mRNA_H-elongata_contig54679.12858.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: D7FTB4_ECTSI (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB4_ECTSI) HSP 1 Score: 457 bits (1177), Expect = 9.470e-152 Identity = 217/247 (87.85%), Postives = 236/247 (95.55%), Query Frame = 1
Query: 1 MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
MQVCSCNNVDKGAIFRAVTEDGLT+V EVKS TKAGTGCGGCEPMVKDIFAFAM+SSGKEVSTD+CEHF YTRQELYDIV+A ++SF+ELL++HGHGDGCE+CKPLVSSILASVNNDMIF+N+GMTLQDTNDRALANMQRGGSYSVIPRVP GEL PEQLI MG VAKKYNLYTK+TGGQRID+FGAEKH+LP+IW ELG++GLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAV +ENRYKG
Sbjct: 440 MQVCSCNNVDKGAIFRAVTEDGLTSVGEVKSCTKAGTGCGGCEPMVKDIFAFAMKSSGKEVSTDVCEHFHYTRQELYDIVRATGVKSFDELLDSHGHGDGCEVCKPLVSSILASVNNDMIFNNDGMTLQDTNDRALANMQRGGSYSVIPRVPGGELTPEQLICMGQVAKKYNLYTKVTGGQRIDMFGAEKHQLPSIWAELGEAGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVRLENRYKG 686
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A6H5L7C3_9PHAE (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C3_9PHAE) HSP 1 Score: 451 bits (1159), Expect = 2.380e-150 Identity = 213/247 (86.23%), Postives = 234/247 (94.74%), Query Frame = 1
Query: 1 MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
MQVCSCNNVDKGAIFRAVTEDGLT+V EVK TKAGTGCGGCEPMVKDIFAFAM+SSGKE+STD+CEHF YTRQELYDIV+A ++SF+ELL++HGHGDGCE+CKPLVSSILASV+NDMIF+N GMTLQDTNDRALANMQRGGSYSVIPRVP GEL PEQLI MG VAKKYNLYTK+TGGQRID+FGAEKH+LP+IW ELG++GLESGHAYGKALRTVKSCVGSTWCRYGVQDAV+FAV +ENRYKG
Sbjct: 427 MQVCSCNNVDKGAIFRAVTEDGLTSVGEVKFCTKAGTGCGGCEPMVKDIFAFAMKSSGKELSTDVCEHFHYTRQELYDIVRATGVKSFDELLDSHGHGDGCEVCKPLVSSILASVHNDMIFNNGGMTLQDTNDRALANMQRGGSYSVIPRVPGGELTPEQLICMGQVAKKYNLYTKVTGGQRIDMFGAEKHQLPSIWAELGEAGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVTFAVRLENRYKG 673
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A2E3Z7Y8_9PLAN (Nitrite reductase (NAD(P)H) small subunit n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3Z7Y8_9PLAN) HSP 1 Score: 355 bits (910), Expect = 1.890e-112 Identity = 166/246 (67.48%), Postives = 200/246 (81.30%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV K I A++E GLTT+A VKS TKAGTGCGGC P+V DIF + +G EV+ LCEHFAY+RQEL+ IVK + +++ELL +HG+G+GCEICKP V+SILAS+ ND I + TLQDTNDR LANMQRGG YSV+PRVP GE+ PE+LI +G+VAKKY LYTKITGGQRIDLFGA+ H+LP IWEEL +G ESGHAYGKA+RTVKSCVG+TWCRYGVQD+V FA+ +E RY+G
Sbjct: 423 QICSCNNVSKDDISAAISEQGLTTLASVKSCTKAGTGCGGCMPLVTDIFKSELAKAGVEVNNHLCEHFAYSRQELFTIVKVKEVHTYDELLASHGNGNGCEICKPAVASILASLWNDTIMEPQHQTLQDTNDRFLANMQRGGLYSVVPRVPGGEITPEKLIALGEVAKKYALYTKITGGQRIDLFGAQLHQLPDIWEELINAGFESGHAYGKAVRTVKSCVGTTWCRYGVQDSVRFAIEVEKRYRG 668
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A5B9QI18_9BACT (Nitrite reductase [NAD(P)H] n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9QI18_9BACT) HSP 1 Score: 354 bits (909), Expect = 2.460e-112 Identity = 165/246 (67.07%), Postives = 203/246 (82.52%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV KGAI A+TE GLT++ ++KS TKAGTGCGGC P+V D+F +E SG EV+ +LCEHFAY+RQEL+ IVK I++F EL+ ++G G+GCEICKP V SILAS+ ND I + + TLQDTNDR LANMQRGG YSV+PRVP GE+ P++LI +G+VAKKY LYTKITGGQRIDLFGA+ H+LP IWEEL +G ESGHAYGKA+RTVKSCVG++WCRYGVQD+V FA+ +E RY+G
Sbjct: 423 QICSCNNVTKGAICAAITEGGLTSLTDLKSCTKAGTGCGGCMPLVADVFKAQLEKSGVEVNNNLCEHFAYSRQELFGIVKVKEIKTFAELITSYGSGNGCEICKPAVGSILASLWNDTIINADHQTLQDTNDRFLANMQRGGLYSVVPRVPGGEITPDKLIVIGNVAKKYGLYTKITGGQRIDLFGAQLHQLPDIWEELIDAGFESGHAYGKAVRTVKSCVGTSWCRYGVQDSVRFAIEVEKRYRG 668
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A354GZY4_9BACT (Nitrite reductase (NAD(P)H) small subunit (Fragment) n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GZY4_9BACT) HSP 1 Score: 349 bits (895), Expect = 1.320e-111 Identity = 163/246 (66.26%), Postives = 202/246 (82.11%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV KG I A+ E L +V E+K TKAG GCGGC P+V D+F A+++SGK+V+ LCEHF+ TRQEL++IVK RI+SF+E++ +HG G GCEICKP V+SILAS+ ND++ + + T+QDTNDR LAN+QRGGSYSV+PRV GE+ PE+L+ +G VA+KY LY+KITGGQRIDLFGA H+LP IWEEL +G ESGHAYGKALRTVKSCVG+TWCRYGVQDAVSFA+ +ENRYKG
Sbjct: 267 QICSCNNVSKGQICDAIREKNLCSVEEIKLCTKAGAGCGGCVPLVTDLFKAAVKASGKKVNNALCEHFSCTRQELFEIVKIKRIKSFDEVIGSHGRGQGCEICKPAVASILASLWNDLVVEQS--TIQDTNDRFLANLQRGGSYSVVPRVAGGEITPEKLVVLGQVARKYGLYSKITGGQRIDLFGAAAHQLPDIWEELVNAGFESGHAYGKALRTVKSCVGTTWCRYGVQDAVSFAIRVENRYKG 510
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A3A0DAU8_9BACT (Nitrite reductase (NAD(P)H) (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DAU8_9BACT) HSP 1 Score: 346 bits (888), Expect = 4.910e-111 Identity = 162/246 (65.85%), Postives = 196/246 (79.67%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV KG + A+ E LTT+ VK+ TKAGTGCGGC P+V DI + + GK V+ DLCEHFAYTRQ+L++IVK +++F+ELL +HG G GCEICKP V+S+LAS+ N+ I D TLQDTNDR LANMQRGG YS++PRVP GE+ P++L+ +G VAKKY LYTKITGGQRIDLFGA+ +LP IWEEL +G ESGHAYGKALRTVKSCVGSTWCRYGVQD+V FA+ IE RY+G
Sbjct: 419 QICSCNNVTKGQLCAAIREQELTTIGAVKACTKAGTGCGGCVPLVTDILNKELAALGKSVNRDLCEHFAYTRQQLFEIVKIKELRTFDELLASHGRGHGCEICKPAVASMLASLWNEPITDRAHHTLQDTNDRFLANMQRGGLYSIVPRVPGGEITPDKLVVLGTVAKKYGLYTKITGGQRIDLFGAQVQQLPEIWEELVNAGFESGHAYGKALRTVKSCVGSTWCRYGVQDSVGFAIRIEERYRG 664
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A8J9TG59_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TG59_PHATR) HSP 1 Score: 347 bits (891), Expect = 9.190e-111 Identity = 167/252 (66.27%), Postives = 198/252 (78.57%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGL--TTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKA----GRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCN+V +G I + E G+ T++ VK + AGTGCGGCEP VKDI + G +S LCEHF+Y+R EL +V+ + SFE++L HGHGDGCE+CKP V SILAS+NN +I D+ LQDTNDRA+ANMQRGGSYSV+PRVPAGELLP+QLI +G VAKKY+LYTK+TG QR+DLFGA KH+LP IWEELG++G ESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAV IENRYKG
Sbjct: 460 QICSCNDVTRGDIASTIVELGVEGATLSAVKKCSNAGTGCGGCEPQVKDILKQELAKLGGTLSNHLCEHFSYSRPELMALVRTDTDPSSVDSFEKVLHKHGHGDGCEVCKPTVGSILASLNNGIIIDDGRDALQDTNDRAMANMQRGGSYSVVPRVPAGELLPDQLIALGVVAKKYDLYTKVTGAQRVDLFGAAKHQLPDIWEELGQAGFESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVEIENRYKG 711
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A3ZZT4_9BACT (Nitrite reductase (NAD(P)H) large subunit n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZZT4_9BACT) HSP 1 Score: 350 bits (897), Expect = 1.170e-110 Identity = 159/246 (64.63%), Postives = 199/246 (80.89%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV KG I A+ ++G+ V ++K TKAGTGCGGC P+V D+ A ++++GK +TDLCEHFA+TRQELY+IV+ I+SF +L+ HG G GCEICKP V+SILAS+ ND I + TLQD+NDR LAN+QRGGSYSV+PRVP GE+ PE+LI +G+VAKKY LYTKITGGQR+DLFGA+ +ELP IWEEL +G ESGHAYGK++RTVKSCVGSTWCRYG+ D+V FA+ IE RY+G
Sbjct: 424 QICSCNNVTKGRICEAIRDEGIDNVGDLKMCTKAGTGCGGCMPLVTDLLAAELKAAGKAANTDLCEHFAHTRQELYEIVQLKEIKSFNDLIAQHGRGHGCEICKPAVASILASLWNDQILEPEHQTLQDSNDRFLANIQRGGSYSVVPRVPGGEITPEKLIVLGEVAKKYKLYTKITGGQRVDLFGAQAYELPEIWEELVNAGFESGHAYGKSVRTVKSCVGSTWCRYGIGDSVGFAIAIEERYRG 669
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: A0A2S8FWH4_9BACT (Nitrite reductase (NAD(P)H) small subunit n=3 Tax=Blastopirellula TaxID=265487 RepID=A0A2S8FWH4_9BACT) HSP 1 Score: 349 bits (896), Expect = 1.650e-110 Identity = 160/246 (65.04%), Postives = 201/246 (81.71%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSCNNV KG I A+ ++G+ TV +K TKAGTGCGGC P+V D+ A +++ GK +TDLCEHF++TRQELY+IV+ +I++F +L+ +HG G GCEICKP V+SILAS+ ND I + TLQD+NDR LAN+QRGGSYSV+PRVP GE+ PE+LI +G+VAKKYNLYTKITGGQR+DLFGA+ +ELP IWEEL +G ESGHAYGK++RTVKSCVGSTWCRYGV D+V FA+ IE RY+G
Sbjct: 424 QICSCNNVTKGRICEAIRDEGVDTVGGLKMCTKAGTGCGGCMPLVNDLLAAELKALGKSANTDLCEHFSHTRQELYEIVQLKQIKTFNDLIASHGRGHGCEICKPAVASILASLWNDQILEPQHQTLQDSNDRFLANIQRGGSYSVVPRVPGGEITPEKLIVLGEVAKKYNLYTKITGGQRVDLFGAQAYELPDIWEELVDAGFESGHAYGKSVRTVKSCVGSTWCRYGVGDSVGFAIRIEERYRG 669
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Match: F4C4C2_SPHS2 (Nitrite reductase (NAD(P)H), large subunit n=2 Tax=Sphingobacteriaceae TaxID=84566 RepID=F4C4C2_SPHS2) HSP 1 Score: 345 bits (885), Expect = 2.300e-110 Identity = 159/246 (64.63%), Postives = 197/246 (80.08%), Query Frame = 1
Query: 4 QVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFAFAMESSGKEVSTDLCEHFAYTRQELYDIVKAGRIQSFEELLENHGHGDGCEICKPLVSSILASVNNDMIFDNNGMTLQDTNDRALANMQRGGSYSVIPRVPAGELLPEQLITMGDVAKKYNLYTKITGGQRIDLFGAEKHELPAIWEELGKSGLESGHAYGKALRTVKSCVGSTWCRYGVQDAVSFAVTIENRYKG 741
Q+CSC + KG I A+ +D LT +A +K TKA TGCGGC P+V D+ +ES GK V LCEHFAYTRQELYD++K I+S+ ELL +G GDGCE+CKP V+S+LAS+ N++I + T+QDTNDR LAN+Q+GGSYSV+PR+PAGE+ P++L+ + VAKKYNLYTKITGGQRIDLFGA+ HELPAIWEEL +G ESGHAYGK+LRT+KSCVGSTWCR+GVQD+V FA+ IENRYKG
Sbjct: 419 QICSCEGISKGNICEAIAKDELTDLAGIKKATKACTGCGGCTPLVADLLKSVLESQGKVVKKTLCEHFAYTRQELYDLIKIQNIKSYSELLGRYGEGDGCEVCKPAVASLLASIWNEVILKQS--TIQDTNDRFLANIQKGGSYSVVPRIPAGEITPDKLLVIAQVAKKYNLYTKITGGQRIDLFGAQLHELPAIWEELIAAGFESGHAYGKSLRTIKSCVGSTWCRFGVQDSVGFAIEIENRYKG 662 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54679.12858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54679.12858.1 >prot_H-elongata_contig54679.12858.1 ID=prot_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=247bp MQVCSCNNVDKGAIFRAVTEDGLTTVAEVKSVTKAGTGCGGCEPMVKDIFback to top mRNA from alignment at H-elongata_contig54679:47..1851+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54679.12858.1 ID=mRNA_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1805bp|location=Sequence derived from alignment at H-elongata_contig54679:47..1851+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54679:47..1851+ >mRNA_H-elongata_contig54679.12858.1 ID=mRNA_H-elongata_contig54679.12858.1|Name=mRNA_H-elongata_contig54679.12858.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1482bp|location=Sequence derived from alignment at H-elongata_contig54679:47..1851+ (Himanthalia elongata Himel1 dioecious)back to top |