mRNA_H-elongata_contig54500.12834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54500.12834.1
Unique NamemRNA_H-elongata_contig54500.12834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 9.900e-50
Identity = 92/122 (75.41%), Postives = 108/122 (88.52%), Query Frame = 1
Query:    7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGT-AKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
            VM+ LE GL++IGV SVRIDG+T+Q +RQPIVDRFQ   ++SVILL+ITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHR G  AKTVLI+Y++G+GTMDD M+  IHRKQ T++STV
Sbjct:  398 VMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSSSVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVGRGTMDDGMISTIHRKQTTLRSTV 519          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 7.300e-49
Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 1
Query:    7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGT-AKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
            VM+ LE GL++IGV SVRIDG+T+Q +RQPIVDRFQ   ++SVILL+ITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHR G  AKTVLI+Y++G+GTMDD ++  IHRKQ T++STV
Sbjct:  800 VMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVGRGTMDDGVISTIHRKQTTLRSTV 921          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A835Z711_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z711_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.370e-34
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 1
Query:    1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKG-TMDDAMMPLIHRKQWTIKST 366
            Q V++ +E  ++D GV  VRIDG T + +RQ +VDRFQ +  + +ILL+ITAAGVGITLTA S A FAELYWTPG MAQAEDRIHR G     LIQ+++    TMD  ++  I  KQ T++ST
Sbjct:   15 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 137          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A7S0TEQ7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TEQ7_HEMAN)

HSP 1 Score: 119 bits (299), Expect = 7.220e-32
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
            V++ LEA +    V  +RIDG    ++RQ +VD FQ+D+ + V +L +TAAGVG+TLTA+S  VFAEL WTPG M QAEDR+HR G  + V + Y+IGKGT+DD + P I RK
Sbjct:   42 VLDGLEAAVRKAKVGLIRIDGGVDASQRQGLVDSFQKDEGVRVAVLGLTAAGVGLTLTASSTVVFAELNWTPGVMVQAEDRVHRIGQRECVNVHYLIGKGTLDDVIWPGIVRK 154          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A0C2C8X4_9BILA (Helicase protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2C8X4_9BILA)

HSP 1 Score: 115 bits (289), Expect = 2.410e-30
Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
            Q V++T++  ++   ++SVRIDG TS  +R  +   FQ D  + V +L++TAAGVGITLTAAS  VFAEL+W PG++ QAEDR HR G   +V +QY+I + T DD + PL+ +K
Sbjct:   51 QIVLDTVQVEVQKRNLKSVRIDGQTSSKDRGNLCQAFQEDPDVEVAILSMTAAGVGITLTAASVVVFAELHWNPGTLLQAEDRAHRVGQKDSVFVQYLIARNTADDFIWPLVQKK 165          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A7S2APM7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2APM7_9DINO)

HSP 1 Score: 114 bits (284), Expect = 2.500e-30
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   10 MNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
            M+ +E  L + G  S+RIDG T  A+R  +V +FQ ++ + V +L+ITAAG G+TLTAA   VF ELYW PG M QAEDR HR G   +V +QY++  GT+DDA+   + RK
Sbjct:    1 MDAVERKLRERGTPSIRIDGKTHHAQRPGLVAKFQEEECVRVAVLSITAAGTGLTLTAAQTVVFGELYWVPGQMHQAEDRAHRIGQHDSVAVQYLVAAGTLDDALFKALERK 112          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A182ESM8_ONCOC (Helicase C-terminal domain-containing protein n=1 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182ESM8_ONCOC)

HSP 1 Score: 118 bits (296), Expect = 3.970e-30
Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKS 363
            Q V++ +   +   G+RS+RIDGAT    R      FQ +D + V +L+ITAAG+G+TLTAAS  +FAEL+W PG++ QAEDR HR G   +V +QY+I KGT DD + PLI +K   ++S
Sbjct:  136 QVVLDMISMDIAKKGLRSIRIDGATVSRSRDEQCRLFQENDDVMVAILSITAAGIGVTLTAASVVIFAELHWNPGTLKQAEDRAHRLGQKDSVFVQYLIAKGTADDVLWPLIQKKLDVLQS 256          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A1S3JIJ9_LINUN (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIJ9_LINUN)

HSP 1 Score: 122 bits (307), Expect = 5.430e-30
Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
            Q ++N L+  L D+ ++ +RIDG     ER  +VD FQ+D    V LL+ITAAGVG+TLTAAS  VFAELYWTPG++ Q EDR HR G    V + Y++ KGTMD+ M  +I+RK   + +T+
Sbjct:  358 QDMLNGLQETLHDLDIKFIRIDGNVPPKERGMLVDTFQKDANTRVALLSITAAGVGLTLTAASLVVFAELYWTPGTLEQCEDRAHRIGQQNRVNVHYLVAKGTMDEWMWSMINRKTTVVTATL 480          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A0B2VFF8_TOXCA (Putative SMARCAL1-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VFF8_TOXCA)

HSP 1 Score: 119 bits (298), Expect = 7.280e-30
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1
Query:    1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
            Q V++T+   +   G+RS+RIDG T+   R+     FQ DD + V +L++TAAGVG+TLTAA+  VFAEL+W PG++ QAEDR HR G   +V +QY++  GT DD + PLI RK
Sbjct:  203 QVVLDTISMHITKTGLRSIRIDGTTAPKSREEQCRLFQEDDDVVVAVLSMTAAGVGVTLTAATVVVFAELHWNPGTLKQAEDRAHRVGQTDSVFVQYLLANGTADDVLWPLIQRK 317          
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A3P7YI71_9BILA (Helicase C-terminal domain-containing protein n=2 Tax=Brugia timori TaxID=42155 RepID=A0A3P7YI71_9BILA)

HSP 1 Score: 113 bits (282), Expect = 1.500e-29
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   43 GVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
            G+RS+RIDG T+   R      FQ +D + V +L+ITAAG+G+TLTAAS  VFAEL+W PG++ QAEDR HR G   +V +QY+I KGT DD + PLI +K
Sbjct:    7 GLRSIRIDGTTASRLRDEQCRLFQENDDVMVAVLSITAAGIGVTLTAASVVVFAELHWNPGTLKQAEDRAHRLGQKDSVFVQYLIAKGTADDILWPLIQKK 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCM3_9PHAE9.900e-5075.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK86_ECTSI7.300e-4974.59Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A835Z711_9STRA1.370e-3455.28P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S0TEQ7_HEMAN7.220e-3253.10Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0C2C8X4_9BILA2.410e-3048.70Helicase protein n=1 Tax=Ancylostoma duodenale Tax... [more]
A0A7S2APM7_9DINO2.500e-3049.11Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A182ESM8_ONCOC3.970e-3047.93Helicase C-terminal domain-containing protein n=1 ... [more]
A0A1S3JIJ9_LINUN5.430e-3049.59DNA annealing helicase and endonuclease ZRANB3-lik... [more]
A0A0B2VFF8_TOXCA7.280e-3049.57Putative SMARCAL1-like protein n=2 Tax=Toxocara ca... [more]
A0A3P7YI71_9BILA1.500e-2954.46Helicase C-terminal domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54500contigH-elongata_contig54500:1536..2643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1e-41
Seed eggNOG ortholog2880.D8LK86
KEGG koko:K14440
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categorysignal anchor
Exons3
Model size369
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54500.12834.1prot_H-elongata_contig54500.12834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54500 1545..2643 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.9391427-UTR-H-elongata_contig54500:1535..15441622930887.9391427-UTR-H-elongata_contig54500:1535..1544Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54500 1536..1544 +
1691679612.3917854-UTR-H-elongata_contig54500:1535..15441691679612.3917854-UTR-H-elongata_contig54500:1535..1544Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54500 1536..1544 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.9589386-CDS-H-elongata_contig54500:1544..16161622930887.9589386-CDS-H-elongata_contig54500:1544..1616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 1545..1616 +
1691679612.4053214-CDS-H-elongata_contig54500:1544..16161691679612.4053214-CDS-H-elongata_contig54500:1544..1616Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 1545..1616 +
1622930887.9771826-CDS-H-elongata_contig54500:1960..21431622930887.9771826-CDS-H-elongata_contig54500:1960..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 1961..2143 +
1691679612.413376-CDS-H-elongata_contig54500:1960..21431691679612.413376-CDS-H-elongata_contig54500:1960..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 1961..2143 +
1622930888.0213332-CDS-H-elongata_contig54500:2538..26431622930888.0213332-CDS-H-elongata_contig54500:2538..2643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 2539..2643 +
1691679612.4214892-CDS-H-elongata_contig54500:2538..26431691679612.4214892-CDS-H-elongata_contig54500:2538..2643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54500 2539..2643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54500.12834.1

>prot_H-elongata_contig54500.12834.1 ID=prot_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAA
GVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGT
MDDAMMPLIHRKQWTIKSTV
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mRNA from alignment at H-elongata_contig54500:1536..2643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54500.12834.1 ID=mRNA_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig54500:1536..2643+ (Himanthalia elongata Himel1 dioecious)
CAGGCAGTGATGAACACGCTTGAAGCCGGCCTTGAGGACATTGGAGTCCG CTCGGTGCGAATTGATGGCGCCACCTCTCAGGTATGTCCACGATGTGCAC GCGTGGGTGTTCATCCTTCTCGCAAGTTAAGGGGAAACGAGCGCACAAAC ACGAGGCAGGTCGTGTACACATCACCGAAGTTTCCCTTCCGAGAGTATGG TCGTGTTTTCGTGATGGTGTTGTTCGCAACTTTTGGGGCGATTGCGCAAC AGAGCACGAATTGCGGAAGACTAGACGCGCAATAACCGCCAGGATTTGGA CGCCCTACGATGCAAACCATATCTCGTCATGTCCCGCCCTATCCAATCCC GTCCCGACGATCCCACCGCTCGTACCCGGCCGCCCTGCCGCTGTCGCTTT TGAACCCCACCCCTCCCCCCGCTAGGCGGAGCGGCAGCCGATCGTGGATC GCTTCCAGCGTGACGACACGCTGTCCGTCATATTGCTCGCGATCACCGCG GCAGGGGTTGGGATCACGCTCACGGCCGCTTCGTGTGCCGTCTTCGCCGA GCTGTACTGGACGCCCGGCTCTATGGCGCAGGCAGAAGATCGGATCCACA GGTCCGGGGTTGGGGGGGGGTCACGATGGCCCAGGCATTATTCATTTTCC TGTGTCTCGGGCGCGATGATGGCTTATGACGGTTTTCTTCCTCTCCGGTG TCAATGTTTCGTTGCGAGTGATGAGATCGTGGAAGGGTCTCTCCCTCGCT TCTCTTGAGAATGTTGATGCTTCCCGTTAGCGGGTGAGCGCTAGTTGTCG TCTTCTATTTCACCTGATAGTCTGAGCTCCGCGTGCCACTTCCGGACCCC CCCCCCTCCCTGCCTTGGGGATTCTCGTTTCCATCAGCGGCCTTTTTTTT GTCTCTTATCGTCACTCGTATGTTGATGCTGTTTGTTTTGGGCGGGATCG CCGCGATGACGCGCTGGGGGGGACCCGTGGTGGTATCGAACAGGATCGGG CAGACAGCCAAGACGGTGCTGATCCAGTACATGATCGGCAAGGGCACTAT GGACGACGCCATGATGCCATTGATACACCGGAAGCAATGGACGATCAAGT CCACCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig54500:1536..2643+

>mRNA_H-elongata_contig54500.12834.1 ID=mRNA_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig54500:1536..2643+ (Himanthalia elongata Himel1 dioecious)
ATGAACACGCTTGAAGCCGGCCTTGAGGACATTGGAGTCCGCTCGGTGCG
AATTGATGGCGCCACCTCTCAGATGAACACGCTTGAAGCCGGCCTTGAGG
ACATTGGAGTCCGCTCGGTGCGAATTGATGGCGCCACCTCTCAGGCGGAG
CGGCAGCCGATCGTGGATCGCTTCCAGCGTGACGACACGCTGTCCGTCAT
ATTGCTCGCGATCACCGCGGCAGGGGTTGGGATCACGCTCACGGCCGCTT
CGTGTGCCGTCTTCGCCGAGCTGTACTGGACGCCCGGCTCTATGGCGCAG
GCAGAAGATCGGATCCACAGGTCCGGGGCGGAGCGGCAGCCGATCGTGGA
TCGCTTCCAGCGTGACGACACGCTGTCCGTCATATTGCTCGCGATCACCG
CGGCAGGGGTTGGGATCACGCTCACGGCCGCTTCGTGTGCCGTCTTCGCC
GAGCTGTACTGGACGCCCGGCTCTATGGCGCAGGCAGAAGATCGGATCCA
CAGGTCCGGGACAGCCAAGACGGTGCTGATCCAGTACATGATCGGCAAGG
GCACTATGGACGACGCCATGATGCCATTGATACACCGGAAGCAATGGACG
ATCAAGTCCACCGTCACAGCCAAGACGGTGCTGATCCAGTACATGATCGG
CAAGGGCACTATGGACGACGCCATGATGCCATTGATACACCGGAAGCAAT
GGACGATCAAGTCCACCGTC
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