mRNA_H-elongata_contig54656.12855.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.290e-17 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 IEIREDNEGAKAMAD-----GQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNLPD 219
I++ EDNEGA A+AD G+ KHIDVR HF+R L G +++ H++S+ QHAD+LTKALP LF+ HR ++ L +
Sbjct: 156 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLSE 233
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 1.680e-16 Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 IEIREDNEGAKAMAD-----GQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNLPD 219
I++ EDNEGA A+AD G+ KHIDVR HF+R L G +++ H++S+ QHAD+LTKALP LF+ HR ++ L +
Sbjct: 602 IKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRELFEVHRNFVLGLSE 679
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5L8G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G9_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 8.810e-16 Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query: 13 EDNEGAKAMAD-----GQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNLPD 219
EDNEGA A+AD G KHIDVR HF+R L G +++ H++S+ QHAD+LTKALP ALF+ +R ++ L +
Sbjct: 148 EDNEGAIALADNPLSSGISKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKALPRALFEVNRDIVLGLSE 221
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 1.810e-14 Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 1 IEIREDNEGAKAM-----ADGQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNLPD 219
I++ EDN+GA A+ + G+ KHIDVR+HFIR L+ SG++ V+ +++ QHAD+LTKAL +A + HR ++NLP+
Sbjct: 802 IQVVEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLIRSGDISVKFVSTTEQHADLLTKALSSASLQYHRRKVINLPE 879
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5JIR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR0_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.760e-14 Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 IEIREDNEGAKAMAD-----GQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNLPD 219
I++ EDN+GA A+ G+ KHIDVR+HFIR+L+ SG++ V+ + + QHAD+LTKAL A + HR LMNL +
Sbjct: 307 IQVLEDNQGAIALVQNPLGSGRTKHIDVRFHFIRRLLRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKLMNLSE 384
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 4.580e-14 Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 IEIREDNEGAKAMADG-----QGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNL 213
I++REDNEGA A+A+ KHIDVR H R L G + + H++SE QHAD+LTKALP F+ HR + L
Sbjct: 584 IQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKALPRGCFEVHRNFALGL 659
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5JKV2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV2_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 1.190e-13 Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 IEIREDNEGAKAMA-----DGQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNL 213
I + ED+EGA +A + KHIDVR HF+R+LV V + H+AS++QHAD LTKALP F HR +MNL
Sbjct: 55 IPLYEDHEGAIQIAIHPISNFNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRDYVMNL 130
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.820e-13 Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 1 IEIREDNEGAKAMADG-----QGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHR 195
I++REDNEGA A+A+ KHIDV HF+R L G + + H++SE QHAD+LTKALP F+ HR
Sbjct: 299 IQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEIRHVSSEVQHADILTKALPRDPFEVHR 368
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5KFD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD2_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.090e-13 Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 IEIREDNEGAKAMA-----DGQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNL 213
I + EDNEGA +A + KHIDVR HF+R+LV V + H+AS++QHAD LTKALP F HR +MNL
Sbjct: 381 IPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREFVSHRDYVMNL 456
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.190e-13 Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 IEIREDNEGA-----KAMADGQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADVLTKALPAALFKRHRAALMNL 213
I + EDNEGA +++ KHIDVR HF+R+LV V V H+AS++QHAD LTKALP F HR +MNL
Sbjct: 636 IPLYEDNEGAIQIEKHPISNSNSKHIDVRHHFLRQLVDEKEVEVIHVASKYQHADFLTKALPEREFVSHRDDVMNL 711 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54656.12855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54656.12855.1 >prot_H-elongata_contig54656.12855.1 ID=prot_H-elongata_contig54656.12855.1|Name=mRNA_H-elongata_contig54656.12855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp IEIREDNEGAKAMADGQGKHIDVRWHFIRKLVASGNVRVEHLASEWQHADback to top mRNA from alignment at H-elongata_contig54656:3649..3876- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54656.12855.1 ID=mRNA_H-elongata_contig54656.12855.1|Name=mRNA_H-elongata_contig54656.12855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig54656:3649..3876- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54656:3649..3876- >mRNA_H-elongata_contig54656.12855.1 ID=mRNA_H-elongata_contig54656.12855.1|Name=mRNA_H-elongata_contig54656.12855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig54656:3649..3876- (Himanthalia elongata Himel1 dioecious)back to top |