAPWNTDGTPFVTRYDKINGVDSTDMVTCEEFQSCFESSSIAAMNNCLNAGIHGPVHNTMGGEWNNPEEEFTFRLGYSASVAILAKALWRQGYLRVPNTCLQGKDGPGNASTCITSCPAELYESLGMTPYDVLVDTSAAYWVAEAAGDAVMYDHDEDRFVVTGHEDDEDFQNEFWMRVLHSLCDPG 381
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 528 bits (1360), Expect = 3.510e-181
Identity = 232/381 (60.89%), Postives = 296/381 (77.69%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            RE+ + +K +G Q V ++Q + STGR + ++  VMVKYVRRE+RQL  +DR+AF  A+E LYRLPT +G  +YG+ YKGI FFVQMHLDGAG+ DCDHWHDDAGIMTHHVGYT+LFEQALQVV+ +VT+PYWEYTIE   S G + YGES++F PDWFGDASP N +HTVD GR+A+LP+MQDA +YVHN YGLLRTPWN D TP+VTRHN+TN  D+T +V+C  Y  CF   +LA L NCLNGGTHGPVHI +GGEWN+PEE  T    Y + +PL+ K+LWRKGYLR+P  C+ ++ G GD STCRASCP E+YE+ GM PYDVL D L+++W++  + G++     + +F +AGHEDD++F+  FW ++LNS CDPG
Sbjct:  150 REVTYMFKGVGAQTVSLAQTMVSTGRIVQIEDSVMVKYVRREVRQLKAEDREAFLDAMEKLYRLPTEEGVALYGDDYKGISFFVQMHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPSVTIPYWEYTIE--YSQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGRWAYLPVMQDAWDYVHNPYGLLRTPWNTDPTPYVTRHNMTNAQDITGVVTCGMYQNCFDETTLAGLFNCLNGGTHGPVHIKMGGEWNNPEEELTNSLGYADEVPLMAKFLWRKGYLRMPTSCTEDEHGTGDDSTCRASCPSEIYENLGMTPYDVLYDALSIHWVAGKSGGVVVWDEEKEKFYIAGHEDDVEFEKFFWLRILNSLCDPG 528
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A6H5KFJ6_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 504 bits (1299), Expect = 3.100e-174
Identity = 233/415 (56.14%), Postives = 293/415 (70.60%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIE-GKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQ---------------------------------DATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            RE+ + +K +G Q V ++Q + STGR + ++  VMVKYVRRE+RQL  +DR+AF  A+ETLYRLPT +G  +YG+ YK       MHLDGAG+ DCDHWHDDAGIMTHHVGYT+LFEQALQVV+ AVT+PYWEYTIE G  S G + YGES++FDPDWFGDASP N +HTVD GR+A+LP+MQ                                 DA +YVHN YGLLRTPWN D TP+VTRHN+TN  D+T +V+C  Y  CF   +LA L NCLNGGTHGPVHI +GGEWN+PEE  T    Y + +PL+ K+LWRKGYLR+P  C+ E+ G GD STCRASCP E+YE+ GM PYDVL D L+++W++  + G++     + +F VAGHEDDL+F+  FW ++LNS CDPG
Sbjct:   67 REVTYIFKGVGAQTVFLAQTIVSTGRIVQIEDTVMVKYVRREVRQLRAEDREAFLDAMETLYRLPTEEGVALYGDDYK-------MHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPAVTIPYWEYTIECGCHSQGLTDYGESQIFDPDWFGDASPNNAMHTVDNGRWAYLPVMQASPAIAVLHCTLTGLIIYIHPTVDTIYRVAQDGDAWDYVHNPYGLLRTPWNTDPTPYVTRHNMTNAQDITSVVTCGMYQNCFDETTLAGLFNCLNGGTHGPVHIKMGGEWNNPEEELTNSLGYADEVPLMAKFLWRKGYLRIPTSCTVEEHGTGDDSTCRASCPSEIYENLGMTPYDVLYDALSIHWVAGKSGGVVVWDEEKEKFYVAGHEDDLEFEKFFWLRILNSLCDPG 474
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 1.350e-163
Identity = 226/381 (59.32%), Postives = 282/381 (74.02%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            REI++ +   G++ ++++Q V STG    L TY+MVKYVRREIR L + DR AFF  +ETLYRLPTSQG   +G  YKGI++FVQMHLDGAG+KDCDHWHDDAGIMTHHVGYTL FEQA+Q+VN +V++PYWEYTIE    L    YGES VF+ DWFG+ SP N LHTV KGR+AFLPI  DA + VHN YGLLR+PWNL+ TPFVTRHN T+++  T MVSC  Y+ CF S +LA +N+CLNG THGPVHIL GGEW+  EE F +   Y   +PL+TK+LWRKGYL +P+ C          + C+ SCP +LYES+GM PYDVL+DV AL W +  T   + + + +++F V GHEDD  FQ AF++KMLNSFC+PG
Sbjct:  149 REIEYIFTDPGRKDIVLTQTVTSTGERYSLHTYIMVKYVRREIRALNNADRVAFFDTLETLYRLPTSQGVEEFGTDYKGIDYFVQMHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQAMQLVNPSVSIPYWEYTIEATEGLPS--YGESTVFNDDWFGEFSPRNELHTVTKGRWAFLPIQPDAWDSVHNPYGLLRSPWNLNPTPFVTRHNATSSMSATAMVSCSVYLSCFDSTTLADMNSCLNGETHGPVHILAGGEWHAAEEDFIQKVGYYESVPLVTKFLWRKGYLSIPDTCD-------QGTPCQTSCPAKLYESKGMTPYDVLLDVHALMW-TAHTSASLVYNSKKDKFEVKGHEDDESFQQAFFKKMLNSFCNPG 519
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 477 bits (1227), Expect = 2.850e-161
Identity = 222/381 (58.27%), Postives = 288/381 (75.59%), Query Frame = 1 
Query:   31 REIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            REI++T+   G++ ++++Q V STG    L T++MVKYVRREIR L + DR AFF A+ETLYRLPTS+G   +G+ YKGI++FVQ+HLDGAG+KDCDHWHDDAGIMTHHVG+TL FEQA+Q+V+ +VT+PYWEY+IE    L    YG+S VFD DWFG+ SP N  HT+ KGR+AFL + +DA + VHN YGLLR+PWN+D TPFVTRHN T+++  TDMVSC  Y  CF+S SL+ +N CLNG THGPVHIL GGEW+  EE F +   Y   +PL+TK+LWRKGYL +P++C      VG+S  C+ SCP ELYES+GM PYDVL+DV AL W S     ++ + + +++F V G+EDD  FQ A+++KMLNSFC+PG
Sbjct:  149 REIEYTFTEPGRKDIVLTQTVTSTGERHTLHTHIMVKYVRREIRTLHNSDRVAFFDALETLYRLPTSEGVQQFGSDYKGIDYFVQLHLDGAGVKDCDHWHDDAGIMTHHVGFTLQFEQAMQLVDPSVTIPYWEYSIEATDDLDS--YGDSIVFDHDWFGEFSPNNDFHTMTKGRWAFLRVQRDAWDSVHNPYGLLRSPWNVDDTPFVTRHNTTSSMTATDMVSCSVYSSCFASSSLSIMNACLNGETHGPVHILTGGEWHAAEEDFIQKVGYYESVPLVTKFLWRKGYLSIPDKCE-----VGES--CQTSCPSELYESKGMTPYDVLMDVHALMWTSHTASSLV-YSSRKDKFEVKGYEDDEPFQRAYFKKMLNSFCNPG 519
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A7S3Y3R6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3R6_HETAK)

HSP 1 Score: 291 bits (746), Expect = 9.810e-91
Identity = 152/384 (39.58%), Postives = 228/384 (59.38%), Query Frame = 1 
Query:   37 IKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEY-VHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLT-DMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNV---IPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            I  T+   G + V ++   +S+G     ++ V+VKYVRREIR LTD+DR     A+ET++R+    G  +YG  Y+ I+ F + HL+GAG  +CD WHDDAGI+THH+G+TL FE+ +Q+++  V++PYWEYT++     GY+ + ES +F  +WF         H VD+GRFA+L + + +  + V N YGLLRTPW  D TP++TR    N   +    V C D+V  F++  LA+LN  +NG THGPVHI +GGEWN  EE+   M +YG+    + LI K LWR G+ R P  C+       +  TC+ + P+E+ E  G+  Y+ L+    L ++ T  DG   + A   R+ + G E   + ++ F+ KML +  +PG
Sbjct:  145 IDVTFTSTGPKTVKLTIADSSSGTVGTYESEVVVKYVRREIRSLTDEDRKRTLDAIETIFRVDQETGEHLYGENYRSIQSFSEEHLNGAGRVECDSWHDDAGIVTHHLGFTLEFEEIMQMIDPVVSLPYWEYTVD-TDLYGYNIW-ESPIFSEEWFSPFPSNTQNHIVDQGRFAYLEVPKVSDGFDVFNPYGLLRTPWVTDPTPYLTRGKFVNGATMAISGVECSDFVTAFNASDLATLNMEMNGFTHGPVHIQIGGEWNLEEEMLDFMDDYGDFRADLALIFKVLWRTGFARCPTTCT-------EGETCQCTAPLEVLEQAGLTAYEALMQADVLKYLDT--DGTNLYQADSGRYHIRGKEGSPE-EEQFFLKMLQALSNPG 516
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A7S2SIM0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIM0_9STRA)

HSP 1 Score: 292 bits (747), Expect = 8.920e-90
Identity = 156/393 (39.69%), Postives = 227/393 (57.76%), Query Frame = 1 
Query:   61 GKQRVIISQIVASTGRTIHLKTYV-MVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYS-----WYG----ESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEY--VHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWN---------DPEEVFTEMTNYGNVIPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVL-ALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            GK  V+++ +  S+   +  +++V MVKYVRRE+R LT++DR+ F  A+  +Y   T  G+++YG+ YKGIE+FV+ HL GA  K+CDHWHD +GIMTHH+ +TL  EQ+LQ V+  V + YW+Y+ +  +    S     W      +S +F  DWFG ASP  P + + +GR+A   +MQDA  Y  + N YGLLR+PWN + TP  TRH+         MV C+ +  CF   +LA LNNCLNGGTHGP+HIL+GG+W          DP+  F  ++  G  + L+ K+LWR G+LR PE CS +      S +CR SCP  L E  G+  Y++L +    +  ++  T G I       R+ +A      + +   W  +  + CDPG
Sbjct:  161 GKHSVVVTALAGSS--VVASESFVVMVKYVRREVRSLTEEDRNRFLEALHVVYTTATEDGSVLYGSRYKGIEYFVRKHLYGAASKECDHWHDGSGIMTHHMAFTLELEQSLQAVDPTVAMVYWDYSTDDAAYCAGSEAPNCWEDSVVHQSPLFSDDWFGAASPATPDYGLVQGRWADALVMQDAAAYSKLTNPYGLLRSPWNTNPTPKFTRHSRVLGGRYEPMVGCKTWSSCFQESTLAGLNNCLNGGTHGPIHILLGGQWGTPMNHSLLTDPDSPFQSVS--GPHL-LLAKHLWRFGFLRCPESCSADSG----SDSCRCSCPASLRE--GLTAYEILAEKTPVMKTLAAVTQGAITFDDDSQRYRLASASSP-EVEHRVWEDLFAALCDPG 541
[Close]
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Match: A0A6V1TYR0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYR0_HETAK)

HSP 1 Score: 293 bits (749), Expect = 1.180e-89
Identity = 149/384 (38.80%), Postives = 223/384 (58.07%), Query Frame = 1 
Query:   37 IKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVRREIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDGAGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKSSLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFL--PIMQDATEYVHNAYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLNNCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNV---IPLITKYLWRKGYLRLPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTFTDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG 1173
            I  T+  +G + V ++   +S+G   + ++ V+VKYVRREIR LTD+DR     A+ET+YR+    G  +YG  Y+ I  F + HL+GAG   CD WHDDAGI+THH+G+T+ FE+ +Q+++  +++PYWEYTI+        W  ES +F  +WF      +  H V++GRFA+L  P + D +  V N YGLLRTPW  D  P++TR    N   L   VSC  +   F+   +A++NN LNGG HGPVHI +GGEWN  +E+ + M  YG     + L+ K LWR G+ R P  C+       +  TC    PVE+ E  G+  Y+ +  +  L ++ST  DG   + + +  + + G ED  + ++A W K+L +  +PG
Sbjct:  139 IDLTFTTVGLKSVKLTIADSSSGSVGNYESEVVVKYVRREIRSLTDEDRKRTLDAIETIYRVDQQTGEELYGENYRSIVSFSKEHLNGAGRLGCDSWHDDAGIVTHHLGFTIEFEEVMQLIDPMISLPYWEYTIDTDLYGDNIW--ESPIFQDEWFSPLDTVDENHVVNQGRFAYLEIPKITDGSFDVLNPYGLLRTPWVTDPNPYLTRGKEINKGALFGSVSCNMFKSTFNQGDIATINNRLNGGAHGPVHIQIGGEWNVNDEMLSFMDAYGGFEYKLVLVFKILWRTGFARCPTTCA-------EGETCECYAPVEVLEEAGLTAYEAMKQIDVLKYLST--DGDYVYTSDDGEYHIYGLEDSPEEEEAVWLKILQALANPG 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5468.12859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSP4_ECTSI9.050e-18965.80PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5L3M0_9PHAE3.620e-18764.83PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0K0_ECTSI3.310e-18162.20Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G0J9_ECTSI3.510e-18160.89PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFJ6_9PHAE3.100e-17456.14TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G0J8_ECTSI1.350e-16359.32Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE2.850e-16158.27TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S3Y3R6_HETAK9.810e-9139.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2SIM0_9STRA8.920e-9039.69Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6V1TYR0_HETAK1.180e-8938.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5468contigH-elongata_contig5468:125..10569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score549.3
Seed ortholog evalue1.5e-153
Seed eggNOG ortholog2880.D7FSP4
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons10
Model size1176
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5468.12859.1prot_H-elongata_contig5468.12859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5468 125..10569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.3480482-CDS-H-elongata_contig5468:124..2651622930891.3480482-CDS-H-elongata_contig5468:124..265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 125..265 +
1691679613.7160194-CDS-H-elongata_contig5468:124..2651691679613.7160194-CDS-H-elongata_contig5468:124..265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 125..265 +
1622930891.3650925-CDS-H-elongata_contig5468:1123..12461622930891.3650925-CDS-H-elongata_contig5468:1123..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 1124..1246 +
1691679613.729321-CDS-H-elongata_contig5468:1123..12461691679613.729321-CDS-H-elongata_contig5468:1123..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 1124..1246 +
1622930891.384435-CDS-H-elongata_contig5468:2374..24501622930891.384435-CDS-H-elongata_contig5468:2374..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 2375..2450 +
1691679613.7381144-CDS-H-elongata_contig5468:2374..24501691679613.7381144-CDS-H-elongata_contig5468:2374..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 2375..2450 +
1622930891.4033146-CDS-H-elongata_contig5468:3709..38191622930891.4033146-CDS-H-elongata_contig5468:3709..3819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 3710..3819 +
1691679613.7493172-CDS-H-elongata_contig5468:3709..38191691679613.7493172-CDS-H-elongata_contig5468:3709..3819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 3710..3819 +
1622930891.424578-CDS-H-elongata_contig5468:4570..46961622930891.424578-CDS-H-elongata_contig5468:4570..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 4571..4696 +
1691679613.7586584-CDS-H-elongata_contig5468:4570..46961691679613.7586584-CDS-H-elongata_contig5468:4570..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 4571..4696 +
1622930891.4419928-CDS-H-elongata_contig5468:5504..56061622930891.4419928-CDS-H-elongata_contig5468:5504..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 5505..5606 +
1691679613.7703145-CDS-H-elongata_contig5468:5504..56061691679613.7703145-CDS-H-elongata_contig5468:5504..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 5505..5606 +
1622930891.4657514-CDS-H-elongata_contig5468:6102..62041622930891.4657514-CDS-H-elongata_contig5468:6102..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 6103..6204 +
1691679613.781224-CDS-H-elongata_contig5468:6102..62041691679613.781224-CDS-H-elongata_contig5468:6102..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 6103..6204 +
1622930891.4848175-CDS-H-elongata_contig5468:6933..69941622930891.4848175-CDS-H-elongata_contig5468:6933..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 6934..6994 +
1691679613.7936246-CDS-H-elongata_contig5468:6933..69941691679613.7936246-CDS-H-elongata_contig5468:6933..6994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 6934..6994 +
1622930891.5018165-CDS-H-elongata_contig5468:9512..97361622930891.5018165-CDS-H-elongata_contig5468:9512..9736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 9513..9736 +
1691679613.8118815-CDS-H-elongata_contig5468:9512..97361691679613.8118815-CDS-H-elongata_contig5468:9512..9736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 9513..9736 +
1622930891.5209386-CDS-H-elongata_contig5468:10458..105691622930891.5209386-CDS-H-elongata_contig5468:10458..10569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 10459..10569 +
1691679613.823097-CDS-H-elongata_contig5468:10458..105691691679613.823097-CDS-H-elongata_contig5468:10458..10569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5468 10459..10569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5468.12859.1

>prot_H-elongata_contig5468.12859.1 ID=prot_H-elongata_contig5468.12859.1|Name=mRNA_H-elongata_contig5468.12859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=392bp
MAAVPFGTNDREIKFTYKHLGKQRVIISQIVASTGRTIHLKTYVMVKYVR
REIRQLTDDDRDAFFHAVETLYRLPTSQGNLIYGNIYKGIEFFVQMHLDG
AGIKDCDHWHDDAGIMTHHVGYTLLFEQALQVVNSAVTVPYWEYTIEGKS
SLGYSWYGESKVFDPDWFGDASPGNPLHTVDKGRFAFLPIMQDATEYVHN
AYGLLRTPWNLDSTPFVTRHNVTNNVDLTDMVSCEDYVGCFSSDSLASLN
NCLNGGTHGPVHILVGGEWNDPEEVFTEMTNYGNVIPLITKYLWRKGYLR
LPEECSPEKDGVGDSSTCRASCPVELYESRGMKPYDVLVDVLALYWISTF
TDGIIKHIAGENRFVVAGHEDDLDFQDAFWRKMLNSFCDPG*
back to top

mRNA from alignment at H-elongata_contig5468:125..10569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5468.12859.1 ID=mRNA_H-elongata_contig5468.12859.1|Name=mRNA_H-elongata_contig5468.12859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=10445bp|location=Sequence derived from alignment at H-elongata_contig5468:125..10569+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTGTACCATTCGGAACAAATGACAGGGAGATAAAGTTTACGTA
CAAGCACTTGGGCAAGCAGCGAGTCATCATATCCCAGATTGTTGCATCGA
CGGGGAGGACGATTCATCTGAAAACCTACGTCATGGTTAAGGTATGATGT
CTGCCTTACCGCTGCCCCCTTCCCATCTCACACTACAGTTTATCGATATT
ATTTTTTGTAGATGTCACCCGTGCGAGTACCGTGAGGTTCAGCGCCCTCC
TTCGCCTCCCCAACGAAATAAATGTTTGCAATGCGAGACGCGCCGACGTC
ACAATCTCCAGCTAAATAATTGCCTAGATGAGGCCTTATCACGTACCGTA
TTGGCTGCTATTTAACCCTGACTCCAAGCAATACAGTATTATATCTAGTG
TTGAAAAATATCGCGGAAATATACTGTCCCCCCCCGAAAAGTTAGTAGCG
CTTCTATATTCCATCGATGCTGTCGTCACGAGTTTGTCTTCCAGAACTAT
GATGTACACCCTGTATTATGTCCCCTATTAGCCACGTTATACGCAATTAG
TTGTTTACTTGTGGTTAGGGAGCGGATAGAGACTCTAGACACGGGTGACG
ACCAGTTACATATTGTTACCTTCTCTAAATCTGCTGCGAAATCTATGCAA
ATATCTTGATTTATCGTAGTCCTTCGATTCCATTTCGTTCATGGTGCGGC
TTGCGCCTTCGCTTCGCCCCTGACCTTCTTTATCTCCCTTACAGTACAAC
TCTTTCATCGATTACCAGGTGCACTCTCCCCTCTTGTATGGTCTTCTAAG
GCCATGCTCTTCTATATAATGTGCTTCTAAGGCCATGCTCTTCTAAATAA
TGTGCTTCCATGTTATGTTTTATTGATTGCTTTTTAGCTCCAACTCTTCG
ACATACTTCGATATGTTTTGCTTACGTTGGTTTTTGGTTTTTATTTGTTG
TTTCGATTGTTTTGTTGCTTTTTGTTTGTGCAACTCCGCTCGTGCACAGT
ACGTGCGGCGGGAGATACGACAGCTGACCGACGACGATCGCGATGCGTTT
TTCCATGCTGTGGAGACACTCTACCGTTTACCAACCTCTCAGGGAAATCT
GATCTACGGAAATATTTACAAGGTACAAATAGGAGACGAAGGGGCAGAAC
CGTATGGCGCAACGCGCTGCACGCAATAAAAATTAAGTCAGAGAGAGACA
ATCGAGTTAAATGTGAAGTAGTTCAGAATAAGTGCAACTCTACATCATAG
AAGCACTTTAACTGCTAAGGTCTAGTCGAACAAACAGAATCGCATGAAGG
CCATATCCTCCAACTTAGGAAGGGAGGGTTATTGGTATTCACCCCGGGTC
AGGGAAACGCTAGATATAATGGAACATAAGGCACTTAAAAAGAGCACGTG
CAAAAAACGCATAATAACCCCAACAGCGTGTGCGTACGAGTGGGTAAACA
CCGTGACGACAGAGGCTGACGATAAAGGCTGTCAGGGTACCCCTTTACCC
AAGACTCCTACCAATCGCACCCGTGTAAAGATCGCCCGCCTCTAGCTTCC
CGGGATCCCGTCTCAAACGTACGAACCTTCGCTGGGCATGCATCGCCCCA
CGAGACCGGTAAAGCATCGTGAATACGGTTAGTTGCGTTATCGCCGAAGA
TACAAGCCCTTCTTTTGCTTTACATTCTAGGGCGGTGTTTCTGCCATCTT
CGCCACCCAAATTGTATACCGCGATCTGGTCGATGGGCTCGTTGCTAATC
TTACCGATGCGCCCAAATGATTTCGGCTGGCAATATATAAAGGTGAATAA
TATGCTGATCGATAGAGATAAGTCCCAAATAAATTTAGTGCGCACTCTCT
TACGTCTCAGCCATCGCGAGAGAACCGCCAAGAATGGCGACCCCGATCTT
AATCTGCGATGAATTATGGATATCGAAGGAGGTACCTTTAAAAAAAAAGC
CCTTTCGGGTGTTAGATTATGAACATTTGGGGGGCCTCGTCAGCCGGCAC
AGCAAAGACCATAAGCACAAGTTCTTGTTCCCTAAGAATATATCCCCATC
GTCTCTAGCAATGCGCGCAGCCGGCAGGTGCCCTGAGCCCTCTACAGAAC
ATAAACGATCTACCAGTTGGTGCCGACTTAGAGCGAGTTTGACGGAGGAT
GCGTCACATTACACGAATCCATTTTCGCTCGATTGATTTCCTACCCGTTC
ACCTCTCTCCCGGCATGCCATTTTATGTCAACGGAATATTCTACGCCTAG
GGCATCGAGTTCTTCGTGCAGATGCACTTAGACGGGGCCGGCATCAAGGA
CTGCGACCACTGGCACGACGACGCCGGTGAGCTGTTCCAAGACAAATTCA
TTTTTCAAAGGCGAAGATATTAAATCTAAAAACTGGAATCTGCGACTATC
CCTTCTTCAGGCGTCACGCTGGATATCCGCTCTACGATTTTAATAATTCA
CTTAATCGGGTACCACATTGGTACCTCCTCTGCATATTCACTGAACCTTG
TCGCTATAAAAACATTTAATTTCGATTAATCTAATTTTCTGGCAAGCACG
CGTGCTCTCCTACTATTTCGTTGTGGGAGTGTTTTATTTTTTAATGATGA
CCAATCGGGAGGTTTTCGGTATCTGAGCGCAGTATTTTTAGCCATAAATT
GATATGAACTACGAAGAAAGTGGATATAAACTTTCTGGATGATAGACGAG
GATTAGCGGTGCGAAGTACCGAGTCGGTTCAAACGGGTGCCGGGTGTTAG
CAAAACTAAATGAGAAACAATAACTGAAATAATGCTTGCGGTCTACATAT
ATGTGCGCCCCCCTCTCCTCGTTTGCGTGTTGATGTCATTCGCCTTTTAG
GAATACCTCCGCAAGAATTCTCGCTTATTTATATATACCCTTCAAAGTAT
ATAGTTTATATCTTAGCTTCAGTTTTATTATTGAACTGTAGGGGGAGGGT
ATCATGAACCTAGCCCTGAGTCAAAGGGTAAAGTGCAAAAGCAGCCTCTG
TCGCGGGCGGAAATATTTTTATGAGGAGACCAATAGGTTTACTTTTCTAT
CGTACATGGTACGAGAATGGGTAGCACCATTCTTTGAGAGAGCTGGATAT
TATCCTAGTCCTAAGCTCAAACCCAGTTTCATCAAACACCCCTTCTCATA
TCGACGCAGATCAAAATCCGACGTATTCACGCCATCGATCGAGTTGGGAT
ATATCGCTGATACTCATTGATGAATCAAACTAAACAAAGCATCGGTTTGA
GCAATACAACCGGTGCTTATTACATTTTAGATTGTTTTATCTCGTTCGGA
TTTCGCAAGCGGATTGAACCTCATAGGCGCGACTTTTAGCACCAATAAAT
CTTCCTATGATGTGCATAATCCCCGAAAAACACTTCACTATCAGGACGAG
GCATCAGTCGCCGTGCGTGTACAAAACGAATATCCTTCCGTGTGTCTCAT
TGCGCTTACGATATAATCTGAAGCACCTAACACGTACGTCTCCTTTACCT
CCCCCAACCCTACCACCTGCTTCCTGCTTTGTTCCCCTCCTTTCACACCG
AACGTCCGTCGATGTACTTGGTCTCACCGCAAAAGGCATCATGACCCACC
ATGTGGGGTACACGCTACTGTTCGAGCAGGCGTTGCAAGTGGTAAACTCG
GCAGTAACCGTCCCCTACTGGGAGTACACAATCGAAGGCAAGTCTGTCCA
GTGTGAGCGAGTGAAAAAATCCTTGCGGCCGTGGCTGAACCCCTCTCATA
ACGTACATCAGGTTACGTTGGAGACCGGTGGAATTATGTTCTTAAAATAT
TCGCACTTGCTTCTGGTTAGGAGAATAGGTTTGTGTATGTTTAGGGGGGA
GGATAGCGAAAATCGTTTAATATGCCGAGGGCGGCAACGACGTATCGTGC
TGGCCGGCTATGACCGAAACATTCTATACACGAGCCAAAACATAAAAAAA
AAAGTGTTTTGCGCCCACGGAGTGGTTGTGTTGCGAACGAGCAGGTACAC
TGATGAACTGCAATGTTTCCCGCTTCATGTATACCCATAAAACTATTTTG
GGCTCAAAGTTAGTAACGTGCACATTTGAACATGACGATGGTTGGTCCCC
TGGACTGCACCTCTCTCGGCGCTAAAATGGTGTGGATGTTCCGAGAGTTG
GGATGAGTTAAAGGTTCTTTAAATAAAATCTCCTCATGACACAAACTATC
GAGGGGAAGTTTCTCGTCAGCGAAGCTAGGCTGGGGTGGTCAACTGGTGA
CCAACCCAGTCATTAAATTGTTATAAAACACTCGACAGCAGTAATAACCC
CCCATATTCCACTGCCGTTACCCGGCCAAAGATAGTTGATGCAAAACGGT
CTTTCCTTATACATGATGTTTGTGAAGTCTTTACCTTGATTCCCCAAACT
CCTCTCCAAACTTCTCGCCCATTTACTTCGGGTTTCTGCGATAGAGTCGT
TAGGATACAGCTGGTACGGAGAATCCAAGGTTTTTGACCCCGACTGGTTC
GGCGATGCTAGCCCGGGCAACCCCCTGCACACGGTGGATAAAGGTCGCTT
CGCCTTCCTCCCTATCATGCAGGTGATAAAGCATTAGCCATGCTTTCATT
AATGTAAAGCATTTAACCTCTGTGTTGTGTGTGTGCGTGTGTGTGTATAT
ATTTATTAAATTGCGCATAACCGCACAATCCGAATCTGTCATGTTAGCTC
TTCTAAGCTAGTCTCACATTGATCCTCTTAATGGCGAATTCAATAATATT
TGCTACAAAACCTCAGATCAGACAGAATATATATATATATATATATAAAT
ATATGTGTGTGTGCCGACCGCTTCAGCTTTGTCTGCGACGTCCGTAGCTC
TTACGGAAGGTTAGCGGGGAAGAAGGCTGAGAAGCGAGGATAGTAGACTA
GTATGGACGAAAAGATCAATACGTAGTGGCCACGATCCGCGCGGGCGTTT
ACAGCAGCCAGAACTCGTTCTCGGGTGGGAGGCCATTGTATAAAATGAAC
GAGTAGCATCATTAGATCCCCATATTACAGACGATGGACACCTCTTGACT
TTGGAAAAAGATAGTCAGCCGTTCGCTTTCCCCATTTTTAGTTAAATTTC
CACTCGTAGATTAATTTTCTTTCTTCTTGTGATTTTTATTCTGCAACAAC
ACACTGGTGACCGGAAGTCGCAGCCTTATATCATCTTTCTGAACTCCCCA
TTTCCGCAAATAAAAAAGAAACAAGAAAAGGACCGAGGACCGAATCATAT
AAGCGGGATTACCCACCATACACAGTACAGTATATTAATCGGATGAGTAG
GCAAAATACTGAAAGTAAGAAGTAGCAATAACACGGCAATTCTGTGTGGA
TGTCGTTGCGTTGATCTCTCCGCTTGGTAGGACGCCACCGAGTACGTTCA
TAACGCCTACGGGCTTCTTCGGACTCCGTGGAACTTGGATTCGACGCCCT
TTGTGACGCGGCACAATGTTACTAACAACGTGGTGAGCTGATGGCCGCTT
TCCCTATTACTGTGCTATAAGCTCTCTAATTAGTAAAACGAGAAATTACC
TAAGCGCTTTTCTAGCACCATCAGCAGCATTAACATGAGCAGTGTGAGGC
GACAAAAGGTTGAGAGAGACGTTGTTCTAATGAAGCCATGAACGAGCTTT
GTAATGCATGCAACCAGGAAGTAACTGCCGTCTGTCAAAACCGATACGCT
CGCCCCCGCCTTCCTACGCTCCATTATTTCAATACAGCCTAAGGCACTAT
ATTTATCAAATAGATGGCGTTGAAATACCTTCTTTGCGATGAAGAGTCGG
TCACAGTTCAACTGGTCCCACTGTTAGAGAGGATCTGCGGTATTCGAGGA
CCAGACGCCATCCGTTCCCCGATACCAAAGTCTGGCGCGAGAACTCTTGC
ACGCTACGTTGCGTTTCCATGTAGCAAACTTGAATGTTCTTGTCTTCACT
CGATTTTCTCTTTTCGCTGCCGCGTCAGGACTTGACCGACATGGTTTCGT
GTGAGGATTACGTGGGGTGCTTCTCCAGCGACAGCCTCGCCTCGCTTAAC
AACTGCCTAAACGGAGGCACACACGGCCCGGTAAATACAAGATATGGAAA
AAGAACTAGTTAGAAGAGAGAGATATGGTGGAAGCATGCATTCGTTTACC
ACAATAGAAATACCGATAGTCGTTATAATCAAAGAAAAACGTTGAATAGC
GCATGAAACTATATGTTGCACTATCGCACATGTTGTCCAATCTACCAAGA
GTGGGTGTGGGTAAATAGAGGCGTACAATGATTGGTCCACATGGTTACCT
AAGTAGACTGCACCCGTTACACAAGCTACCTTGAGAACTGCTGGCTCAGT
GTCGGTGGTCTCTAGGTCGTTAGCGCCATGGGTACCCAATTGCGTAACCT
GATGAAATTGGGATTGGCCCGATGGCGGTTGACGGTAGAGAAGGACACCG
TCACGGAAAACGAGAGGATCCCGGGAGTGCGACCCATATTTAGCCAGGGT
AAATCGAAAGAGCAGGCTAACGCAAGGATGGGACTACCGAACCCGTCTCG
CGAGACTAAATTGCCAGAAGCAAACAGGGACAGGAAAAAATAATCTTCCC
TGTTCAGCTGACCACAAACAGGAGGCAACTCAATCCGGTGTATCCTTACT
CTGCCATATATGATGACCGCATATTATTCATTCCAAACGTAGGCGTGTGG
AACGGGAGAACGATGAACTCTCCCGTCTTATCTCCTTCTTGGCATCTTTC
CCTTCGCATTCTTTCCCAACTGCTGCCATGCTACCATGATCTTTGTGACG
CCACATCAGGTACACATTCTCGTTGGTGGAGAGTGGAACGACCCCGAAGA
AGTCTTTACTGAGATGACAAGTGAGTGAGAATGCAGCCCGCTCTCGTTCT
CCATTTTTTTTTCTTCTTTTTTTTTCTAGGCACTGGGCGTTCCTTCAGCT
GAGTTGTTTGCTGAGACATACATCTCGCTAACCCCTCGTCTTCGCAAACG
CAAAACAAGTCACCGTCGTCGTGCTCACTGAAAACCACCATGCAAGCTAA
CCAAACCACCGCGCGAGGCTGAACGAGAGAACGAACGAATGATACATTGG
ACAAATGAAAGAAATAATAAATATTCAAATATATATTTATTAGTCGCCTT
CGATACTGTCCTGTATCAAATTTATCACTGTACCAATAGTAGCGGGCGGG
CGAAATAAAGGTACCCATAACATATGTCCATGGGGTTACCTGATTTTGCA
GCACCCGTCTTTCATGCTACCTTGAGGACTAGTCTGCCAGTGCCATCGGA
CTGTAGGTTGTGAACGCCACCGGTAAGAAATTGCGTGACCTGATTAACTC
GGTATTTCCCTGATGCCAGTTGACCGTAAATCTGGACACCGTTGCGGAAA
GCAGGAAAAACGAGAGTATCCCGGGAGTAAGAATCAGAATCCGTCTGTTC
TGTGGACCGAATGAGAGGACTAATGCGGGACGGAACGGCCGAACCCGCCA
CGCCAGGCCAAATGTTATACCCCCCCCCCCTCTTCCCCTTCATGAAGGGC
TATCCCTGTTCAGCTGACCATGAGCAGCATGATTGGCCACCATATCCTGT
TAATTCGTATTCTGCTATAAATTGACTATAAACATAGGGCTGAATGGGTG
AACATATGAATCGATGGGTGGATTAACGAATAAATCAACAGAAAAATTAT
CTTAGGACGAAACGAATAAATGGACGCAATTCTTTAGCCTCGATGTATCC
ACGTCTGCAGCTCTGATAGCTCTCTTATTTATACAGTCTAGCTCATGAGA
TGCACATCATGCGCAGAGTTGCCCCTTTGCTTGCTTAGCCCAACCTATGT
ATTTAATGTTCACCTTGGCTTGCTCGGCCATATTTTTACATCTTGGTCTC
CTGCCGCGCAGCAAGTGCCTTGCATATTTTGAATCCCATACATTGCCTGA
CAGTAAAAAAGGTAGAAACATCATTAACGAAATGATGAACGAACCCGGTG
CTATACGTTCAATTTGGTTATAAAGCATTAATAGTGAGTGAGTACGGGAT
AGTGTTTTTTTTTTGTTTTTTTACCTTCCTAGGCTCCAGCACTCTTCTTG
TGACCACGGGCTCTAGATTTTTAGAAAAAAGCTTATGTGAGGATTCAATT
CAATTCAAATCTTACGAAGAAAATGCAGCACACGATGCAAGCGCACACAT
CAACCAAGAAAGTCTACCGAAGAAGGATGCGCCAAACGTACAGCGATCTA
TAAATATCACAATCCAAAGAAGCTACAAATACCCGCACACGCACACTCAT
AGAAAAATGATCACGCTTCATGCTGCTTGGAGCAAACGTCCGGACTCTCA
TGGCCCTATGGCTTTCTATGTTCCTGCTTCTGCATCTGGTTCTCGTAGTT
AAAGGCGTTGCTATGCATACTAGATAGTATAAGTATATCGCCCGGTCGAG
CTACGTATACAGATATAATCGAACGAAATTGGGCACTGCCTTAATACGTT
TGCTTTCTATGATGTTTATGTAAATGCTTGTACTAGGAGGAAGTGCTAAT
CTAAGGACGCGTTCTCGTCTTTATAAGGCACGAAACATCGGTTGGCTTGC
CCTAGTTTGTGAAGTCACGCAAAATCACGTTGTACACGAGAAATATTTAT
GGCCTCTGTCGTGTAGATATCGCTGTCAGTCATCTAGCGCTCCAGAGGAG
AACGAGAAGACGCGAGAAGCGCGCTATGGCGAGCGCATTTCTACTCAAGG
CCTGTACAGCTTCTGGGCATCGACAAGACTTTGCCTTATCTCGCTCTTCT
GCACTGCTGGTTGAAAGCAATAGTTTAGTAGTTTGCGTTCCAAGCCATAC
AACCTACTACCGGCGACTATTGCTGAGTACACGTTGGCAGCTACCAAGGC
CTGTTAGCGGTTGCTTGGCCTCGTGCGTAAGCACTGTTACATCCTCGAGA
GCTTTGGACTTGGTCAGCGGGGTATCATCCCACATATGAATTTTCCTTCT
CCCGAGTGTTTTAGGCTTTAAGAACCCTGGGTATATCATTCCGAGACTCT
TTTCATTATCCACCCTTTCAGGTTGCCAGGACGAGTATCCCGTATCACCG
ATTTGAAGTTGGCCTATTTTTAACAAAGTTCGCCTGCTCTTCTGACCTAT
GCCCTCCCCCCTAACCCATAATGGCACAAAGTCATTTCTTGGCTGCTCCC
GCAAAAAAACAGGGACTTGCAAAGACACGCGGCTAGCGCATAGCACTCAA
AATGCTTGAAGGCGTGATTGGGTAGTAATTGGAACTTCACGCGCCCGCGT
CCTCTACACTAAACAAGTCTTGAAGCTTTCAGTCTTACGTACCGATATCT
TGCCCCTCTTCCGTCCACCTGCGCCCCCTTCACCCAAGACTATGGTAACG
TCATCCCGTTGATCACAAAGTACCTATGGAGGAAAGGATACCTGCGTTTA
CCGGAGGAATGTTCGCCTGAGAAAGACGGAGTTGGTGACAGCTCGACTTG
CCGAGCGAGCTGCCCGGTGGAGCTATACGAGTCTCGAGGGATGAAGCCAT
ACGACGTTCTCGTGGATGTTTTGGCGCTCTATTGGATTTCAACCTTCACC
GACGGAATCATCGTGAGTACCATATATGCGTATATGTGTGGCAGGTCGGG
ACCCAGGCAGAGGTAATTATTATCAGGTACTTTTTTGTTGGGTGGTGAGT
GTATCCTCTATTGTTTAGTGCTTCTTGCGTCCAGCTGCAAGGTAGGTGCT
CACGTGGCGTGGGCACTTTGATTGAAGATTTGTTCTCAATCTACGGAGGA
TTTGACCAGCTCTCGTGGTGAAGCCCGCAGCCCTCCTCGCTATCCTAATT
TTCCCTTGCTTCTACTTTTGTTTGCGACTTTAGTTGAGACTGCTGCGGCA
ATATCCCCTAGGGGCGTAGGATAGAGGGAGTCGCCATTAAATGTTACTGT
TCGTGAGGTACCCAAGGTAATGCTTCGAGCAAAAAGGATGCGGCCCTCAC
TAGACCATTATTTGATGCTTCATGAGTGGCATGTGCGCACCCGACAAAAA
ACTAGATTTTCCGGAGCAACACTTTCAGCGGCTATTAGGAAAAAATAAAT
GAAAGAGAGGACTTTTCCAGCGTCTGGTAAAAATCCACGTTCTTATGGGT
TGGGCTGCCCAATTCAGGAGAGATAAGCAGACAACGTCAGTGGTCCGAGT
AACGACAAAGCAGCATGATTCAGGACGCAACCAAACTCTCGCGAGTCTCG
TCATGATATATATATATATATATATATATTCACTTCCTTTCACCTATGCG
TGTTGTTCTCCCTGCTTACCCAACCCACCCGTAGAAACATATTGCAGGGG
AAAACCGTTTCGTGGTAGCCGGGCACGAGGATGATCTGGATTTCCAAGAT
GCATTTTGGCGGAAGATGCTGAATTCATTCTGCGACCCAGGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5468:125..10569+

>mRNA_H-elongata_contig5468.12859.1 ID=mRNA_H-elongata_contig5468.12859.1|Name=mRNA_H-elongata_contig5468.12859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2352bp|location=Sequence derived from alignment at H-elongata_contig5468:125..10569+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGCTGTACCATTCGGAACAAATGACAGGGAGATAAAGTTTACGTA
CAAGCACTTGGGCAAGCAGCGAGTCATCATATCCCAGATTGTTGCATCGA
CGGGGAGGACGATTCATCTGAAAACCTACGTCATGGTTAAGATGGCTGCT
GTACCATTCGGAACAAATGACAGGGAGATAAAGTTTACGTACAAGCACTT
GGGCAAGCAGCGAGTCATCATATCCCAGATTGTTGCATCGACGGGGAGGA
CGATTCATCTGAAAACCTACGTCATGGTTAAGTACGTGCGGCGGGAGATA
CGACAGCTGACCGACGACGATCGCGATGCGTTTTTCCATGCTGTGGAGAC
ACTCTACCGTTTACCAACCTCTCAGGGAAATCTGATCTACGGAAATATTT
ACAAGTACGTGCGGCGGGAGATACGACAGCTGACCGACGACGATCGCGAT
GCGTTTTTCCATGCTGTGGAGACACTCTACCGTTTACCAACCTCTCAGGG
AAATCTGATCTACGGAAATATTTACAAGGGCATCGAGTTCTTCGTGCAGA
TGCACTTAGACGGGGCCGGCATCAAGGACTGCGACCACTGGCACGACGAC
GCCGGGCATCGAGTTCTTCGTGCAGATGCACTTAGACGGGGCCGGCATCA
AGGACTGCGACCACTGGCACGACGACGCCGGCATCATGACCCACCATGTG
GGGTACACGCTACTGTTCGAGCAGGCGTTGCAAGTGGTAAACTCGGCAGT
AACCGTCCCCTACTGGGAGTACACAATCGAAGGCAAGTCTGCATCATGAC
CCACCATGTGGGGTACACGCTACTGTTCGAGCAGGCGTTGCAAGTGGTAA
ACTCGGCAGTAACCGTCCCCTACTGGGAGTACACAATCGAAGGCAAGTCT
TCGTTAGGATACAGCTGGTACGGAGAATCCAAGGTTTTTGACCCCGACTG
GTTCGGCGATGCTAGCCCGGGCAACCCCCTGCACACGGTGGATAAAGGTC
GCTTCGCCTTCCTCCCTATCATGCAGTCGTTAGGATACAGCTGGTACGGA
GAATCCAAGGTTTTTGACCCCGACTGGTTCGGCGATGCTAGCCCGGGCAA
CCCCCTGCACACGGTGGATAAAGGTCGCTTCGCCTTCCTCCCTATCATGC
AGGACGCCACCGAGTACGTTCATAACGCCTACGGGCTTCTTCGGACTCCG
TGGAACTTGGATTCGACGCCCTTTGTGACGCGGCACAATGTTACTAACAA
CGTGGACGCCACCGAGTACGTTCATAACGCCTACGGGCTTCTTCGGACTC
CGTGGAACTTGGATTCGACGCCCTTTGTGACGCGGCACAATGTTACTAAC
AACGTGGACTTGACCGACATGGTTTCGTGTGAGGATTACGTGGGGTGCTT
CTCCAGCGACAGCCTCGCCTCGCTTAACAACTGCCTAAACGGAGGCACAC
ACGGCCCGGACTTGACCGACATGGTTTCGTGTGAGGATTACGTGGGGTGC
TTCTCCAGCGACAGCCTCGCCTCGCTTAACAACTGCCTAAACGGAGGCAC
ACACGGCCCGGTACACATTCTCGTTGGTGGAGAGTGGAACGACCCCGAAG
AAGTCTTTACTGAGATGACAAGTACACATTCTCGTTGGTGGAGAGTGGAA
CGACCCCGAAGAAGTCTTTACTGAGATGACAAACTATGGTAACGTCATCC
CGTTGATCACAAAGTACCTATGGAGGAAAGGATACCTGCGTTTACCGGAG
GAATGTTCGCCTGAGAAAGACGGAGTTGGTGACAGCTCGACTTGCCGAGC
GAGCTGCCCGGTGGAGCTATACGAGTCTCGAGGGATGAAGCCATACGACG
TTCTCGTGGATGTTTTGGCGCTCTATTGGATTTCAACCTTCACCGACGGA
ATCATCACTATGGTAACGTCATCCCGTTGATCACAAAGTACCTATGGAGG
AAAGGATACCTGCGTTTACCGGAGGAATGTTCGCCTGAGAAAGACGGAGT
TGGTGACAGCTCGACTTGCCGAGCGAGCTGCCCGGTGGAGCTATACGAGT
CTCGAGGGATGAAGCCATACGACGTTCTCGTGGATGTTTTGGCGCTCTAT
TGGATTTCAACCTTCACCGACGGAATCATCAAACATATTGCAGGGGAAAA
CCGTTTCGTGGTAGCCGGGCACGAGGATGATCTGGATTTCCAAGATGCAT
TTTGGCGGAAGATGCTGAATTCATTCTGCGACCCAGGGTAAAAACATATT
GCAGGGGAAAACCGTTTCGTGGTAGCCGGGCACGAGGATGATCTGGATTT
CCAAGATGCATTTTGGCGGAAGATGCTGAATTCATTCTGCGACCCAGGGT
AA
back to top