mRNA_H-elongata_contig5459.12844.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A6H5K2I2_9PHAE (DUF305 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2I2_9PHAE) HSP 1 Score: 448 bits (1153), Expect = 9.310e-157 Identity = 221/298 (74.16%), Postives = 254/298 (85.23%), Query Frame = 1
Query: 1 RGETYVFNQNNSTNWYHPLGFAYEPDGAHAGVDELEEGVGNAGDAPVYVINGELSDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTEIFYFCHIHDEMSARINIVDAEGDEPADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNTVGFMHQMIPHHENAVNMARVLLKYPGDEELDEEVSAMLREIINSQNAQITYMRSYLEEQGIDVVASECANNSAN--NDVPGYAIGIIAVLAVLCLVFFATLVVK 888
RGETY F+Q ++NWYHPLGFAY PDGAHAGVDELEEG+G+ GDAPVYVI+G LSDLDTYEP+FF+PEE WLE NYTV LTVTDPDVTEIFYFCHIH+ MS RI IVDAEGD PAD EIELY+PL +EFD +CG+FGS+ YAP DGTF+SE+CP+QKF CGD +SSFDRCMHAIDCKMN EMRIEKA +SNTV FMHQMIPHHENAVNMARVLLK PGDE LDEEV+A+LR+IIN+QN QIT+MR +L + G ++VA EC N + NDVPG+AIG+IAVL VLCL A +V+K
Sbjct: 3 RGETYEFSQLEASNWYHPLGFAYYPDGAHAGVDELEEGIGS-GDAPVYVIDGALSDLDTYEPQFFFPEETWLETNYTVELTVTDPDVTEIFYFCHIHNGMSGRIYIVDAEGDTPADAEIELYDPLEFDEFDEECGTFGSADYAPVDGTFDSELCPNQKFLCGDVDSSFDRCMHAIDCKMNYEMRIEKAVATSNTVAFMHQMIPHHENAVNMARVLLKNPGDEGLDEEVAAILRDIINTQNYQITFMRGFLTDNGAELVAEECENEDVDGDNDVPGWAIGVIAVLGVLCLSLLAAVVLK 299
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: D7FP23_ECTSI (DUF305 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP23_ECTSI) HSP 1 Score: 444 bits (1142), Expect = 1.260e-149 Identity = 216/299 (72.24%), Postives = 254/299 (84.95%), Query Frame = 1
Query: 1 RGETYVFNQNNSTNWYHPLGFAYEPDGAHAGVDELEEGVGNAGDAPVYVINGELSDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTEIFYFCHIHDEMSARINIVDAEGDEPADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNTVGFMHQMIPHHENAVNMARVLLKYPGDEELDEEVSAMLREIINSQNAQITYMRSYLEEQGIDVVASECANNSAN---NDVPGYAIGIIAVLAVLCLVFFATLVVK 888
RGETY F+Q ++NWYHPLGFAY PDGAH GVDELEEG+G+ GDAPVYVI+G LSDLDTYEP+FF+PEE W+E NYTV LTVTDPDVTEIFYFCHIH+ MS RI+IVDAEGD PAD EIELYEPL +EFD +CG+FGS+ YAP DGTF+SE+CP+QKF CGD +SSFDRCMHAIDCKMN EMR+EK +SNTV FMHQMIPHHENAVNMAR+LLK PGDEELDEEV+A+LR+IIN+QN QIT+MR +L + G ++VA EC N+ + +DVPG+AIG++A L VLCL A +VVK
Sbjct: 12 RGETYEFSQLEASNWYHPLGFAYYPDGAHEGVDELEEGIGS-GDAPVYVIDGGLSDLDTYEPQFFFPEETWMETNYTVELTVTDPDVTEIFYFCHIHNGMSGRIHIVDAEGDTPADTEIELYEPLEFDEFDEECGTFGSADYAPADGTFDSELCPNQKFLCGDVDSSFDRCMHAIDCKMNYEMRVEKEVATSNTVAFMHQMIPHHENAVNMARILLKNPGDEELDEEVAAILRDIINTQNFQITFMRGFLTDNGAELVAEECENDDMDGDSDDVPGWAIGVMAALGVLCLSLLAAVVVK 309
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A0L0GD09_9EUKA (DUF305 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GD09_9EUKA) HSP 1 Score: 274 bits (701), Expect = 4.410e-87 Identity = 141/257 (54.86%), Postives = 184/257 (71.60%), Query Frame = 1
Query: 1 RGETYVFNQNNSTNWYHPLGFAYEPDGAHAGVDELEEGVGNAGDAPVYVINGELSDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTEIFYFCHIHDEMSARINIVDAEGDEPADPEIE-LYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNT-VGFMHQMIPHHENAVNMARVLLKYPGDEELDE-EVSAMLREIINSQNAQITYMRSYLEEQG 762
RGETY F Q + +NWYHPLGFAY DGAH GVDELEEG+ GD PVY+IN ELS+LD YEPEF +P E W NYTV LT+ DP++T+ FYFCH+H++MSARI +VD EGD+P + E++ LY + FD CG+ ++ ++ G + E C F CGD + F +C++AIDCKMN EM +E Y +N+ V FMHQMIPHH NAVNMA++LLK ++ +D+ +V MLR++IN+QNAQIT+MR YL E G
Sbjct: 55 RGETYTFVQKDISNWYHPLGFAYFADGAHEGVDELEEGL-RGGDYPVYMINNELSELDIYEPEFTFPLEFWETNNYTVELTINDPNLTDFFYFCHVHNKMSARIVVVDNEGDQPTEAELQPLYAFTNQSGFDSMCGTTDAAQFSAQSGGID-EYCDGSVFLCGDQDDKFVQCINAIDCKMNYEMTVEN--YGNNSIVTFMHQMIPHHVNAVNMAKILLKEILEDNVDDPDVEVMLRDVINTQNAQITFMRGYLTELG 307
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7R9SV77_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV77_9CHLO) HSP 1 Score: 220 bits (561), Expect = 1.900e-66 Identity = 127/268 (47.39%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHAGVDELEEGVGNAGDAPVYVING--ELSDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTEIFYFCHIHDEMSARINIVDAEGDEPADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNT-VGFMHQMIPHHENAVNMARVLLKYPGDEELDE---EVSAMLREIINSQNAQITYMRSYLEEQGIDVV-ASEC 786
GETY F QN+ +NWYHPLGFAY PDGAH E+E G G+ Y+ING LD YEP F W +Y +NLT+ DP+ TEIFYFCHIH++MS RI I +A +EP P+ ELY P V + FD CG+F + + + + CP+ F CG ++ F +CM AIDCKMN EMR+ + N V F+HQMIPHH NAVNMA++LLK +E ++ E+ ML I+N QN QITYMR +L + AS C
Sbjct: 59 GETYTFIQNDVSNWYHPLGFAYYPDGAHEDQPEVENDDGT-GNVLTYLINGIEPPLGLDDYEPAFAVARADWKMHSYEINLTINDPNTTEIFYFCHIHNKMSGRIRINNA--NEPYVPK-ELYAPYVPDSFDATCGTFETHNFDLNSENY----CPNSTFLCGAEDNQFSKCMQAIDCKMNYEMRV--TNFEPNPIVTFIHQMIPHHVNAVNMAKILLKTTDMDETNDDELEMKEMLLSIVNGQNEQITYMRKWLNDHNYTTSEASRC 316
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S1I2T7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I2T7_9EUGL) HSP 1 Score: 194 bits (493), Expect = 2.550e-56 Identity = 113/282 (40.07%), Postives = 159/282 (56.38%), Query Frame = 1
Query: 13 YVFNQNNSTNWYHPLGFAYEPDGAHA------GVDELEEGVGNAGDAPVYVINGELSDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVT-EIFYFCHIHDEMSARINIVDAEGDEPADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQK--FFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNTVGFMHQMIPHHENAVNMARVLLKYP----------GDEELDEEVSAMLREIINSQNAQITYMRSYLEEQGIDVVASECANNSA 801
YVF+QN+ TNW HPLG A++PDGAH G E+ +G G G VY ++G L+ YE FF+P+ W + +Y + +++ DP++ EI YFCHIH++MS I+I GD I +Y P + FD CG++G+ Y+ E C ++ F CG +S F +CM AIDCKMN EM ++ +S FMHQMIPHH NAVNMAR+LLK G+E + V ML EI+N+QN Q++ MR +L + +C +A
Sbjct: 31 YVFDQNDITNWMHPLGLAFKPDGAHDVSYGPDGAPEVVDGAGAKGYTYVYKVDGSNVTLEDYERMFFWPKAEWSKHSYHIEVSIVDPNIAKEIVYFCHIHNKMSGLIHIQGGVGDT-----ITMYAPYEPDAFDATCGTYGAGPYSK--RVSEGGRCMHEQATFMCGAVDSQFAKCMDAIDCKMNHEMSVQNIP-ASPVATFMHQMIPHHVNAVNMARILLKQSKAYGGSIDMAGEEGKYDGVQDMLIEIVNTQNYQMSEMRKWLLLRNFSTTGVQCNTTAA 304
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S3PVF0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVF0_9STRA) HSP 1 Score: 194 bits (494), Expect = 5.360e-56 Identity = 121/274 (44.16%), Postives = 170/274 (62.04%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHA---GVDELEEGVGNAGDAPVYVINGEL--------SDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTE------IFYFCHIHDEMSARINIVDAEGDEPAD--PEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEKATYSSNTVG-FMHQMIPHHENAVNMARVLLKYPGDE-ELDEEVSAMLREIINSQNAQITYMRSYLEEQG 762
G+T F+Q ++TNWYH +GFAYEPDGAH G DE E V AG+ Y I+G++ + LD YEPEFFYP W+ + Y+ LT+T PDV I+YFCHIH +MS +I I + +G + ++ E+ELYEP V + FD +CG+ S YA DG ++E D FF G ++ F++C++A+DC+M+ EM E S+ V FM QMIPHH NAVNMA++LLK E + +++ +L +IIN+QN QI R+YL +G
Sbjct: 67 GQTLTFDQTDATNWYHAVGFAYEPDGAHGDDWGADENPE-VEGAGELQ-YKIDGQIPTCDDAGDTGLDCYEPEFFYPRGDWMGKVYSAELTIT-PDVAAASKGGVIYYFCHIHSKMSGKIVIKNGDGTDYSNGSDELELYEPTVNDAFDANCGTSDVSEYA--DGA-KNECSID--FFAGMKDTDFEKCLYAVDCQMHYEMYSETTANESDKVALFMQQMIPHHVNAVNMAKLLLKQAKAEVDAVDDLEDILHDIINTQNFQIHQFRNYLGGEG 332
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S0E333_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E333_9EUKA) HSP 1 Score: 192 bits (487), Expect = 1.900e-55 Identity = 119/274 (43.43%), Postives = 152/274 (55.47%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHA---GVDELEEGVGNAGDAPVYVINGELSD--------LDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTE-----IFYFCHIHDEMSARI--NIVDAEGDEPA--DPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGD--PNSSFDRCMHAIDCKMNVEMRIEKAT-YSSNTVGFMHQMIPHHENAVNMARVLLKYPGDE-ELDEEVSAMLREIINSQNAQITYMRSYLE 753
G+TY F+Q++ TNWYHP+GFAYEPDGAH G DEL+E G +Y ING + LD YEPEFFYP + W+ YT LT+T I+YFCHIH +MS +I N VD EP E+ELY P+VR D CG+ G + Y T+ M F CGD N F +C+ +DC MN M E ++S V FM QMIPHH NAVNMA++LLK D + + +L +I+N QN Q+ R+YLE
Sbjct: 33 GQTYTFDQSDPTNWYHPVGFAYEPDGAHGSTWGGDELDEVEGKG--ELLYKINGAATTCDDAGDTGLDCYEPEFFYPRDVWIGATYTAELTITQAVADRSHGGVIYYFCHIHSKMSGKIVINTVDGTRFEPTLNPTELELYSPVVRSAIDATCGTTGVAQY-----TYGQSMACSGSFLCGDLDTNPRFGQCLQGVDCAMNKGMFGESTPDHASPVVTFMEQMIPHHLNAVNMAKLLLKTDLDSVAATDGLEDILWDIVNVQNYQVHQFRNYLE 299
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S0GMS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GMS6_9STRA) HSP 1 Score: 191 bits (486), Expect = 1.790e-54 Identity = 122/273 (44.69%), Postives = 164/273 (60.07%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHA---GVDELEEGVGNAGDAPVYVINGEL--------SDLDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTE------IFYFCHIHDEMSARINIVDAEGDEPADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIEK-ATYSSNTVGFMHQMIPHHENAVNMARVLLKYPGDE-ELDEEVSAMLREIINSQNAQITYMRSYLEEQGI 765
G+ F+Q++ +NWYHP+GFAY DGAH G +E E V AG+ Y+ING++ + LD YEPEFFYP W NY LT+T P+V I+YFCHIH +MS +I I D GD E LY P+V + FD DCG+ G S YA E+E C Q FF G ++ F++C+ A+DC+M+ EM +E A S V FM QMIPHH NAVNMA++LLK+ GD + E++++ L IIN QN Q+ R+YLE + +
Sbjct: 123 GDVITFDQSDVSNWYHPVGFAYRADGAHGDTWGAEENPE-VEGAGELQ-YMINGKVPTCDDAGDTGLDCYEPEFFYPRGDWEGSNYKAVLTIT-PEVAAASSGGVIYYFCHIHSKMSGKIIIEDYAGDTE---EQALYAPVVNDAFDTDCGTTGISEYA---AGAENE-CGVQ-FFGGSKDTHFEKCLQAVDCQMHKEMIMETTADGSDEIVTFMQQMIPHHNNAVNMAKILLKFGGDNVDKVEDLTSTLWSIINEQNFQVHGFRNYLEPENL 384
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S0B2P7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B2P7_9DINO) HSP 1 Score: 185 bits (469), Expect = 1.450e-52 Identity = 118/276 (42.75%), Postives = 158/276 (57.25%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHA---GVDELEEGVGNAGDAPVYVINGELSD--------LDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTE-----IFYFCHIHDEMSARINIVDAEGDE---------PADPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIE-KATYSSNTVGFMHQMIPHHENAVNMARVLLKYPGDEELD-EEVSAMLREIINSQNAQITYMRSYL 750
G+TY F+Q + +NWYHP+GFAY PDGAH G DE EE V AG+ +Y I+G ++ LD Y+PEFFYP W+ +NY LT+T + I+YFC IH +MS +I I +A+G P E ELY R FD+ CGS G+ AYA S C D + G ++ F +CM AIDC+MN +MR+ T+ S V FM Q+IPHH NAVNMA++LLK+ E L +++ +L IIN QN Q+ R+YL
Sbjct: 16 GQTYTFDQRDPSNWYHPVGFAYYPDGAHGATWGGDEREE-VEAAGEL-LYKIDGSVTTCPDARDTGLDCYKPEFFYPRADWMAKNYAAELTITQAMADKSHGGVIYYFCRIHSKMSGKIIIQNADGSPVTTATGGPLPNPKERELYPVPERGAFDISCGSTGAEAYARS----ASMACKDS-YLRGSLDTDFKKCMRAIDCQMNRQMRVAGHDTHQSAIVTFMQQIIPHHINAVNMAKILLKFAPTEVLAVKDLEDILWSIINEQNYQVHQFRNYL 284
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Match: A0A7S0DZJ1_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DZJ1_9EUKA) HSP 1 Score: 186 bits (473), Expect = 2.010e-52 Identity = 119/287 (41.46%), Postives = 159/287 (55.40%), Query Frame = 1
Query: 4 GETYVFNQNNSTNWYHPLGFAYEPDGAHA---GVDELEEGVGNAGDAPVYVINGELSD--------LDTYEPEFFYPEEAWLEQNYTVNLTVTDPDVTE-----IFYFCHIHDEMSARI--NIVDAEGDEPA--DPEIELYEPLVREEFDVDCGSFGSSAYAPDDGTFESEMCPDQKFFCGDPNSSFDRCMHAIDCKMNVEMRIE-KATYSSNTVGFMHQMIPHHENAVNMARVLLKYP-GDEELDEEVSAMLREIINSQNAQITYMRSYLEEQGIDVVASECANNS 798
G+TY F+Q++ TNWYHP+GFAYEPDGAH G DEL+E G +Y ING + LD YEPEFFYP + W+ YT LT+T I+YFCHIH +MS +I N VD EP E+ELY P+V FD +CG+ Y+ G M D++F G +++FD C+ A+DC MN EM + KA ++ F+ QMIPHH NAVNMA++LLK G + + +L I+++QN QI R+ L G + AN S
Sbjct: 118 GQTYTFDQSDPTNWYHPVGFAYEPDGAHGSTWGGDELDEVEGKG--ELLYKINGAATTCDDAGDTGLDCYEPEFFYPRDVWIGATYTAELTITQAVADRSHGGVIYYFCHIHSKMSGKIVINTVDGTRFEPTLNPTELELYSPVVLSTFDKNCGTTAVVEYSDATGG----MACDERFVPGAIDTTFDHCLQAVDCAMNKEMHVPLKAPLTT----FLEQMIPHHANAVNMAKLLLKTDLGAVAATDGLEDILYGIVSTQNFQIHQFRNILSAVGDTHAQCQAANGS 394 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5459.12844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5459.12844.1 >prot_H-elongata_contig5459.12844.1 ID=prot_H-elongata_contig5459.12844.1|Name=mRNA_H-elongata_contig5459.12844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=296bp RGETYVFNQNNSTNWYHPLGFAYEPDGAHAGVDELEEGVGNAGDAPVYVIback to top mRNA from alignment at H-elongata_contig5459:562..8545+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5459.12844.1 ID=mRNA_H-elongata_contig5459.12844.1|Name=mRNA_H-elongata_contig5459.12844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7984bp|location=Sequence derived from alignment at H-elongata_contig5459:562..8545+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5459:562..8545+ >mRNA_H-elongata_contig5459.12844.1 ID=mRNA_H-elongata_contig5459.12844.1|Name=mRNA_H-elongata_contig5459.12844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1776bp|location=Sequence derived from alignment at H-elongata_contig5459:562..8545+ (Himanthalia elongata Himel1 dioecious)back to top |