mRNA_H-elongata_contig54472.12829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54472.12829.1
Unique NamemRNA_H-elongata_contig54472.12829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54472.12829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54472contigH-elongata_contig54472:1236..1674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size439
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.5930142-CDS-H-elongata_contig54472:1235..16731622930887.5930142-CDS-H-elongata_contig54472:1235..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54472 1236..1673 +
1691679612.253962-CDS-H-elongata_contig54472:1235..16731691679612.253962-CDS-H-elongata_contig54472:1235..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54472 1236..1673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54472.12829.1prot_H-elongata_contig54472.12829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54472 1236..1673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54472.12829.1

>prot_H-elongata_contig54472.12829.1 ID=prot_H-elongata_contig54472.12829.1|Name=mRNA_H-elongata_contig54472.12829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
AFFSLPPRQHQYRYTSIVAYYSIMCTTRAGRGTGMCPLNGFEAAAAAAAA
AALSRLAITLHFDIRYERELANPPTNQPVNRSIDFSIGFDGIEMVEVYES
TVQYRHLHTESYTTYFHYSLIQSNPIHSNSIQSPSCTKIVCLPSPS
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mRNA from alignment at H-elongata_contig54472:1236..1674+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54472.12829.1 ID=mRNA_H-elongata_contig54472.12829.1|Name=mRNA_H-elongata_contig54472.12829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=439bp|location=Sequence derived from alignment at H-elongata_contig54472:1236..1674+ (Himanthalia elongata Himel1 dioecious)
GCCTTCTTCTCCCTCCCCCCTCGACAACACCAATACCGCTACACTTCAAT
TGTAGCGTATTATAGTATAATGTGTACCACGCGCGCCGGACGCGGCACGG
GGATGTGTCCTCTCAACGGCTTCGAAGCAGCAGCGGCAGCAGCAGCAGCA
GCAGCACTAAGTCGTCTAGCAATCACCCTTCACTTTGATATCAGATATGA
GAGAGAGCTAGCCAACCCACCAACCAACCAACCAGTCAACCGATCTATTG
ATTTTTCGATCGGGTTTGACGGGATTGAGATGGTGGAGGTATATGAGAGT
ACAGTACAGTACCGACACCTTCACACTGAATCCTATACCACATATTTCCA
CTACAGCTTAATCCAATCCAATCCAATCCATTCCAACTCAATCCAATCTC
CGTCTTGTACGAAAATCGTTTGTCTTCCGTCGCCGTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig54472:1236..1674+

>mRNA_H-elongata_contig54472.12829.1 ID=mRNA_H-elongata_contig54472.12829.1|Name=mRNA_H-elongata_contig54472.12829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig54472:1236..1674+ (Himanthalia elongata Himel1 dioecious)
GCCTTCTTCTCCCTCCCCCCTCGACAACACCAATACCGCTACACTTCAAT
TGTAGCGTATTATAGTATAATGTGTACCACGCGCGCCGGACGCGGCACGG
GGATGTGTCCTCTCAACGGCTTCGAAGCAGCAGCGGCAGCAGCAGCAGCA
GCAGCACTAAGTCGTCTAGCAATCACCCTTCACTTTGATATCAGATATGA
GAGAGAGCTAGCCAACCCACCAACCAACCAACCAGTCAACCGATCTATTG
ATTTTTCGATCGGGTTTGACGGGATTGAGATGGTGGAGGTATATGAGAGT
ACAGTACAGTACCGACACCTTCACACTGAATCCTATACCACATATTTCCA
CTACAGCTTAATCCAATCCAATCCAATCCATTCCAACTCAATCCAATCTC
CGTCTTGTACGAAAATCGTTTGTCTTCCGTCGCCGTCAGCCTTCTTCTCC
CTCCCCCCTCGACAACACCAATACCGCTACACTTCAATTGTAGCGTATTA
TAGTATAATGTGTACCACGCGCGCCGGACGCGGCACGGGGATGTGTCCTC
TCAACGGCTTCGAAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCACTAAGT
CGTCTAGCAATCACCCTTCACTTTGATATCAGATATGAGAGAGAGCTAGC
CAACCCACCAACCAACCAACCAGTCAACCGATCTATTGATTTTTCGATCG
GGTTTGACGGGATTGAGATGGTGGAGGTATATGAGAGTACAGTACAGTAC
CGACACCTTCACACTGAATCCTATACCACATATTTCCACTACAGCTTAAT
CCAATCCAATCCAATCCATTCCAACTCAATCCAATCTCCGTCTTGTACGA
AAATCGTTTGTCTTCCGTCGCCGTCA
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