mRNA_H-elongata_contig54637.12851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54637.12851.1
Unique NamemRNA_H-elongata_contig54637.12851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: D7G9B2_ECTSI (Magnesium and cobalt transport protein CorA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B2_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 7.630e-52
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 RDHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            RDHLLMLEEQA R++TWSRSLN DWVNEQQHRMNQV+YILTMVTSAFMPAQFL GVFGMNFKFMPEL WRYSYASFWVLVALLA +SYTVYKR KWL
Sbjct:  594 RDHLLMLEEQALRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLTGVFGMNFKFMPELNWRYSYASFWVLVALLAFSSYTVYKRHKWL 690
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A6H5L3P2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P2_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.170e-51
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 RDHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            RDHLLMLEEQA R++TWSRSLN DWVNEQQHRMNQV+YILTMVTSAFMPAQFL GVFGMNFKFMPEL WRYSYASFWVLVALLA +SYTVYKR KWL
Sbjct:  796 RDHLLMLEEQALRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLTGVFGMNFKFMPELNWRYSYASFWVLVALLAFSSYTVYKRHKWL 892
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A835YKG6_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.510e-35
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    4 DHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            DH+++LEEQA R+T WSRSLN D++NEQ HRMN V+Y+LTMVT+AF+P QFL GVFGMNFK+MPEL W+YSY  FW L+  LA   +  Y++ +WL
Sbjct:  650 DHVVVLEEQAYRMTAWSRSLNDDFMNEQTHRMNNVMYLLTMVTTAFLPGQFLTGVFGMNFKYMPELDWKYSYLIFWALIFALATFVFNFYRKNRWL 745
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A0D2VNK3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VNK3_CAPO3)

HSP 1 Score: 116 bits (291), Expect = 2.840e-28
Identity = 51/97 (52.58%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 RDHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            +DH+  L+EQ + +  W++SLN D +NEQQ RMNQV+Y+LTMVT+ F+P QF+ GV+GMNF+ +PEL WRYSY  FW++V +L   +   +KR+ WL
Sbjct:  772 KDHVQTLQEQTNSMMQWAKSLNDDLLNEQQFRMNQVMYMLTMVTTTFVPLQFITGVYGMNFETLPELTWRYSYLVFWIIVLMLLTIALWFFKRRGWL 868
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A835Z9I1_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.920e-28
Identity = 52/78 (66.67%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:    4 DHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVL 237
            DH+++LEEQA R+ +WS SLN D++NEQ H+MN+V+ +LTMVT+A +P QFLAGVFGMNF++MPEL W YSYA FWVL
Sbjct:  581 DHVVVLEEQAMRMASWSASLNEDYLNEQGHKMNKVMTVLTMVTTACLPGQFLAGVFGMNFRYMPELNWHYSYALFWVL 658
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: I2CPD3_NANGC (Magnesium and cobalt transport protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD3_NANGC)

HSP 1 Score: 97.8 bits (242), Expect = 4.410e-22
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    4 DHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            DH+  L+EQ   +  W++SLN +++NEQQ+RMNQVIY+LTMVT+  +PAQFL GVFGMNF++ P L   + +  FWV+ +        +++ ++WL
Sbjct:  288 DHVAALKEQTHSMIGWAKSLNDEYLNEQQYRMNQVIYLLTMVTTLMLPAQFLTGVFGMNFEYFPLLNEPWGFPVFWVMTSSAIGLILYIFRAKRWL 383
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A4D9CQ61_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ61_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.170e-21
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    4 DHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            DH+  L+EQ   +  W++SLN +++NEQQ+RMNQVIY+LTMVT+  +PAQFL GVFGMNF++ P L   + +  FWV+ +        +++ ++WL
Sbjct:  695 DHVAALKEQTHSMIGWAKSLNDEYLNEQQYRMNQVIYLLTMVTTLMLPAQFLTGVFGMNFEYFPLLNEPWGFPVFWVMTSSAIGLILYIFRAKRWL 790
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A7S4C8W9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8W9_9EUGL)

HSP 1 Score: 89.4 bits (220), Expect = 5.690e-19
Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 RDHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            RDH+  + +  + + TW+R+L  D+   QQ  MN+ +Y+LT++T+ F+PA FL G+FGMNF++MP L W Y + +FW ++  + V    + K+  WL
Sbjct:  282 RDHVSTILDYVASMQTWARNLKDDYSYIQQDNMNRTMYVLTLITALFVPANFLTGLFGMNFEYMPWLNWEYGFWAFWGVIVCVNVVIVYLIKKLSWL 378
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BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A1I2B1D9_9BACT (Magnesium transport protein CorA n=1 Tax=Thermophagus xiamenensis TaxID=385682 RepID=A0A1I2B1D9_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 6.250e-19
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 RDHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            +D L  L ++       S  L   + + Q HRMN+V+ +LT+VTS F+P  FLAGV+GMNFKFMPEL W Y Y +   L+ALLA+     +K++KWL
Sbjct:  256 KDQLWQLTDETDLSIHRSEGLTNLFFSYQGHRMNEVMKVLTIVTSLFIPLSFLAGVYGMNFKFMPELDWNYGYPAVLALMALLALGMLLFFKQKKWL 352
[Close]
BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Match: A0A1V4WHP4_9DELT (Magnesium transport protein CorA n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A1V4WHP4_9DELT)

HSP 1 Score: 87.0 bits (214), Expect = 2.880e-18
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    4 DHLLMLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAGVFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL 291
            DH + + E          SL   +++   +RMN+++ +LT++ + FMP  FLAGV+GMNFK+ PEL+WR++Y SFW+ V ++AV     ++R+KWL
Sbjct:  245 DHTVQIIETMETNRDIISSLLDIYLSSTSNRMNEIMKVLTVIATIFMPMTFLAGVYGMNFKYFPELEWRWAYISFWIAVIIIAVLMIFYFRRKKWL 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54637.12851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B2_ECTSI7.630e-5289.69Magnesium and cobalt transport protein CorA n=1 Ta... [more]
A0A6H5L3P2_9PHAE3.170e-5189.69EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YKG6_9STRA4.510e-3562.50Cora-like Mg2+ transporter protein-domain-containi... [more]
A0A0D2VNK3_CAPO32.840e-2852.58Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A835Z9I1_9STRA3.920e-2866.67Cora-like Mg2+ transporter protein-domain-containi... [more]
I2CPD3_NANGC4.410e-2245.83Magnesium and cobalt transport protein (Fragment) ... [more]
A0A4D9CQ61_9STRA1.170e-2145.83Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4C8W9_9EUGL5.690e-1939.18Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A1I2B1D9_9BACT6.250e-1946.39Magnesium transport protein CorA n=1 Tax=Thermopha... [more]
A0A1V4WHP4_9DELT2.880e-1840.63Magnesium transport protein CorA n=3 Tax=Deltaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54637contigH-elongata_contig54637:1646..3575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue3.1e-41
Seed eggNOG ortholog2880.D7G9B2
Preferred nameMGT1
EggNOG free text desc.CorA-like Mg2 transporter protein
EggNOG OGs2R8TN@2759,COG0598@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size294
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54637.12851.1prot_H-elongata_contig54637.12851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54637 1646..3560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.157546-CDS-H-elongata_contig54637:1645..17301622930890.157546-CDS-H-elongata_contig54637:1645..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 1646..1730 -
1691679613.2776318-CDS-H-elongata_contig54637:1645..17301691679613.2776318-CDS-H-elongata_contig54637:1645..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 1646..1730 -
1622930890.1789765-CDS-H-elongata_contig54637:2244..22801622930890.1789765-CDS-H-elongata_contig54637:2244..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 2245..2280 -
1691679613.2877216-CDS-H-elongata_contig54637:2244..22801691679613.2877216-CDS-H-elongata_contig54637:2244..2280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 2245..2280 -
1622930890.2000499-CDS-H-elongata_contig54637:3029..31001622930890.2000499-CDS-H-elongata_contig54637:3029..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 3030..3100 -
1691679613.2964904-CDS-H-elongata_contig54637:3029..31001691679613.2964904-CDS-H-elongata_contig54637:3029..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 3030..3100 -
1622930890.216984-CDS-H-elongata_contig54637:3473..35601622930890.216984-CDS-H-elongata_contig54637:3473..3560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 3474..3560 -
1691679613.3059053-CDS-H-elongata_contig54637:3473..35601691679613.3059053-CDS-H-elongata_contig54637:3473..3560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54637 3474..3560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930890.232065-UTR-H-elongata_contig54637:3560..35751622930890.232065-UTR-H-elongata_contig54637:3560..3575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54637 3561..3575 -
1691679613.3157086-UTR-H-elongata_contig54637:3560..35751691679613.3157086-UTR-H-elongata_contig54637:3560..3575Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54637 3561..3575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54637.12851.1

>prot_H-elongata_contig54637.12851.1 ID=prot_H-elongata_contig54637.12851.1|Name=mRNA_H-elongata_contig54637.12851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MLEEQASRITTWSRSLNTDWVNEQQHRMNQVIYILTMVTSAFMPAQFLAG
VFGMNFKFMPELKWRYSYASFWVLVALLAVTSYTVYKRQKWL*
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mRNA from alignment at H-elongata_contig54637:1646..3575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54637.12851.1 ID=mRNA_H-elongata_contig54637.12851.1|Name=mRNA_H-elongata_contig54637.12851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1930bp|location=Sequence derived from alignment at H-elongata_contig54637:1646..3575- (Himanthalia elongata Himel1 dioecious)
AGAGACCATCTGCTAATGCTGGAGGAACAGGCGTCGAGAATAACCACGTG
GAGCAGAAGCCTCAACACGGACTGGGTCAACGAGCAGCAACATCGCATGA
ATGTCAGCCAGAAAGACAATCACGCGTCGTCGTGGGCGTTTTTCCCCCCT
CTCATCTTGCGTGCGCGGGCTCGTGCGTTTTCCGCGCGATAGTGACGAGT
CTTACCCCCCTTGAGCGGTGAACGGTCTGATCTTTTCGGGAAGGAGTGGA
AACGGCGTGGACGGGGTAATCGATCGACTCAAAATGGTGGTACCGACACA
CGTACTCACCCGCGGTCCTCCTCTTGAATGGTCGCGGAACGGTTGTGCTT
TTCTTTCTTTCGCAGCTCTCGTCGGAATTGTTTTCTTTTGTTTTTCGTTT
TGTTTCTTACCCCCCCCCCCCCCCCCCTTCACGCCTTCCACCCTGACGCA
ACGCCCCTCCAACCTCCCGGCGAAGCAAGTTATATACATCCTCACCATGG
TCACCTCAGCCTTCATGCCGGCGCAGTTCCTGGCTGGCGTGTTCGGGTAA
ATAATAGAAAATACAAAAAAGGGTTTTCACCTCTGAGGTAGACTCCGGAC
GTTCTACAGTTTACGCTAGGCGTCGATGCCTAGCTGTCAGGCTTACGATT
TTTACGGTCCCGGATCAGACCATACATACATACATACATACATACATGTT
ATATTTTAAAGTGGTTTACCCTTGGTCCTGTTCTACATGTACCTTCTCTT
GGCGTTTAATCTTCGACCAGAGCCGTGGCCTTCTGCCTTGATGTTGTTTG
CGTCTGTGTGAATGTATGTATGCGGATTTGTGCGGTTAAAGATGATCGCA
ATACGTTTAGCTGGTTGCCCGCGCGTTTGTGTTCAGCGTCCCTCTGATGC
TTGCTCCGTCCTCTCGCAATCTCGGTTTGAACATTACAAATTACCTTCTT
TCCCTATGCCATTCTTGTGCCGTGCGTACAGTACGCATCGACCCTGGTCT
CCCTGTGCTTTCCCCTATTCGTCCTGTCTGCATTTTGCTTGTTTGAATAT
AATGTTTTATGTTTGGTAGAAGTCCTGTAGGCCCTATATTTCCAACAAAA
TAGCAATTATTGGTAAATTTTATCAGAATAAGGCAATCAGACAGCCAGCT
CGCGCGGTTCGCGATGACGTCGAGAAAGACGCAATTTATTGTGAGAAATC
CAGTGTCGTCATGCACGCTGTACGATCGTGGTTCATCTGCTCCTCCGTCT
CAGATTTTCACTAGCTTCCCGCTTCTGTATGTGTTTGTTCGTCAGGATGA
ATTTCAAGTTTATGCCGGAGCTCAAGTGGAGGTGTGTTTGCGCCCTGGGC
CCTCTATCACATGCTCTATCCATTGAAAAAGCCACGTTATTGCGCGAGTG
GCGTGTTCAAGGTTTTCCGAAGACGGAACATTGTACGGGGGGCGGGGGGG
GGGGAGGGTTGGCGAACTACGCACCTCGCGCTGCCAGTAATAGCTCCATT
CTTTTAGGCTAAGCTTGCTCAATTTTTGTTCACCAAACCAGCCTTTGCTG
CAACACCGTTTCGGGATATTTTCTTTATGCTTTCCCCCATTCGTTTGTGA
AAGAAAAAGAGAGAAGCAAAAACAATCGTCGGTAGTACCTCTACGCTTCG
TCCCCTGCACGAAAGGTGCGCCGCTCTGTGCGTTGTTGACAACGCCTTCC
CTGCGGCAGGCCCGATCTAGTGATTTTTTGGAATCCCGAACGTCTGCAGG
CTGTGTGGCCGCGACCGACTGTTGTTGTCTTTGGTGACCTCCAAATAAAC
GCCTCCCGTACACGTCGTGCGCACCCCCTCACTTCCCATGCGCAGATATT
CTTACGCTTCCTTCTGGGTACTGGTCGCTCTGCTTGCGGTCACGAGCTAC
ACCGTCTACAAGCGTCAAAAGTGGCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig54637:1646..3575-

>mRNA_H-elongata_contig54637.12851.1 ID=mRNA_H-elongata_contig54637.12851.1|Name=mRNA_H-elongata_contig54637.12851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig54637:1646..3575- (Himanthalia elongata Himel1 dioecious)
ATGCTGGAGGAACAGGCGTCGAGAATAACCACGTGGAGCAGAAGCCTCAA
CACGGACTGGGTCAACGAGCAGCAACATCGCATGAATATGCTGGAGGAAC
AGGCGTCGAGAATAACCACGTGGAGCAGAAGCCTCAACACGGACTGGGTC
AACGAGCAGCAACATCGCATGAATCAAGTTATATACATCCTCACCATGGT
CACCTCAGCCTTCATGCCGGCGCAGTTCCTGGCTGGCGTGTTCGGCAAGT
TATATACATCCTCACCATGGTCACCTCAGCCTTCATGCCGGCGCAGTTCC
TGGCTGGCGTGTTCGGGATGAATTTCAAGTTTATGCCGGAGCTCAAGTGG
AGGATGAATTTCAAGTTTATGCCGGAGCTCAAGTGGAGATATTCTTACGC
TTCCTTCTGGGTACTGGTCGCTCTGCTTGCGGTCACGAGCTACACCGTCT
ACAAGCGTCAAAAGTGGCTCTAGATATTCTTACGCTTCCTTCTGGGTACT
GGTCGCTCTGCTTGCGGTCACGAGCTACACCGTCTACAAGCGTCAAAAGT
GGCTCTAG
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