mRNA_H-elongata_contig54600.12846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54600.12846.1
Unique NamemRNA_H-elongata_contig54600.12846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A6H5KVJ9_9PHAE (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVJ9_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.400e-81
Identity = 152/213 (71.36%), Postives = 171/213 (80.28%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADR--VAL------LTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP--GSPYSLPPGAPLSKPVPVFPRIESLEEA 609
            +VPFGNDGDFS+ AFQ R+NSNLANEVGNLAMRTLS+AVKNC G+VP P  A   G + +    AL      LT ED  LL+SAGEC+GVVRPLVGE QQLHKAL+AIL VSR AN+Y+D QAPW LKKT+P+RMKTVLWVLLETIRHV ILYQPFVP++A  LLDQLGVPEG+ARLF AL    G+ +SL PGAPL KPVPVFPRIE  EEA
Sbjct:  393 EVPFGNDGDFSETAFQNRVNSNLANEVGNLAMRTLSMAVKNCGGQVPRPATATDAGDVDEGGDKALGREDFDLTPEDVELLKSAGECIGVVRPLVGETQQLHKALEAILLVSREANRYVDFQAPWKLKKTNPDRMKTVLWVLLETIRHVGILYQPFVPEAAGKLLDQLGVPEGDARLFAALEQEGGARFSLQPGAPLDKPVPVFPRIEVPEEA 605          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A1G6X898_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G6X898_9PROT)

HSP 1 Score: 187 bits (475), Expect = 1.250e-47
Identity = 109/196 (55.61%), Postives = 128/196 (65.31%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
            +VPFGNDGDFS +A   R+N  LAN++GNLA R LS+  KNC G VP P      GP+ D       ED  LL  A   L  VR  + + Q  H+AL+A+  V R AN Y+D QAPWAL+KTDP RM TVLW L ETIRHVA+L QP VP SAA +LDQLGVP  +AR FTAL  G   +L PGAPL KP  +FPR
Sbjct:  332 EVPFGNDGDFSHRAMVNRMNGELANDLGNLAQRVLSMIAKNCGGAVPEP------GPLTD-------EDTALLGQARGLLPAVRAAI-DRQAFHEALEALWVVVRAANAYVDRQAPWALRKTDPARMATVLWALAETIRHVAVLIQPVVPDSAARMLDQLGVPS-DARDFTALGEGG--ALVPGAPLPKPQGIFPR 510          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A286GFJ2_9PROT (Methionine--tRNA ligase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GFJ2_9PROT)

HSP 1 Score: 184 bits (468), Expect = 1.150e-46
Identity = 110/206 (53.40%), Postives = 136/206 (66.02%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRI--ESLEEAK 612
            +VPFGNDGDFS +A   R+N  LAN++GNLA R LS+  KNC  +VP    A+ E         LTA+D  LL +A   +G +RPL+ + Q  H+AL+AI  V R AN Y+D QAPWAL+KTDP+RM TVLWVL+ET+R VAIL QP  P+SAA +LDQL VP  +AR FTAL  G   +L PG  L KP  VFPR   E  +E K
Sbjct:  331 EVPFGNDGDFSHRAMVNRMNGELANDLGNLAQRVLSMVAKNCGAQVP----ARGE---------LTADDRELLDAAWGLIGRLRPLM-DRQAFHEALEAIWVVVRAANAYVDRQAPWALRKTDPDRMATVLWVLMETVRQVAILMQPVTPESAAKMLDQLAVP-ADARAFTALGEGG--ALVPGTDLPKPQGVFPRFVEEENQETK 519          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A2H6AZS4_9BACT (Methionine--tRNA ligase n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AZS4_9BACT)

HSP 1 Score: 181 bits (458), Expect = 2.180e-45
Identity = 103/197 (52.28%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP-GSPYSLPPGAPLSKPVPVFPR 588
            +VPFG DGDF  +A  RRIN +LAN+ GNLA R LSL  ++CEGR+P P G             L ++DE LL  A   L   R  + E Q LH+AL+AI +V   AN+Y+D  APW L+KTDP RM+TVLW L ET+RH+A L QPFVP+++A LLDQLGVP  + R F AL P G+P    PG PL  P P+FPR
Sbjct:  327 EVPFGQDGDFRHEAMVRRINHDLANDYGNLAQRVLSLIARHCEGRMPEPEG-------------LCSDDEALLALAYALLPRTRAAMRE-QALHRALEAIFEVIGEANRYVDTMAPWVLRKTDPTRMRTVLWTLAETLRHIATLTQPFVPRASARLLDQLGVPP-QRRDFAALGPDGTPVV--PGTPLPPPEPIFPR 506          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: B7G4V2_PHATC (Methionine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4V2_PHATC)

HSP 1 Score: 180 bits (457), Expect = 8.850e-45
Identity = 106/198 (53.54%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIE 594
            +V FGNDGDFSD+A  ++ N+NLANE+GNL  RTLSL  KNCE  VP PVGA             T EDE LL SA      V   + + Q + K + A++++   ANKYID  APWALKKTDPERM TVL+VLLE +R+ AILYQP +P+SA  +LDQL VP  E R F  L+    YS+  GA +SKPV +FPRIE
Sbjct:  384 EVNFGNDGDFSDRAMIQKCNTNLANELGNLCQRTLSLVFKNCEKAVPNPVGA------------YTPEDEALLESARNLRNKVATEISQ-QSILKYVHAMVEMIWEANKYIDEMAPWALKKTDPERMATVLYVLLEVLRYSAILYQPLIPESAGKILDQLTVPANE-RTFLHLS--EEYSIKAGAAISKPVGIFPRIE 565          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7S2LM79_9STRA (Methionine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LM79_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.910e-44
Identity = 106/205 (51.71%), Postives = 132/205 (64.39%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEAKV 615
            +V FG+DGDFSD+   +++NSNLANE+GNLA RTLS+  KNC   VP  +G+             TAEDE LL  A E   V    +   Q ++K  DA + +  +ANKY+D  APWALKKTDPERM TVL+VL+ET+RHVAI+YQP +P S+  +LDQL VP  E R F  L   SP     GAP+SKPV VFPRIE  E  +V
Sbjct:  397 EVTFGSDGDFSDEKMVQKVNSNLANELGNLAQRTLSMVFKNCGKAVPAEIGS------------YTAEDEALLAKAKELREVASTAIAN-QAINKYADACISLVWDANKYVDDMAPWALKKTDPERMTTVLYVLMETLRHVAIMYQPLMPASSNAVLDQLTVP-AEERTFGHLDT-SPIKF--GAPISKPVGVFPRIEMEEPVQV 584          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7W6RY56_9PROT (Methionine--tRNA ligase n=1 Tax=Roseospira goensis TaxID=391922 RepID=A0A7W6RY56_9PROT)

HSP 1 Score: 178 bits (451), Expect = 2.170e-44
Identity = 107/196 (54.59%), Postives = 129/196 (65.82%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
            +VPFGNDGDFS +A   R+N +LAN++GNLA R LS+  KNC G VP P      GP+ +   +L A+  GLL         VR  V + Q  H+AL+A+  V R AN Y+D QAPWAL+KTDP RM TVL+VL ETIRHVAIL QP VP SAA +LDQLGV   +AR F AL  G   +L PG+PL KP  VFPR
Sbjct:  332 EVPFGNDGDFSHRAMVGRMNGDLANDLGNLAQRVLSMIAKNCGGSVPTP------GPLTEDDTVLLAQAYGLLPQ-------VRAAV-DRQAFHEALEAVWVVVRAANAYVDRQAPWALRKTDPGRMATVLYVLAETIRHVAILVQPVVPDSAARMLDQLGV-AADARGFEALGEGG--ALTPGSPLPKPQGVFPR 510          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A192IJN7_9HYPH (Methionine--tRNA ligase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IJN7_9HYPH)

HSP 1 Score: 177 bits (448), Expect = 5.900e-44
Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEAK 612
            +VPFGNDGDFS  A   RIN +LAN++GNL  R LS+  KNC+G+VP P      GP+ D        D  LL+ A   +G VR  + ++Q LHKAL  I  V  +AN+Y+DAQAPW L+K+DP RM+TVL+VL ET+R +AIL QP  P++ A +LD LG+   EAR F +L  G    L PG P+ KP P+FPR ++ E A+
Sbjct:  336 EVPFGNDGDFSHAAMVHRINGDLANDLGNLCQRVLSMVHKNCDGQVPEP------GPLTDA-------DAALLQKADTAIGRVREQM-DVQALHKALAEIWTVVGDANRYVDAQAPWVLRKSDPARMRTVLYVLAETVRQIAILVQPVTPRAGAAMLDLLGIAP-EARGFDSL--GDAARLAPGTPVDKPAPIFPRYQAEEAAE 522          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A8TUQ9_9PROT (Methionine--tRNA ligase n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TUQ9_9PROT)

HSP 1 Score: 176 bits (447), Expect = 7.090e-44
Identity = 108/203 (53.20%), Postives = 126/203 (62.07%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEA 609
            ++PFGNDGDFS +A   R+NS LAN++GNL+ R LS+  KNC G VP P GA A            A DE LL +A   L   R    + Q  HKALDAI  V   AN+Y+D QAPW L+KTDP RM TVL+ L+ETIRHVAIL QP VP S   +LDQL VP  +AR F  L P   Y L PG PL KP  VFPR  + EEA
Sbjct:  328 ELPFGNDGDFSHRAMINRMNSELANDLGNLSQRVLSMVAKNCAGAVPQP-GAFA------------AADEALLGAADALLESQRAAY-DTQAFHKALDAIFDVVGRANRYVDEQAPWTLRKTDPARMATVLYTLVETIRHVAILLQPIVPGSCERMLDQLAVP-ADARDFDRLTPD--YRLVPGTPLPKPEGVFPRWVAEEEA 513          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7V2RUM3_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2RUM3_9PROT)

HSP 1 Score: 175 bits (444), Expect = 1.090e-43
Identity = 100/196 (51.02%), Postives = 126/196 (64.29%), Query Frame = 1
Query:    1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
            +VPFG DGDF  +A  RRIN +LAN+ GNLA R LS+  +NCEGRVP P      GP+A       A DE LL  A   L  +R  +  +Q LH+AL+ + ++   AN+Y+DAQAPWAL+K+DP RM+TVLW L ETIRH+A+L  PF+P++A  LLDQL V E E R  T    G P  L PG  L +P  VFPR
Sbjct:  305 EVPFGQDGDFRHEAMVRRINHDLANDYGNLAQRVLSMIARNCEGRVPQP------GPLA-------AADEALLARAHALLPAMREAMA-VQALHRALELVWELVGEANRYVDAQAPWALRKSDPARMRTVLWTLAETIRHIALLTLPFLPRAAGRLLDQLAVAEEERRFATLGPKGRP--LVPGTVLPRPQGVFPR 484          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ9_9PHAE1.400e-8171.36Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1G6X898_9PROT1.250e-4755.61Methionine--tRNA ligase n=1 Tax=Rhodospira trueper... [more]
A0A286GFJ2_9PROT1.150e-4653.40Methionine--tRNA ligase n=1 Tax=Caenispirillum bis... [more]
A0A2H6AZS4_9BACT2.180e-4552.28Methionine--tRNA ligase n=1 Tax=bacterium HR40 Tax... [more]
B7G4V2_PHATC8.850e-4553.54Methionine--tRNA ligase n=1 Tax=Phaeodactylum tric... [more]
A0A7S2LM79_9STRA1.910e-4451.71Methionine--tRNA ligase n=1 Tax=Leptocylindrus dan... [more]
A0A7W6RY56_9PROT2.170e-4454.59Methionine--tRNA ligase n=1 Tax=Roseospira goensis... [more]
A0A192IJN7_9HYPH5.900e-4449.02Methionine--tRNA ligase n=2 Tax=Alphaproteobacteri... [more]
A8TUQ9_9PROT7.090e-4453.20Methionine--tRNA ligase n=1 Tax=alpha proteobacter... [more]
A0A7V2RUM3_9PROT1.090e-4351.02Methionine--tRNA ligase n=1 Tax=Rhodospirillales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54600contigH-elongata_contig54600:264..3515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2850.Phatr29029
Preferred nameMSM1
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XB0G@2836,COG0143@1,KOG0436@2759
EC6.1.1.10
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethionyl-tRNA synthetase
Ec32 orthologEc-16_002540.1
Exons3
Model size2423
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54600.12846.1prot_H-elongata_contig54600.12846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54600 2069..3422 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.5893872-UTR-H-elongata_contig54600:263..20681622930889.5893872-UTR-H-elongata_contig54600:263..2068Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54600 264..2068 -
1691679613.0814087-UTR-H-elongata_contig54600:263..20681691679613.0814087-UTR-H-elongata_contig54600:263..2068Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54600 264..2068 -
1622930889.6845276-UTR-H-elongata_contig54600:3422..35151622930889.6845276-UTR-H-elongata_contig54600:3422..3515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54600 3423..3515 -
1691679613.1290777-UTR-H-elongata_contig54600:3422..35151691679613.1290777-UTR-H-elongata_contig54600:3422..3515Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54600 3423..3515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930889.6182222-CDS-H-elongata_contig54600:2068..22841622930889.6182222-CDS-H-elongata_contig54600:2068..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 2069..2284 -
1691679613.0969236-CDS-H-elongata_contig54600:2068..22841691679613.0969236-CDS-H-elongata_contig54600:2068..2284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 2069..2284 -
1622930889.6392238-CDS-H-elongata_contig54600:2591..26871622930889.6392238-CDS-H-elongata_contig54600:2591..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 2592..2687 -
1691679613.1067765-CDS-H-elongata_contig54600:2591..26871691679613.1067765-CDS-H-elongata_contig54600:2591..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 2592..2687 -
1622930889.6627722-CDS-H-elongata_contig54600:3209..34221622930889.6627722-CDS-H-elongata_contig54600:3209..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 3210..3422 -
1691679613.116444-CDS-H-elongata_contig54600:3209..34221691679613.116444-CDS-H-elongata_contig54600:3209..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54600 3210..3422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54600.12846.1

>prot_H-elongata_contig54600.12846.1 ID=prot_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLG
VVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVL
WVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSL
PPGAPLSKPVPVFPRIESLEEAKV*
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mRNA from alignment at H-elongata_contig54600:264..3515-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54600.12846.1 ID=mRNA_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3252bp|location=Sequence derived from alignment at H-elongata_contig54600:264..3515- (Himanthalia elongata Himel1 dioecious)
CAGGTACCCTTCGGGAACGACGGTGACTTCTCGGACAAGGCCTTTCAGAG ACGCATCAACAGCAACCTCGCCAACGAGGTCGGGAATCTCGCCATGCGCA CGCTATCTTTGGCAGTCAAGAACTGCGAAGGGCGGGTACCGCTCCCGGTC GGCGCGAAGGCGGAGGGGCCGATCGCGGACCGCGTAGCCTTGTTAACCGC GGAGGACGAGGGGTTGTTGAGGTCGGCGGGGGAATGCTTGGGGGTGGTGA GGCCGCTTGTCGGGGAGATGCAGCAGCTGCACAAGGCGTTAGACGCTATC TTGCAGGTGAGTCGTGGAGGAACGTGGTGGGCGGTAGTGGAAGGTTATGG TGGGCAAGGAAGTGGACCGTTAATGCGATGGGGCGGCGTCGGCACGCATC CTAGCGGTCGTCTGTTGCTGCTGCTGCTGCAACTATTGGCAGGTCGGCGC ATCCAAGACCACGCGGGGTGTATCGTACGCTGCCGACGAGGCGTCCCGAG GACTGAACGGTGGATTCAACGTCACTCGCTGACGAGGCAGCAAATATCTC CCCTCCCCGCCCACGTCGCCCCCGACCCCTAAAAACACCGTGTACTGTGT GCGAAACAGATTCATAGCGTTGATTCAATCTAGATCGAGAAATACAACAT CGAAGTAGATATTATGGCCTAACAGCGTGCGCGCAGTGTTCTTCCCCTGG ACCTGTCTCAACCTTGCTTCGCATCACGCCCCTGCCCCTTCACACTGTCA CATTCATTTTCAATTTCGCATCTTTATATCTCGCCCCCCGTCGCCATCGT GGGAAACTTTTATCTGATCGACCGTCAGGTGTCTAGGAACGCCAACAAAT ACATCGACGCCCAAGCGCCGTGGGCTTTAAAAAAGACTGATCCGGAAAGG ATGAAAACCGTGTTGTGGGTGCTGGTGAGTTGGGTCGATTTATCTGAGTA ATGTGTGCCGCGAACGGACGACCATCGCTATTCGAGCGTTGATCTACCCA ACCAATATCAAGTGTCCCGCGATACCGAAGGCACATATGGTTCGCTCTGC AGTCTGCAGCAGCCATCATTAGGTTCACTTCAACCGCCTCCATCCTGCAC AATGTGCTAAGAGTAGCGCCATATTTTACCCCCTCCCACACCCACTACGA TAACGCCACCGTAACTTGAACAACAACCACATCCATCCTCGGCCTCGTGT CCGTTTCCTTTGTGTGAACGTCACGCCACAGCTGGAAACCATCCGACATG TGGCTATCTTGTACCAACCGTTCGTCCCGAAGTCCGCGGCGTGCCTTTTG GATCAGCTAGGAGTTCCAGAAGGAGAAGCACGATTGTTCACCGCTCTCGC GCCAGGGTCGCCATATTCTCTTCCGCCGGGTGCTCCCCTAAGCAAGCCCG TCCCAGTTTTCCCCCGTATCGAATCCCTCGAAGAAGCTAAGGTGTAGATA GAAATGCGCCCCGCGCTTAGTCCTTGGAGTGTCGTTTGAGTTTGTGATGG CTTTGGTGAGAACGGTCCGGAAGCGGGTCTTAAGATATCTTATCCGTGTT TCAAAGTTATGCTTAATTCACCGTGCATGAAGGCCGGCATCACATGCGGT CTTTTTCGCGTACATGTGTCGCGGATTAGATACTGTACCTTTTTAAGAGG CCTTAAGAGACAGTTAGTTCGTTTGAGTAGTTGTGCCAGTTTCACTCTCA TCATGCGGGAGGTTGAGCTCTTTGGGTTACAGGCTTGTCCGCCATTTGCT CAGCGCCAATGTCACGTCAGGTCACCTCGCGGACTAGACATCCGGCATCA GTAGGTTTCTCTAGCGATGCAATAAATTGAGCTCGTTGGGTTATAAGCTT GGGCTAGCTTAAGTGGACACGGCGGTTGATCGCTTCAATGGTTTTAGTTT GGCTGCAGAAAATAAGGCGGAGAGAGAGCTAATCCGCGGTACTAGGACTC GGTTTGTTTTTTATTATGAGTTAGAGATAGACAAGTAACGATTCACCGTT ATCATTACAGCCGAGGGGGAAGCAATTGTAGGGAAATACATTCGTCTCTG TACTGTCATTTTATTTTATTTTATTTTTTATCTCGCTCCCTGTGTTTGTG TCGATTTGAGCTCCGCAAATTTATTTTCCCGCATACACCTCTCGTATTGT ACTTTTGAAACATTCGAGGCCATACATTTTGAAATCCATGATTTTGAAAC AGCGACGAGCTAGTTCAGATTGCTCAAGAAGCTATGTAACCCGCTCTCAT CGGAAGAGAAGGATGTTCGACTTTTTTCGAAAATATTTTGAAAATACGGT TGAAAGTGGCCCCACTATTTAGGCCAAAAAATACCCCAGCAGCAACAGCA ACAGCAGCAGAGGTTGAAAGGGCAAGGAAAGTATTGTATGCACTCACAGG GGTGCTTCACGCCATGTACCGATTGGAAGAGTGCGTTCTTGAGCTGTGAG TGACCGCCAAGTCATGACGTTCGCTATGAAATGCGTGTTGTGCCATGAAA GGAGATGTCCTTGATGAGTACAGTAATTCATCGCTGCTGGAAATAATATG GGCTTTTATGGGTTTGTGGCTGGACCAGCTATCATCGTGGGTATGTACGC CGTGTGTTTTTTGTCCCTCATCCCCTTCGAAACCTGGTACTTGTACTGTA TTGGGGTATGAACTTCGAGGGGTCGTCCTGGCGGGTGTAAGGCTGGACTC GTCCTCAAGAGGCGATACCAACGCATTTCAAACCGGTTGGTTGACAAGCG CGGTTGCGTTTTGCTTGGGTCAGGATGGTGTGCACAACATGCACAGGCGC AGCAAATTTGCTGCCACTCGTGTGGTGGTCGACAAGGAGGCAAGGGACAG ACAGCGATCTCTATATCCTGAATTTTCATGTGGAACCACAAGCAGCACTT CAGGCAGTAGGCGCTGTAGTTATGTATACTATATTGTAGACACTGTATAC TATATTGTAGATAGTTCGTACGTACCGACGCAAGTAGACTTTTAGCTGCT TCCGGGTGGTTGTACCTGACGGAGTTTTGTGGTGATTTCGGATCCGTGGT GGTGCGCGTAGTGGAGTGTCACCAAAATGACCACAAACCGTTAACCTTTG ACTGGCAACAGCGGATAGTAAATACTTGTAGTTGGTATGATTGAGAAACG TCGTCTACACTTGGCACATTTATTTATTTTATTTTACAGTAGTAGTATTT TTTCGTTCACCGTGCTAGGTTGTCACCAGCCCCATTTATTGCAAAGCTAT AC
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Coding sequence (CDS) from alignment at H-elongata_contig54600:264..3515-

>mRNA_H-elongata_contig54600.12846.1 ID=mRNA_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig54600:264..3515- (Himanthalia elongata Himel1 dioecious)
ATGCGCACGCTATCTTTGGCAGTCAAGAACTGCGAAGGGCGGGTACCGCT
CCCGGTCGGCGCGAAGGCGGAGGGGCCGATCGCGGACCGCGTAGCCTTGT
TAACCGCGGAGGACGAGGGGTTGTTGAGGTCGGCGGGGGAATGCTTGGGG
GTGGTGAGGCCGCTTGTCGGGGAGATGCAGCAGCTGCACAAGGCGTTAGA
CGCTATCTTGCAGATGCGCACGCTATCTTTGGCAGTCAAGAACTGCGAAG
GGCGGGTACCGCTCCCGGTCGGCGCGAAGGCGGAGGGGCCGATCGCGGAC
CGCGTAGCCTTGTTAACCGCGGAGGACGAGGGGTTGTTGAGGTCGGCGGG
GGAATGCTTGGGGGTGGTGAGGCCGCTTGTCGGGGAGATGCAGCAGCTGC
ACAAGGCGTTAGACGCTATCTTGCAGGTGTCTAGGAACGCCAACAAATAC
ATCGACGCCCAAGCGCCGTGGGCTTTAAAAAAGACTGATCCGGAAAGGAT
GAAAACCGTGTTGTGGGTGCTGGTGTCTAGGAACGCCAACAAATACATCG
ACGCCCAAGCGCCGTGGGCTTTAAAAAAGACTGATCCGGAAAGGATGAAA
ACCGTGTTGTGGGTGCTGCTGGAAACCATCCGACATGTGGCTATCTTGTA
CCAACCGTTCGTCCCGAAGTCCGCGGCGTGCCTTTTGGATCAGCTAGGAG
TTCCAGAAGGAGAAGCACGATTGTTCACCGCTCTCGCGCCAGGGTCGCCA
TATTCTCTTCCGCCGGGTGCTCCCCTAAGCAAGCCCGTCCCAGTTTTCCC
CCGTATCGAATCCCTCGAAGAAGCTAAGGTGTAGCTGGAAACCATCCGAC
ATGTGGCTATCTTGTACCAACCGTTCGTCCCGAAGTCCGCGGCGTGCCTT
TTGGATCAGCTAGGAGTTCCAGAAGGAGAAGCACGATTGTTCACCGCTCT
CGCGCCAGGGTCGCCATATTCTCTTCCGCCGGGTGCTCCCCTAAGCAAGC
CCGTCCCAGTTTTCCCCCGTATCGAATCCCTCGAAGAAGCTAAGGTGTAG
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