mRNA_H-elongata_contig54532.12836.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A6H5KVE2_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVE2_9PHAE) HSP 1 Score: 327 bits (839), Expect = 2.940e-105 Identity = 200/415 (48.19%), Postives = 249/415 (60.00%), Query Frame = 1
Query: 7 TAATADEFDITEFDGLTRSELQAMCKRLQLRAVGKTCELVSRLREHQRKRKQQHEERDQLL--EKVTTHTHHTKDPP--SPSSEELIVDVVSE-------EHYSPGSSFALDLPGTSAIAVQPQLSYSAVGPDRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGV---------------------------------NVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEERRKAATNIVADGPSDRGYSSVFHFTSEAIWNRAP 1119
TAAT ++ + + L+RSELQ +CK+L LRAVGKT EL+SR+ E H R++ L + TT + + P +P E + +++S +YS GS P + + R F EL+DEQWA V +LG+LL EWNG+MNLISR+DI NVM RHVVPCLAMAKA+ +DG +VLDVGTGGGLPGLP+AI +P V+FTLIDG GKKI AV DMA+RLGL NVR FH RAE+V+E FDF++GRAV +LPKFVGF+DKNLK N R T N D S+ LKRG+LYMRGE+ +EEL ELGARPSTV+ L+ VLEE + + G DRGYSS+FHFTSEAIWNR P
Sbjct: 88 TAATQQQYTAQDLEALSRSELQGLCKKLNLRAVGKTSELLSRVLESD-----DHARREKALGTKPATTESTASSSPKDEAPMGESTMAELLSSVDDGGNNTNYSSGSQEKAT-PXXXXXXXXXAAPSTDFFLEDIRPVFDELSDEQWAKVGQLGQLLTEWNGKMNLISRKDIANVMPRHVVPCLAMAKALDFEDGTYGEMRGAGEDPSRTLPPDPQPPPRREYLPSLSWSVLDVGTGGGLPGLPLAICFPMVKFTLIDGRGKKIKAVADMADRLGLRNVRTFHVRAEEVYEAFDFVMGRAVTNLPKFVGFIDKNLKPNDGR----TSNPADSSS-----SSSNNSLKRGILYMRGEVSEEELAELGARPSTVIPLQRVLEEAGQDGDVGLGGGADDRGYSSIFHFTSEAIWNRVP 487
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A7S2V0Z1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z1_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.280e-54 Identity = 100/221 (45.25%), Postives = 141/221 (63.80%), Query Frame = 1
Query: 391 PELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPP---LKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEERRKAATNIV 1044
P+L+++QWA +E+LG+LL EWN ++NLISR+DI+NVM RH++PCLAMA +I + G V+DVGTGGGLPGLP+AI PQ +F L+D GKKI AV DMAERLGL +V+A HTR ED++E D I+GR+V +LP+F+ + KNL VH PP RG+ Y++G ++EL + +P ++L V + N++
Sbjct: 60 PKLSNDQWAQLEKLGDLLTEWNEKVNLISRKDIDNVMVRHILPCLAMAASIDIDPGWTVMDVGTGGGLPGLPLAICNPQTQFLLVDARGKKIEAVADMAERLGLAHVKALHTRVEDINEPCDLILGRSVTALPRFMMWTRKNL-------------------VH-----PGPPGSTKMRGIAYIKGGNFEDELGGIDLKPEKAIALNTVFSSLADSDKNVL 256
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A355SZU0_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Opitutae TaxID=414999 RepID=A0A355SZU0_9BACT) HSP 1 Score: 178 bits (452), Expect = 8.710e-51 Identity = 92/211 (43.60%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
++ ++ FP +A+E W ++++ +LL EWN ++NLISR+DIE++ RH+ CLA+ +KL +G ++DVGTGGG PG+ MAI YPQ +FTLID GKKI V D+ +LGL NV A TRAE+V + FDF+ GRAV +LP+F ++ N++R EK++ P GVLY +G +EL+ LG RP V++LE
Sbjct: 4 EQLKQQFPNIAEETWPVLQKWSQLLREWNEKINLISRKDIEHLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKITVVQDLINQLGLKNVEAKQTRAEEVKKQFDFVTGRAVKNLPEFFMWIKNNVRRG---------------------EKNTIP--NGVLYWKGGEMDDELEVLGIRPRKVINLE 191
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A6N4WUR2_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Lentimonas TaxID=417293 RepID=A0A6N4WUR2_9BACT) HSP 1 Score: 178 bits (452), Expect = 8.710e-51 Identity = 90/211 (42.65%), Postives = 134/211 (63.51%), Query Frame = 1
Query: 370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
++ ++ FP +++++W ++E+ LL +WN ++NLISR+DIE + RH+ CLA+ +KL +G ++DVGTGGG PG+ MAI YPQ +F LID GKKI V D+ ++LGL NV A HTRAE + + FDF+ GRAV +LP++ ++ KN++R EK++ P GVLY +G +ELD LG RP V++LE
Sbjct: 4 EQLKEQFPNISEDKWPVLEKWAVLLRDWNSKINLISRKDIEYLEERHLSHCLAITNHLKLMNGTRIMDVGTGGGFPGIIMAICYPQAQFLLIDAIGKKIKVVQDLIDQLGLKNVEAKHTRAEAITKQFDFVTGRAVKNLPEYFSWIKKNVRRG---------------------EKNTIP--NGVLYWKGGDMDDELDTLGIRPRKVINLE 191
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A350ARR8_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A350ARR8_9BACT) HSP 1 Score: 175 bits (443), Expect = 1.640e-49 Identity = 92/208 (44.23%), Postives = 127/208 (61.06%), Query Frame = 1
Query: 379 RKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLE 1002
R FP ++DE W ++E+ LL EWN ++NLISR+DIE++ H+ CL + +KL +G V+DVGTGGG PG+ MAI YPQ +FTLID GKKI V D+ ++LGL NV A TRAE +++ FDFI GRAV +LP++ ++ N+ R RN+ + GVLY +G +ELD LG RP V++LE
Sbjct: 5 RAQFPNVSDETWPILEKWAVLLREWNEKINLISRKDIEHLEEHHLSHCLEITNHLKLMNGARVMDVGTGGGFPGIIMAICYPQAQFTLIDSIGKKIKVVQDLVDQLGLKNVEAKQTRAEQINKEFDFITGRAVKNLPEYFSWIKGNV-RKGQRNS----------------------IPNGVLYWKGGDMDDELDALGIRPRKVINLE 189
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A2E8KST0_9FLAO (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Crocinitomicaceae bacterium TaxID=2026728 RepID=A0A2E8KST0_9FLAO) HSP 1 Score: 174 bits (441), Expect = 2.330e-49 Identity = 89/207 (43.00%), Postives = 129/207 (62.32%), Query Frame = 1
Query: 379 RKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSL 999
RKHFP+L D+Q A E+LGE WN ++NL+SR+DI+ +RHV+ LA+AKA+K +G +LDVGTGGGLPGLP+AI YP+V+FTL D GKKI V ++ E +GL N +A+H RA +V FDFI+ RAV + KF+ +V+ +++ P G+LY++G ++EL+E+ R S +LS+
Sbjct: 5 RKHFPDLTDKQVAQFEKLGESFVHWNSQINLVSRKDIDEFYTRHVLHSLAIAKAMKFAEGSEILDVGTGGGLPGLPLAILYPEVKFTLCDSIGKKIKVVKELIEDVGLKNTKAYHRRANEVPGKFDFIVSRAVTRMNKFIPWVENKIRKRCIN-----------------------PWPNGILYLKGGDLRQELNEIN-RDSEILSI 187
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A2D7F536_9BACT (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A2D7F536_9BACT) HSP 1 Score: 173 bits (439), Expect = 6.460e-49 Identity = 92/212 (43.40%), Postives = 129/212 (60.85%), Query Frame = 1
Query: 376 YRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVL 1011
Y++ FP + ++ W ++ER ELL EWN ++NLISR+DI+ + RH++ CLA+ + L G +LDVGTGGGLPGLPMAI YPQ +FTLID KK+ V +A+ LGL NV A RAE + FDF+ GRAV +LP+F+ ++ NL++ G H L GV+Y +G + EL+ LG + TV+ LE+VL
Sbjct: 6 YQQLFPNIPEDAWPVLERWAELLREWNTKINLISRKDIDALEERHLLHCLAITNVLILNKGARILDVGTGGGLPGLPMAICYPQAKFTLIDSIAKKVEVVQTIADELGLKNVVARQVRAEALKTQFDFVTGRAVKNLPEFLSWIQNNLEK---------------GDXH--------SLPNGVIYWKGGSIEAELNPLGIQSKTVVELENVL 194
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: W7TNU2_9STRA (16s rrna methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNU2_9STRA) HSP 1 Score: 176 bits (445), Expect = 7.660e-49 Identity = 91/192 (47.40%), Postives = 126/192 (65.62%), Query Frame = 1
Query: 319 TSAIAVQPQLSYSAVGPDRYRK-HFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAI-KLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVE 888
++A Q Q+ S G K FPEL QW +ERLG L+ EWN ++N+ISR+D+ENV+S HV+PC+ ++K + K +G V+DVGTGGG PGLP+AI PQV+F L+D GKK+ V DMA RLGL NVR HTR E+V E F+F+ GR+V ++P+FVG+V L S DDG+++++
Sbjct: 44 SAARDPQKQIPVSRAGFTAQAKARFPELTPVQWERLERLGALVQEWNCKVNVISRKDVENVLSHHVLPCMGISKLLSKAAEGTKVMDVGTGGGFPGLPLAICCPQVKFWLVDSIGKKVRVVGDMAVRLGLQNVRVRHTRVEEVRERFNFVTGRSVTAMPRFVGWVKDKLHAAPSAPLKGVP---DDGILYIK 232
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: D5EM03_CORAD (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865 / 04OKA010-24) TaxID=583355 RepID=D5EM03_CORAD) HSP 1 Score: 171 bits (433), Expect = 4.900e-48 Identity = 91/216 (42.13%), Postives = 127/216 (58.80%), Query Frame = 1
Query: 370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSLEHVLEE 1017
++ R FP + D W ++ LL EWN ++NLISR+DIE++ RH+ CL + ++L +G ++DVGTGGG PGL MAI YPQ +FTL+D GKKI V D+AERLGL NV A RAE + + FDFI GRAV +LP++ ++ NL+R RN+ + GVLY +G + EL+ LG RP + +E LE+
Sbjct: 2 EQIRARFPNVDDGTWTLLAEWATLLREWNEKINLISRKDIEHLEERHLAHCLVITNHLRLMNGARIMDVGTGGGFPGLIMAICYPQAQFTLVDSIGKKIGVVADIAERLGLRNVEARQCRAESIRKEFDFITGRAVKNLPEYFSWIKGNLRRG-QRNS----------------------IPNGVLYWKGGELEPELEALGIRPRLSIDVEQALED 194
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Match: A0A368BBI9_9BACT (Ribosomal RNA small subunit methyltransferase G n=2 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A368BBI9_9BACT) HSP 1 Score: 169 bits (427), Expect = 4.300e-47 Identity = 91/210 (43.33%), Postives = 125/210 (59.52%), Query Frame = 1
Query: 370 DRYRKHFPELADEQWAMVERLGELLAEWNGRMNLISRRDIENVMSRHVVPCLAMAKAIKLQDGVNVLDVGTGGGLPGLPMAIYYPQVEFTLIDGTGKKIHAVHDMAERLGLTNVRAFHTRAEDVHELFDFIIGRAVASLPKFVGFVDKNLKRNASRNTMSTVNGDDDGVVHVEVEKSSPPLKRGVLYMRGEIDQEELDELGARPSTVLSL 999
D RK FP++ + W ++E LL EWN ++NLISR+DIE + +RH+ CL++ +KL G ++DVGTGGG PG+ MAI YPQ FTLID GKKI V D+A++L L NV A RAE+V + FDFI GRAV +LP++ ++ N++R E++S P GVLY +G +EL LG RP +SL
Sbjct: 2 DSIRKQFPQIEEAAWPLLEAWSALLREWNTKINLISRKDIEYLEARHLSHCLSITNHLKLMSGARIMDVGTGGGFPGIIMAICYPQAHFTLIDSIGKKITVVQDLADKLELKNVEARQCRAEEVKKKFDFITGRAVKNLPEYFSWIKDNVRRG---------------------ERNSIP--NGVLYWKGGELDDELAALGIRPRKTISL 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54532.12836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54532.12836.1 >prot_H-elongata_contig54532.12836.1 ID=prot_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=373bp ATTAATADEFDITEFDGLTRSELQAMCKRLQLRAVGKTCELVSRLREHQRback to top mRNA from alignment at H-elongata_contig54532:977..3521+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54532.12836.1 ID=mRNA_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2545bp|location=Sequence derived from alignment at H-elongata_contig54532:977..3521+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54532:977..3521+ >mRNA_H-elongata_contig54532.12836.1 ID=mRNA_H-elongata_contig54532.12836.1|Name=mRNA_H-elongata_contig54532.12836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2238bp|location=Sequence derived from alignment at H-elongata_contig54532:977..3521+ (Himanthalia elongata Himel1 dioecious)back to top |