mRNA_H-elongata_contig54610.12849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54610.12849.1
Unique NamemRNA_H-elongata_contig54610.12849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54610.12849.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 7.460e-72
Identity = 169/409 (41.32%), Postives = 230/409 (56.23%), Query Frame = 1 
Query:  205 YFQPFGISISV-CDGITTSSGDEDKDKKPRMQILSALFHLDSTNIMVKS--IYGTLSLITLLGALKNTFDKSNVDILDFVHFHAAYECSFHEGNRFMSFFVRVFAPPSRSSGQLLDEEATIVEKIEGGL-----LVEVQLREGDRLHFSALYREMMTNFMRCQEDVTITGTLRYRPKPSPGKGEGLMIEPSSFPHPSKYGTR---QRFKSTDV------------PESPLSNEPMDEDMVEDVVKLAEMLESGLLDVQADAATAIAGLSGEAEFREQLCHPIAKTAAVTLCRAAARLLVKTEYRPARRQAAVTVANLSSSPELCLLLLDPDPSTTATKRG---------------LVEALVTLAIQQSKDA----KEEEIGTRRECMRALVYIAKSRSANNTVRQVLLL 1305
            +F PFGI+ +    G+++  G+ +    P +  L + F L+ TN++V S  +   LS+ +LL AL+     + VD+LDF   H   ECS+H GNRF+S F+RVF  P R+SGQL D  +      + G      LVE QLREGDRLHFSAL+RE++  FM  QE V + GT RY+P+  P  GEGL +E  +   PS+   R   +R ++T              P+   S+  +D DM++DVV LA+ML    LDVQADAA A+AGL+ + +  EQL    A  AA  +  AAARLLV+T +RPARRQAAV VANL+ +P+L   LL  D                        LVE+LV L++ +   +     EEEIG RRECMRALV +A+SR   +     LLL
Sbjct:  157 FFAPFGIAGNAHSSGLSSYDGELEDSDTPCVATLPSTFRLERTNLVVTSPLMEQLLSVDSLLDALRAALTDAGVDVLDFKPAHCVLECSYHVGNRFLSLFIRVFKAPDRASGQLFDNSSVGNNNNDDGAEQTPYLVEAQLREGDRLHFSALFREILRAFMN-QEGVNLVGTFRYKPRTYPATGEGLALEQVNMA-PSRNSIRLLAERGEATKTGGSLPVPASMARPQVSSSSPELDSDMMDDVVLLADMLSGSYLDVQADAAAAVAGLTTDVKLLEQLSRGAAANAANAIAHAAARLLVETRHRPARRQAAVAVANLTKTPQLRAALLASDXXXXXXXXXXXXXXXXXXXXXXXXLVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVRDMPAMRLLL 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54610.12849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE7.460e-7241.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54610contigH-elongata_contig54610:685..3832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1311
Cds size1311
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54610.12849.1prot_H-elongata_contig54610.12849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54610 685..3832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.9455123-CDS-H-elongata_contig54610:684..9281622930889.9455123-CDS-H-elongata_contig54610:684..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 685..928 +
1691679613.1932569-CDS-H-elongata_contig54610:684..9281691679613.1932569-CDS-H-elongata_contig54610:684..928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 685..928 +
1622930889.9644074-CDS-H-elongata_contig54610:1391..15971622930889.9644074-CDS-H-elongata_contig54610:1391..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 1392..1597 +
1691679613.2036924-CDS-H-elongata_contig54610:1391..15971691679613.2036924-CDS-H-elongata_contig54610:1391..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 1392..1597 +
1622930889.983578-CDS-H-elongata_contig54610:1966..21791622930889.983578-CDS-H-elongata_contig54610:1966..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 1967..2179 +
1691679613.2167132-CDS-H-elongata_contig54610:1966..21791691679613.2167132-CDS-H-elongata_contig54610:1966..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 1967..2179 +
1622930890.0096557-CDS-H-elongata_contig54610:2474..27601622930890.0096557-CDS-H-elongata_contig54610:2474..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 2475..2760 +
1691679613.2279322-CDS-H-elongata_contig54610:2474..27601691679613.2279322-CDS-H-elongata_contig54610:2474..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 2475..2760 +
1622930890.0284367-CDS-H-elongata_contig54610:3470..38321622930890.0284367-CDS-H-elongata_contig54610:3470..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 3471..3832 +
1691679613.236089-CDS-H-elongata_contig54610:3470..38321691679613.236089-CDS-H-elongata_contig54610:3470..3832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54610 3471..3832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54610.12849.1

>prot_H-elongata_contig54610.12849.1 ID=prot_H-elongata_contig54610.12849.1|Name=mRNA_H-elongata_contig54610.12849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=437bp
DEISSNRGGYLAKMKYTMGPSTIHSQPWSVQRSDLAVEKSKLLEPKREQR
IHPILDMGEPIRVTEEEEYFQPFGISISVCDGITTSSGDEDKDKKPRMQI
LSALFHLDSTNIMVKSIYGTLSLITLLGALKNTFDKSNVDILDFVHFHAA
YECSFHEGNRFMSFFVRVFAPPSRSSGQLLDEEATIVEKIEGGLLVEVQL
REGDRLHFSALYREMMTNFMRCQEDVTITGTLRYRPKPSPGKGEGLMIEP
SSFPHPSKYGTRQRFKSTDVPESPLSNEPMDEDMVEDVVKLAEMLESGLL
DVQADAATAIAGLSGEAEFREQLCHPIAKTAAVTLCRAAARLLVKTEYRP
ARRQAAVTVANLSSSPELCLLLLDPDPSTTATKRGLVEALVTLAIQQSKD
AKEEEIGTRRECMRALVYIAKSRSANNTVRQVLLLH*
back to top

mRNA from alignment at H-elongata_contig54610:685..3832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54610.12849.1 ID=mRNA_H-elongata_contig54610.12849.1|Name=mRNA_H-elongata_contig54610.12849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3148bp|location=Sequence derived from alignment at H-elongata_contig54610:685..3832+ (Himanthalia elongata Himel1 dioecious)
GACGAAATATCATCCAACCGCGGTGGCTACCTTGCTAAGATGAAATATAC
GATGGGCCCATCGACGATTCACAGCCAGCCATGGTCTGTCCAAAGGTCCG
ACCTAGCAGTCGAAAAGTCGAAGCTACTCGAACCCAAGCGGGAGCAAAGG
ATCCATCCGATTCTTGATATGGGGGAGCCTATCCGTGTAACTGAAGAGGA
AGAGTACTTCCAACCATTCGGCATTAGCATCTCAGTCTGTGACGGTGCGT
GCTCCTGCTGTTACTCCTGCTGCTGCTGCCACTTAAATCATCCATGTTGT
GTTTCAAGTGAAGCTTATTGTTTGGACTCTGACTGTGGCGGCGCAAAAAA
CCGAATTATTTGGAGTTTTTTTTTTGAAATAATCGATCATGAAATCTGTC
AATCGTCCATATATGGATAATTTTTCACAGAAAAAATTTCGTATTTTTTC
CTTTTTCTGACATTAAGGGCCGTTTTAAACATTAAAAAAAATGTCGAAAA
TTTTGACATTTTTTTAAAAAAACTGCGTCAATTAAAAAAAAAAAAAATCA
TAACGTCAGAAGCAACTCGCTCACACTTTTCGCCTGTGAATTGCTTCCAA
GTTTTTGACATCAAATTGTGACAAACGCCTCGTTTAGTTGAAATGTTTGA
TTTTTCAAATTATTTGACATAAAAAGGGCATATGTTTAAACCGGCCCTAA
ACTACAGGAATAACTACTTCTTCGGGCGATGAAGACAAGGATAAGAAGCC
CAGGATGCAAATCCTCTCGGCCCTCTTCCATTTAGATTCCACAAACATCA
TGGTCAAGTCCATCTACGGAACGCTCTCCTTGATCACGCTTTTGGGCGCC
CTCAAAAATACCTTCGACAAGTCAAACGTGGATATTCTCGACTTCGTCCA
CTTCCACGCTGCGGTAAGGATCCAAGCACCCCCCCCCCACTCGCTACTGT
TTCGATTTTTCCTTCGAATGGGTTAGCGATACAGACCAAGGCCACTGCGA
GATAGGCCTTCGAAATATCAACACCCATCCTAAAGAAGGAAATTCATCCA
CGTGACAGTCCCGAGTGAGGATGTAAAATATTTATATTTTTCTCTTTTTC
GTCTTCCATTGGGAAACCTTCAGGTGTGAAAACCTTGAGGTGTTCACGGC
TAGAGGCGAAAAACTTGCAGGCGATAACCCAAGTCATTTTCTTTTTTATC
AATTTTGCATTAAACCGCGAAAACCGTCAAGACACTTATACAAAAGTTAT
AACTTAAATGTATTTCTTGTCCACTATGGCAGTACGAGTGCTCTTTCCAC
GAAGGAAATCGGTTCATGAGTTTCTTCGTGAGGGTATTCGCGCCACCCTC
TAGGTCATCCGGGCAGCTGCTCGACGAAGAAGCCACTATCGTAGAAAAGA
TCGAGGGTGGGTTGCTGGTGGAAGTCCAGCTGCGGGAGGGTGACCGTCTT
CATTTTTCGGCCCTATACCGTGAAATGATGACGAACTTCATGAGGGTGAG
GTCAAGAACGGGGACACGGAACCTATACTTCTATACCCTTTATCTTTTAC
CGATAGAGTTAATGGTATGCACTTCTAAATTATGTTATTGCAGATTATGC
ACGATGAGAGAAGTGCCGTGGTTTCTGAATTCCGAAAAATTGATCCCGAA
GCTTCGAGTCACGACCGAATGTATAGGCTTATAGGTTACATACCCTAGGT
TACATACCCCAAAGTTAGCTAAACGTTCACGTCCTTTGCCTGTATCCTCC
CTTCTTTGCCTATATCGCTCTCGTTCAACGCGATCGTCAGTGTCAAGAAG
ACGTTACCATAACAGGAACTCTTCGCTACAGGCCTAAACCATCTCCCGGG
AAGGGCGAAGGCCTAATGATCGAACCTTCGAGCTTCCCTCACCCTTCGAA
ATATGGCACACGGCAAAGGTTCAAAAGCACCGACGTCCCGGAGAGTCCTC
TTTCGAACGAGCCGATGGACGAGGACATGGTCGAGGACGTCGTGAAGCTC
GCGGAGATGTTGGAGTCAGGACTCCTTGACGTGCAAGCCGACGCCGCCAC
TGCGATTGCTGGTCTCTCCGGGGAGGGTAAGTAGAGAATCCCCTCCCTCT
CACCCACCTCTAGAGTTTCTTGGAACCGAAACTGTTCTTGAACAAAGGCC
TGTAATATGTCTTGGACGAATGTGAGGATATAGTGGAGGATAGACGAGTC
ACCTTTGTCGGCGGCTGGCTGTCTCTGCGACAGCACTGCCCAAACAAATG
TGCACTGTCTTCCTCCGCCATCCTTCCCAACAAGTAGAGTTGGAGATGAA
CGCTTGTTCTTTTATTGTACTTTGATATATATTCAGGTTTATTAAATGGG
AACAACGACACGGCACATTAAGGCCATGGACTCTGGATGACAAGCCCTCT
TCTGCCCACGTGAAGCCCTTCAATTCATTACATGTTGTTATAGTACTCTT
GTCTTGAGACTGCTTTATCAATCTCTTCGTTGTCGTTTCGTGTGCAGCAG
AGCCCCAGGAACGTCTGTTTTGGTGTAATTTTTATTTCAATTTTAATTAA
TTTAATTTAATTTAATTTCCCTTCTCTTTAATTCCAAATTGCACGCGTAT
TTTCCAAATTGCGGTCATAGCGCTGCATGTACACTCTTTAAACATAAGAG
AGTTCTGGCACACACTCTAGTGGAACCCGTGTGTACCTCTACATAACTGT
GACGCCGGTTCCCCTTGCCGTCTCCCGCTTTCCGCTTGCGTGACGTCACG
TGACGTGTCGTTCATTTTTTGTTTTTCCTTGGGCAGCCGAATTCAGAGAG
CAGTTGTGCCATCCTATCGCCAAAACAGCTGCCGTCACTCTTTGTCGCGC
GGCGGCACGGCTTCTCGTTAAGACGGAGTATCGCCCCGCCAGACGTCAAG
CCGCGGTTACCGTTGCCAACCTCTCCAGCTCTCCGGAATTATGCCTACTT
CTTCTCGACCCCGATCCTTCGACGACGGCTACCAAGCGAGGGCTCGTGGA
AGCTCTCGTGACCCTGGCAATTCAGCAGTCGAAGGACGCCAAGGAAGAGG
AGATTGGGACGAGACGGGAATGCATGCGCGCGCTTGTTTATATTGCTAAA
TCTCGATCCGCCAATAATACGGTGAGACAAGTCTTACTCTTACACTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54610:685..3832+

>mRNA_H-elongata_contig54610.12849.1 ID=mRNA_H-elongata_contig54610.12849.1|Name=mRNA_H-elongata_contig54610.12849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2622bp|location=Sequence derived from alignment at H-elongata_contig54610:685..3832+ (Himanthalia elongata Himel1 dioecious)
GACGAAATATCATCCAACCGCGGTGGCTACCTTGCTAAGATGAAATATAC
GATGGGCCCATCGACGATTCACAGCCAGCCATGGTCTGTCCAAAGGTCCG
ACCTAGCAGTCGAAAAGTCGAAGCTACTCGAACCCAAGCGGGAGCAAAGG
ATCCATCCGATTCTTGATATGGGGGAGCCTATCCGTGTAACTGAAGAGGA
AGAGTACTTCCAACCATTCGGCATTAGCATCTCAGTCTGTGACGGACGAA
ATATCATCCAACCGCGGTGGCTACCTTGCTAAGATGAAATATACGATGGG
CCCATCGACGATTCACAGCCAGCCATGGTCTGTCCAAAGGTCCGACCTAG
CAGTCGAAAAGTCGAAGCTACTCGAACCCAAGCGGGAGCAAAGGATCCAT
CCGATTCTTGATATGGGGGAGCCTATCCGTGTAACTGAAGAGGAAGAGTA
CTTCCAACCATTCGGCATTAGCATCTCAGTCTGTGACGGAATAACTACTT
CTTCGGGCGATGAAGACAAGGATAAGAAGCCCAGGATGCAAATCCTCTCG
GCCCTCTTCCATTTAGATTCCACAAACATCATGGTCAAGTCCATCTACGG
AACGCTCTCCTTGATCACGCTTTTGGGCGCCCTCAAAAATACCTTCGACA
AGTCAAACGTGGATATTCTCGACTTCGTCCACTTCCACGCTGCGGAATAA
CTACTTCTTCGGGCGATGAAGACAAGGATAAGAAGCCCAGGATGCAAATC
CTCTCGGCCCTCTTCCATTTAGATTCCACAAACATCATGGTCAAGTCCAT
CTACGGAACGCTCTCCTTGATCACGCTTTTGGGCGCCCTCAAAAATACCT
TCGACAAGTCAAACGTGGATATTCTCGACTTCGTCCACTTCCACGCTGCG
TACGAGTGCTCTTTCCACGAAGGAAATCGGTTCATGAGTTTCTTCGTGAG
GGTATTCGCGCCACCCTCTAGGTCATCCGGGCAGCTGCTCGACGAAGAAG
CCACTATCGTAGAAAAGATCGAGGGTGGGTTGCTGGTGGAAGTCCAGCTG
CGGGAGGGTGACCGTCTTCATTTTTCGGCCCTATACCGTGAAATGATGAC
GAACTTCATGAGGTACGAGTGCTCTTTCCACGAAGGAAATCGGTTCATGA
GTTTCTTCGTGAGGGTATTCGCGCCACCCTCTAGGTCATCCGGGCAGCTG
CTCGACGAAGAAGCCACTATCGTAGAAAAGATCGAGGGTGGGTTGCTGGT
GGAAGTCCAGCTGCGGGAGGGTGACCGTCTTCATTTTTCGGCCCTATACC
GTGAAATGATGACGAACTTCATGAGGTGTCAAGAAGACGTTACCATAACA
GGAACTCTTCGCTACAGGCCTAAACCATCTCCCGGGAAGGGCGAAGGCCT
AATGATCGAACCTTCGAGCTTCCCTCACCCTTCGAAATATGGCACACGGC
AAAGGTTCAAAAGCACCGACGTCCCGGAGAGTCCTCTTTCGAACGAGCCG
ATGGACGAGGACATGGTCGAGGACGTCGTGAAGCTCGCGGAGATGTTGGA
GTCAGGACTCCTTGACGTGCAAGCCGACGCCGCCACTGCGATTGCTGGTC
TCTCCGGGGAGGTGTCAAGAAGACGTTACCATAACAGGAACTCTTCGCTA
CAGGCCTAAACCATCTCCCGGGAAGGGCGAAGGCCTAATGATCGAACCTT
CGAGCTTCCCTCACCCTTCGAAATATGGCACACGGCAAAGGTTCAAAAGC
ACCGACGTCCCGGAGAGTCCTCTTTCGAACGAGCCGATGGACGAGGACAT
GGTCGAGGACGTCGTGAAGCTCGCGGAGATGTTGGAGTCAGGACTCCTTG
ACGTGCAAGCCGACGCCGCCACTGCGATTGCTGGTCTCTCCGGGGAGGCC
GAATTCAGAGAGCAGTTGTGCCATCCTATCGCCAAAACAGCTGCCGTCAC
TCTTTGTCGCGCGGCGGCACGGCTTCTCGTTAAGACGGAGTATCGCCCCG
CCAGACGTCAAGCCGCGGTTACCGTTGCCAACCTCTCCAGCTCTCCGGAA
TTATGCCTACTTCTTCTCGACCCCGATCCTTCGACGACGGCTACCAAGCG
AGGGCTCGTGGAAGCTCTCGTGACCCTGGCAATTCAGCAGTCGAAGGACG
CCAAGGAAGAGGAGATTGGGACGAGACGGGAATGCATGCGCGCGCTTGTT
TATATTGCTAAATCTCGATCCGCCAATAATACGGTGAGACAAGTCTTACT
CTTACACTAACCGAATTCAGAGAGCAGTTGTGCCATCCTATCGCCAAAAC
AGCTGCCGTCACTCTTTGTCGCGCGGCGGCACGGCTTCTCGTTAAGACGG
AGTATCGCCCCGCCAGACGTCAAGCCGCGGTTACCGTTGCCAACCTCTCC
AGCTCTCCGGAATTATGCCTACTTCTTCTCGACCCCGATCCTTCGACGAC
GGCTACCAAGCGAGGGCTCGTGGAAGCTCTCGTGACCCTGGCAATTCAGC
AGTCGAAGGACGCCAAGGAAGAGGAGATTGGGACGAGACGGGAATGCATG
CGCGCGCTTGTTTATATTGCTAAATCTCGATCCGCCAATAATACGGTGAG
ACAAGTCTTACTCTTACACTAA
back to top