mRNA_H-elongata_contig5466.12857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5466.12857.1
Unique NamemRNA_H-elongata_contig5466.12857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 7.050e-66
Identity = 113/149 (75.84%), Postives = 129/149 (86.58%), Query Frame = 2 
Query:    5 TFASKIAVGMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVL 451
            TFA+K+AVGMGQMETKVFPA FP+DF+IEGLRGK+ALVQAVVK+IAR+E K PETRSDDE+R  LR +GE T++NR D AVD AVKK LL+SC V+ADKVLNAVSWAKFGE+STL+FKWNCIKEKIA  EGIEPR V   LR EA V+L
Sbjct:  102 TFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVIL 250
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN)

HSP 1 Score: 105 bits (262), Expect = 3.090e-23
Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 2 
Query:    2 NTFASKIAVGMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 448
            +TF   IAVGMGQ E K F   FPDD+ +  L GK+   +  VK I  R  K  + R + E R       EA+M+      VD A+++ L+ +C  D  K   AVSWAKFGEKSTL+ +W  IKE I  +EGI+  +      R+ N V
Sbjct:   23 STFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDKVDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTV 171
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 108 bits (270), Expect = 5.590e-23
Identity = 61/149 (40.94%), Postives = 85/149 (57.05%), Query Frame = 2 
Query:    2 NTFASKIAVGMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVV 448
            +TFAS IAVGMGQ E K F   FP D+ +  L+GK+   +  VK I ++  K P+TR ++  R     + EA ++      VD A++  L+ +C  D  K   AVSWAKFGE+STL+ +W  IKE I  EEGI+         R++N V
Sbjct:  168 STFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTV 316
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU)

HSP 1 Score: 102 bits (255), Expect = 2.460e-20
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 2 
Query:   29 GMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANV 445
            GMGQ E+K F  VFP DF+   LR  +A     VK+I  +++ P +TR + E R  ++    A  + + +  +D  ++  LL S E D DK+ + VSWAKFGE S  +FKWN + E++A  E I   +V   LRREA++
Sbjct:  286 GMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEIKDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADI 424
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI)

HSP 1 Score: 97.4 bits (241), Expect = 1.710e-19
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 2 
Query:   20 IAVGMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDE-LRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPRE-VTALLRREANV 445
            +  GMGQME+K FP  FPDD+Q E LRG   L   ++K IA +   P  T +D   LR  +  R +   +       D A++  LL  CEVD  K + +V+WAKFGE+S  ++ ++ I E+I   EG+  ++ +   LR EA++
Sbjct:  110 VEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEADRATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASI 253
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BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI)

HSP 1 Score: 92.4 bits (228), Expect = 4.210e-17
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 2 
Query:    5 TFASKIAV-GMGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDDELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKFGEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANV 445
            TF  +I   GMGQ E+K F   FP D++   LR   A     V  I  ++    + R +  +R  +     AT + + +  +D  V++ LL + E D DKV  +VSWAKFGEKS  +FKWN + E++A  E IE  E  A LRR+A V
Sbjct:  198 TFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATV 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5466.12857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2Q9_ECTSI7.050e-6675.84FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A7S1MV31_HEMAN3.090e-2340.94Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VQZ5_9CRYP5.590e-2340.94Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A388KP71_CHABU2.460e-2039.57Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A7R9Y821_9VIRI1.710e-1937.50Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A1Y1I108_KLENI4.210e-1738.51Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5466contigH-elongata_contig5466:5146..7531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted hypothetical protein
Ec32 orthologEc-11_003150.1
Exons5
Model size1240
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.970391-UTR-H-elongata_contig5466:5145..55811622930890.970391-UTR-H-elongata_contig5466:5145..5581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 5146..5581 -
1691679613.549812-UTR-H-elongata_contig5466:5145..55811691679613.549812-UTR-H-elongata_contig5466:5145..5581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 5146..5581 -
1622930890.9960933-UTR-H-elongata_contig5466:5758..61051622930890.9960933-UTR-H-elongata_contig5466:5758..6105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 5759..6105 -
1691679613.5576396-UTR-H-elongata_contig5466:5758..61051691679613.5576396-UTR-H-elongata_contig5466:5758..6105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 5759..6105 -
1622930891.134681-UTR-H-elongata_contig5466:7500..75311622930891.134681-UTR-H-elongata_contig5466:7500..7531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 7501..7531 -
1691679613.6133175-UTR-H-elongata_contig5466:7500..75311691679613.6133175-UTR-H-elongata_contig5466:7500..7531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5466 7501..7531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.055204-CDS-H-elongata_contig5466:6105..62611622930891.055204-CDS-H-elongata_contig5466:6105..6261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6106..6261 -
1691679613.5657709-CDS-H-elongata_contig5466:6105..62611691679613.5657709-CDS-H-elongata_contig5466:6105..6261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6106..6261 -
1622930891.0860593-CDS-H-elongata_contig5466:6553..66281622930891.0860593-CDS-H-elongata_contig5466:6553..6628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6554..6628 -
1691679613.5759246-CDS-H-elongata_contig5466:6553..66281691679613.5759246-CDS-H-elongata_contig5466:6553..6628Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6554..6628 -
1622930891.0998306-CDS-H-elongata_contig5466:6992..71331622930891.0998306-CDS-H-elongata_contig5466:6992..7133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6993..7133 -
1691679613.5859582-CDS-H-elongata_contig5466:6992..71331691679613.5859582-CDS-H-elongata_contig5466:6992..7133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 6993..7133 -
1622930891.118711-CDS-H-elongata_contig5466:7446..75001622930891.118711-CDS-H-elongata_contig5466:7446..7500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 7447..7500 -
1691679613.5967255-CDS-H-elongata_contig5466:7446..75001691679613.5967255-CDS-H-elongata_contig5466:7446..7500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5466 7447..7500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5466.12857.1prot_H-elongata_contig5466.12857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5466 6106..7500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5466.12857.1

>prot_H-elongata_contig5466.12857.1 ID=prot_H-elongata_contig5466.12857.1|Name=mRNA_H-elongata_contig5466.12857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MGQMETKVFPAVFPDDFQIEGLRGKEALVQAVVKSIARREDKPPETRSDD
ELRVLLRQRGEATMQNRMDLAVDAAVKKTLLASCEVDADKVLNAVSWAKF
GEKSTLEFKWNCIKEKIASEEGIEPREVTALLRREANVVLS*
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mRNA from alignment at H-elongata_contig5466:5146..7531-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5466.12857.1 ID=mRNA_H-elongata_contig5466.12857.1|Name=mRNA_H-elongata_contig5466.12857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2386bp|location=Sequence derived from alignment at H-elongata_contig5466:5146..7531- (Himanthalia elongata Himel1 dioecious)
GAACACGTTTGCATCGAAAATTGCCGTGGGAATGGGTCAGATGGAGACTA
AGGTGTTCCCGGCAGTGTTCCCCGACGATTTCCAGGTGCGCACAAATGAA
ACATTACCCCAAGCACGAATGAAGACCGCGGCCTTCGTGGTGGTCGCTTG
CGTGACGTCATCGGCAGAAGGAGAAGGGAAAAAAAAGAAGAGATGAAAAT
TCCGTCGCGGGAGGTTTTGTGACCCTCGGAAGAGAGACGGCCGTGGGGCC
CAGAACGTTTATTTTTTGTGCTCAGTGCATCCTCCAGTTAAAAAGTAACG
GTAGTAACGGCGTAGGCCTCCACGATTTGTATGTGCCATGTGGTCTGTGA
TGCTTGTGTCCATCTCTCCATACTGTATCCCGTGCCGAGCGAGACCAGAT
AGAGGGTTTGCGGGGCAAGGAGGCGTTAGTGCAGGCGGTGGTAAAGAGCA
TCGCCAGGAGGGAGGACAAGCCGCCGGAGACGAGGAGCGATGACGAGCTA
CGAGTCCTGCTGCGCCAGAGGGGGGAGGCGACCATGCAGGCAGGTCGAGG
TTCCTGGGGAACGCGCGGTCTCTCTCATCGATCGATCGATCGAATCAGAA
CGGACGACGAAATATTCCTCGTGTCACACCTAAGCTGTTTCAGGGGGGCA
AGAACGCTGCGAAAGATACGTAGTAGGTGGAAAGAGCAGTACACACCCTC
CTGGAGACAGTAAATTCTCCCGCCCATCCTTGAATATCTTGGTTTTGGAA
TTATTTCTGCCTATAGGGAGGCGTCAAATGATCCTCCACATTGGTTATAC
CCTGCAGTTCCTGATGTTAGCTCGAGCACGCCAGAGGCGGTGGCCTTTAT
GCTGATTTGTGCGACGCCCTTACGCCGATTTGTAACTCTTCCGATGCCTA
CAGAACCGGATGGACCTAGCGGTGGATGCTGCTGTAAAAAAGACGCTTCT
AGCGTCGTGCGAAGTCGATGCCGACAAGGTACGCTCGAGAATCCCTCGAT
TTCGCGGGTCTTCGTAGAGAAGCTACGCCTCTGTCGCAACAGGGTATTTA
CCCACCCAATGGCTGGAATGCCGCCGTGGCTCATTGGGTGGTTGGCATTC
TGGAGTTCCATGATTTGGCAACCAAGGAAAAATTGCACCCCTGACTAGAA
AAGGGGCAACCAATAAGCTACTGTGACAAGTACACCAGTCAGTAGCAACA
TACCTCCTATGATTTATTGTTCTTGCTAGTTATTGTAATGTCTTGTTTTT
AATATGTTTCCATCCTGCAGGTGCTGAATGCGGTATCGTGGGCAAAGTTC
GGCGAGAAGTCGACGCTGGAGTTCAAGTGGAACTGCATCAAAGAGAAGAT
AGCATCGGAGGAGGGGATAGAGCCCAGGGAAGTGACAGCGTTGCTCCGGA
GGGAAGCTAACGTTGTGCTCTCTTGAAGGAAGTGAAACCCCAGCTCAAGG
AAGTTGTTTTTGATGCCGGTTCCGACATATTTCCCGCCCTTTGTAGCGCA
AGGAATGCAGGCCACATATTTTTCCCCTTTCAAATTTTGAGGATGTTAGA
GAAGAGTCTAGTGAATCAGTTCTGAGATATGTCTAGAGCAAGGATCATGA
TTACATATTTTTATATTACGCTTTGGGTACAAATTGTGCCCCCCATTCGG
CTCGACCTACGTCTACGTTATTACTATGAAATACTAGTAGTGTTTTTTAG
ACAAGTTCAATCTCACCCGAAACGCAGAAGGATCGATCGTCTTTCAAGGG
TGGATGACCGGGTTAACGTGGGGGCATCTGATGATTCGCGGGGAAATGAC
GCGTTTTCACGCTGTCTACTCCATTCAAACGAGAAAGCTCCCATCAATAT
ACAAATTAGAGTGCGACGAGAAAGAAAGTTCTACCGCAGAAATAATATTT
CAACAAATTGGAGGTACAGTACCCCACCTCCTTCCCCCCTCTGATCGGAG
CTGATATGCCTTTTGTCCGTGGCTAGTGTTAGAGAGTTCCACCTTCGTAC
GTGTTATTTTCTCCCACTCGTCGGAAAGAGACTCGTAGTTTGCGTCGATA
CTTATTATTATTATTAGCATTCTGGGATTTATATAGCAGGTATATATATA
TAATATATATATATATATTGTCAACATTTCAATTCAATGACACCTCCTTA
ACGAGGAAAAAAATTATAGCCATGTCGTAATCCAGTGATGTGGAAGTCAT
GGTTTCAATCCCCAGCAGGATGATTTTTGTTTTCTGTATAGCGGTATGAG
TATTTTTTAATAGTAACAAAAACAGGAAAACGGGAGAAAACAAAGTTCAA
GCATTGGCTAACGGGGTGTATCCAGAGGTAGGCTGACCTTGCATTGCGAT
AAGAATCGTTTAGGCTATTATAGGCGATAGAAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5466:5146..7531-

>mRNA_H-elongata_contig5466.12857.1 ID=mRNA_H-elongata_contig5466.12857.1|Name=mRNA_H-elongata_contig5466.12857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig5466:5146..7531- (Himanthalia elongata Himel1 dioecious)
ATGGGTCAGATGGAGACTAAGGTGTTCCCGGCAGTGTTCCCCGACGATTT
CCAGATGGGTCAGATGGAGACTAAGGTGTTCCCGGCAGTGTTCCCCGACG
ATTTCCAGATAGAGGGTTTGCGGGGCAAGGAGGCGTTAGTGCAGGCGGTG
GTAAAGAGCATCGCCAGGAGGGAGGACAAGCCGCCGGAGACGAGGAGCGA
TGACGAGCTACGAGTCCTGCTGCGCCAGAGGGGGGAGGCGACCATGCAGA
TAGAGGGTTTGCGGGGCAAGGAGGCGTTAGTGCAGGCGGTGGTAAAGAGC
ATCGCCAGGAGGGAGGACAAGCCGCCGGAGACGAGGAGCGATGACGAGCT
ACGAGTCCTGCTGCGCCAGAGGGGGGAGGCGACCATGCAGAACCGGATGG
ACCTAGCGGTGGATGCTGCTGTAAAAAAGACGCTTCTAGCGTCGTGCGAA
GTCGATGCCGACAAGAACCGGATGGACCTAGCGGTGGATGCTGCTGTAAA
AAAGACGCTTCTAGCGTCGTGCGAAGTCGATGCCGACAAGGTGCTGAATG
CGGTATCGTGGGCAAAGTTCGGCGAGAAGTCGACGCTGGAGTTCAAGTGG
AACTGCATCAAAGAGAAGATAGCATCGGAGGAGGGGATAGAGCCCAGGGA
AGTGACAGCGTTGCTCCGGAGGGAAGCTAACGTTGTGCTCTCTTGAGTGC
TGAATGCGGTATCGTGGGCAAAGTTCGGCGAGAAGTCGACGCTGGAGTTC
AAGTGGAACTGCATCAAAGAGAAGATAGCATCGGAGGAGGGGATAGAGCC
CAGGGAAGTGACAGCGTTGCTCCGGAGGGAAGCTAACGTTGTGCTCTCTT
GA
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