mRNA_H-elongata_contig54534.12837.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54534.12837.1
Unique NamemRNA_H-elongata_contig54534.12837.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.500e-22
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   71 QRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            +RD   AGRMMT SR + D KYV+M  FLHGN+DL+ E I ELPADGV+G Q+KIPGR SNP+  L  L G FGPV
Sbjct:  681 ERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPV 756          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.150e-19
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTD-VKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            L+RDFS+AGRMMT SRR+ D   YV+M  FLHGNLDLI EDI +L  + V  A+SKIPGR +NP+  L+ L GAF PV
Sbjct:   26 LERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPV 100          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.820e-18
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   44 GQLVWCSELQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            G L   + L+ DFS+AGRMMT SR + D KYV+M  FLHGNLDLI EDI +L  + V  A++KIPGR +NP+  L+ L GAF PV
Sbjct:  403 GALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPV 484          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.540e-17
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            L+RDFS+AGRMMT SR + D KYV+M  FLHGNLDLI EDI +L       A++KIPGR +NP+  L+ L G F PV
Sbjct:  638 LERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPV 711          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.230e-16
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            L+RDF+DA  MM  SR + D KYV+M  FLHGNLDLI E I EL  + V   Q+KIPGR SNP+P L GL G  G V
Sbjct:  578 LERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLV 651          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.430e-16
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTDVKY-VDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            L+RDFS+AGRMMT SR + D KY V+M  FLHGNLDLI EDI  L  + V  A++  PGR +NP+  L+ L GAF PV
Sbjct:   26 LERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPV 100          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.770e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 2
Query:  134 YVDMSFFLHGNLDLISEDIAELPADGVDGAQSK-IPGRFSNPLP*LQGLAGAFGPV 298
            YV+M  FLHGNLDLI +DI  LP DG D A +K +PGR  NP P L+ ++GAFGPV
Sbjct:   67 YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPV 122          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.250e-13
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDIAELPADGVDGAQSKIPGRFSNPLP*LQGLAGAFGPV 298
            L+  FS+AGRM T SR + D  YV+M  FLHGNL+LI EDI +L  + V  A++K PGR +NP+  L+ L GAF PV
Sbjct:  174 LECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRLANPVDGLEPLDGAFAPV 247          
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.200e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 2
Query:   68 LQRDFSDAGRMMTLSRRSTDVKYVDMSFFLHGNLDLISEDI 190
            L+ DF DAGR+MT SR +TD KYV+M  FLHGNLDLI EDI
Sbjct:   68 LEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LFP4_ECTSI6.500e-2263.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE4.150e-1961.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE4.820e-1856.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE2.540e-1758.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI2.230e-1658.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE4.430e-1657.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE3.770e-1360.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE9.250e-1353.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE7.200e-1070.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54534contigH-elongata_contig54534:2096..2395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size301
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.3206515-CDS-H-elongata_contig54534:2095..23951622930888.3206515-CDS-H-elongata_contig54534:2095..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54534 2096..2395 +
1691679612.501992-CDS-H-elongata_contig54534:2095..23951691679612.501992-CDS-H-elongata_contig54534:2095..2395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54534 2096..2395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54534.12837.1prot_H-elongata_contig54534.12837.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54534 2096..2395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54534.12837.1

>prot_H-elongata_contig54534.12837.1 ID=prot_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MWWKRWESSYPLLARAARVVFGAPARFQRCWAHDDVIEKIHRCQVRGHEL
FSARQPGPHFRGHCRASSRRGRRCTKQDSRAVLQPAAVAARASRCIRPSG
back to top

mRNA from alignment at H-elongata_contig54534:2096..2395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54534.12837.1 ID=mRNA_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig54534:2096..2395+ (Himanthalia elongata Himel1 dioecious)
ATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGC TCGTGTGGTGTTCGGAGCTCCAGCGCGATTTCAGCGATGCTGGGCGCATG ATGACGTTATCGAGAAGATCCACCGATGTCAAGTACGTGGACATGAGCTT TTTTCTGCACGGCAACCTGGACCTCATTTCCGAGGACATTGCAGAGCTTC CAGCCGACGGGGTCGACGGTGCACAAAGCAAGATTCCCGGGCGGTTCTCC AACCCGCTGCCGTAGCTGCAAGGGCTAGCCGGTGCATTCGGCCCAGTGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54534:2096..2395+

>mRNA_H-elongata_contig54534.12837.1 ID=mRNA_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig54534:2096..2395+ (Himanthalia elongata Himel1 dioecious)
ATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGC
TCGTGTGGTGTTCGGAGCTCCAGCGCGATTTCAGCGATGCTGGGCGCATG
ATGACGTTATCGAGAAGATCCACCGATGTCAAGTACGTGGACATGAGCTT
TTTTCTGCACGGCAACCTGGACCTCATTTCCGAGGACATTGCAGAGCTTC
CAGCCGACGGGGTCGACGGTGCACAAAGCAAGATTCCCGGGCGGTTCTCC
AACCCGCTGCCGTAGCTGCAAGGGCTAGCCGGTGCATTCGGCCCAGTGGA
ATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGC
TCGTGTGGTGTTCGGAGCTCCAGCGCGATTTCAGCGATGCTGGGCGCATG
ATGACGTTATCGAGAAGATCCACCGATGTCAAGTACGTGGACATGAGCTT
TTTTCTGCACGGCAACCTGGACCTCATTTCCGAGGACATTGCAGAGCTTC
CAGCCGACGGGGTCGACGGTGCACAAAGCAAGATTCCCGGGCGGTTCTCC
AACCCGCTGCCGTAGCTGCAAGGGCTAGCCGGTGCATTCGGCCCAGTGGA
back to top