mRNA_H-elongata_contig54413.12821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54413.12821.1
Unique NamemRNA_H-elongata_contig54413.12821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54413.12821.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.890e-41
Identity = 144/173 (83.24%), Postives = 153/173 (88.44%), Query Frame = 1 
Query:   40 DELHGIGRLTFSPGSILEEVYEGEFCRGVKHGRGVYVYPKGSGLVXXXXXXXXXXXXXXLLRFEDGSFYKGQFRKEKKHGTGCMVWADGSQYLGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNQVVGTKGRFTLLTGLAHDDRVHLRVFGY 558
            DE+HG GRLT  PGSILEEVY+G+F RG+KHG GVYVY KG GLVXXXXXXXXXXXXXXLLRF D SFYKGQF +E+KHGTGCMVWA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+QV+GTKGRFTLLTG AH+DRVHLRVFGY
Sbjct:  787 DEIHGRGRLTICPGSILEEVYDGDFVRGIKHGNGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADDSFYKGQFHRERKHGTGCMVWAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 959
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BLAST of mRNA_H-elongata_contig54413.12821.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.980e-25
Identity = 127/167 (76.05%), Postives = 133/167 (79.64%), Query Frame = 1 
Query:   58 GRLTFSPGSILEEVYEGEFCRGVKHGRGVYVYPKGSGLVXXXXXXXXXXXXXXLLRFEDGSFYKGQFRKEKKHGTGCMVWADGSQYLGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNQVVGTKGRFTLLTGLAHDDRVHLRVFGY 558
            GRLT  PGSILEEVY+G+F RG+KHG GVYVY KG GLVXXXXXXXXXXXXXXLLRF D SFYK                    Q    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+QV+GTKGRFTLLTG AH+DRVHLRVFGY
Sbjct:  193 GRLTICPGSILEEVYDGDFVRGIKHGHGVYVYRKGDGLVXXXXXXXXXXXXXXLLRFADXSFYKXXXXXXXXXXXXXXXXXXXXQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQVLGTKGRFTLLTGPAHEDRVHLRVFGY 359
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BLAST of mRNA_H-elongata_contig54413.12821.1 vs. uniprot
Match: A0A7S1FPP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPP1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.010e-7
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:    1 YANGDIYRGDFSHDELHGIGRLTFSPGSILEEVYEGEFCRGVKHGRGVYVYPKGSGLVXXXXXXXXXXXXXXLLRFEDGSF 243
            Y +G +Y G+F  D   G G +TF PG++LEE Y+G +    +HG+G   Y + SG   XXXXXXXXXXXXX L F+DGSF
Sbjct:    5 YTDGTVYDGNFLDDVRCGRGTMTFCPGTVLEEKYDGSWENDRRHGQGRQTYDQRSGRTYXXXXXXXXXXXXXRLDFKDGSF 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54413.12821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWY6_ECTSI5.890e-4183.24MORN repeat variant family protein n=1 Tax=Ectocar... [more]
A0A6H5KQH2_9PHAE6.980e-2576.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1FPP1_9STRA3.010e-751.85Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54413contigH-elongata_contig54413:517..2662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue7.8e-36
Seed eggNOG ortholog2880.D7FWY6
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons5
Model size561
Cds size561
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54413.12821.1prot_H-elongata_contig54413.12821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54413 517..2662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.7722132-CDS-H-elongata_contig54413:516..5681622930886.7722132-CDS-H-elongata_contig54413:516..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 517..568 +
1691679612.001459-CDS-H-elongata_contig54413:516..5681691679612.001459-CDS-H-elongata_contig54413:516..568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 517..568 +
1622930886.7912974-CDS-H-elongata_contig54413:923..10421622930886.7912974-CDS-H-elongata_contig54413:923..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 924..1042 +
1691679612.0139806-CDS-H-elongata_contig54413:923..10421691679612.0139806-CDS-H-elongata_contig54413:923..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 924..1042 +
1622930886.8137448-CDS-H-elongata_contig54413:1525..16771622930886.8137448-CDS-H-elongata_contig54413:1525..1677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 1526..1677 +
1691679612.0237668-CDS-H-elongata_contig54413:1525..16771691679612.0237668-CDS-H-elongata_contig54413:1525..1677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 1526..1677 +
1622930886.8349154-CDS-H-elongata_contig54413:1968..21021622930886.8349154-CDS-H-elongata_contig54413:1968..2102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 1969..2102 +
1691679612.0342424-CDS-H-elongata_contig54413:1968..21021691679612.0342424-CDS-H-elongata_contig54413:1968..2102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 1969..2102 +
1622930886.856262-CDS-H-elongata_contig54413:2558..26621622930886.856262-CDS-H-elongata_contig54413:2558..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 2559..2662 +
1691679612.0439079-CDS-H-elongata_contig54413:2558..26621691679612.0439079-CDS-H-elongata_contig54413:2558..2662Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54413 2559..2662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54413.12821.1

>prot_H-elongata_contig54413.12821.1 ID=prot_H-elongata_contig54413.12821.1|Name=mRNA_H-elongata_contig54413.12821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
YANGDIYRGDFSHDELHGIGRLTFSPGSILEEVYEGEFCRGVKHGRGVYV
YPKGSGLVYDGDWEDGLRHGEGLLRFEDGSFYKGQFRKEKKHGTGCMVWA
DGSQYLGKWVNNLRHGEGTLLHADKSIFKGQFWLDKKNGSGTLTSLDGNC
YEGEWQDNQVVGTKGRFTLLTGLAHDDRVHLRVFGY*
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mRNA from alignment at H-elongata_contig54413:517..2662+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54413.12821.1 ID=mRNA_H-elongata_contig54413.12821.1|Name=mRNA_H-elongata_contig54413.12821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2146bp|location=Sequence derived from alignment at H-elongata_contig54413:517..2662+ (Himanthalia elongata Himel1 dioecious)
TATGCCAACGGGGACATATACCGTGGCGACTTTTCCCACGACGAACTTCA
CGGTAAGCCCCATGCTGCTGTTAAATTTGGTTTCATGGTTTGGTTGTCTC
CCTGCCTTCCTCTTTGCTTACTACGAAGTGTATATTAATGGTTAAAAAAC
TTGGTTCCACTGCGAGTTTGTGTAATCATGCGTATACCGTTGAGGAAAGT
CGTTACGCTTGGGTCGCTGGATGGCTTCCTTTTGTGAGCAATAAGCGCGC
ACAGCAAACGGCTCTTGTTCTCCACAGAGAACAAACAATTAATTGTTGAT
CGTGCCGCGTCCGTAGGAGGTTTTGTTCTATGAATATCTTCTTGGTTTGT
TCCACTTCTCTCATTATGCCATTTCTGATATAAGCCATGATCATGATGTA
TCCAAAGGTATCGGAAGATTGACTTTTTCCCCCGGATCCATCCTGGAGGA
GGTGTACGAGGGGGAGTTCTGTCGGGGAGTGAAGCACGGCCGTGGCGTCT
ATGTATACCCCAAGGGCAGCGGATTGGTTAGTTCTGAGGGCGTCAGGGAG
GGCAAGATGAACAGCTTGTGCTTCCATTTGCAATATCGATTGTGAAACGC
CACGCAGCAGGAAATGACTAATAATAATAGTTTACAGGCGAGCATGCAGC
AAAATCTTTGATTGCATGTATTCTGGTTTGATCGTGTCAGACGTGACTTC
AACCCCGTGGAGGTGCATTTTCAGGTCTGGGTGACCCGTGCGAAAGGAAG
CATAAGCTAGACGTCGAGGACATACCGGGCAAAATGATGCGGGCTACCCC
CTTTGAAACCTAGGAGGAAAGGAGAAAAGGAGACAATACACGCAGCTTCA
TCAGTTCTCACCTAGCCTTTGTTTTTGATTCTCTCCAAGACGAAGCATTT
CACGATCTATATGGATTCAAACGCGCATGTGCATCGAAGCGGCATTCACG
CCTGTCTATATCTCATTCGCTTTGCCTACTAAAACGGTTGCACTCACGAA
TGAATATAGGTATATGACGGCGACTGGGAAGACGGCTTGCGGCATGGCGA
GGGCCTACTACGCTTTGAGGATGGTTCCTTTTATAAAGGTCAATTTAGAA
AGGAAAAAAAGCACGGCACCGGATGTATGGTGTGGGCAGATGGCTCGCAG
TATCTGGGGAAGTGAGTGTAGTACCCTCTACAGTGGAGCATGTCGTATCA
AACATTATATTCTCGGGAAACGGTAGGAGGCAGATATCTCCATTCAGCGC
AATGAGTGAGGGTAAAAAAAGCACAGCGCGATGAGTATCGAAAACGCGTT
GCTGCAATATAACCCTTCATTGCACGAGAACATCCTAGATATTCAGATCA
CACGCGTTTCTCTCCTGGGCCCGACTCGACGTTGAACCATAACCCTTGCA
AAACTTGGGGGCGATAATGCGGTTCAAACTTACATCGCGTGTGGTCGGGC
AGGTGGGTGAATAACCTGAGGCATGGCGAAGGGACACTTTTGCACGCGGA
CAAAAGCATCTTCAAGGGTCAGTTTTGGCTTGACAAGAAAAACGGGTCGG
GCACTCTGACCTCTCTCGACGGCAACTGCTATGAAGGTGAATTGTGAGTG
AGGCGCTTGGCAGACGGGACGACTTTGGTCGATCCTTCTCAACGGCAGAT
CATTACAACGGGCGCGGTTTGGCGACCACAGTAAACACGATACGTAAAGC
ATAGAAAACTTCGAAAGCGCTGGGGAAGGAGTGGGCTTGAGAGCACGGAC
GACACGCAGTCACTTCTCTGCTCTTATTAGATACCATGTTTGTCAAGAGA
CCAAGAATGAATGCAGTCTTGCCTTGAGCTTAACGCTGACAATAGCCGAC
TCTTGATTCGACGGTGATAGCGCCGCCCCCACCCTCTTTTTTCATTGTTC
TTCGAAAGTCCTAGTCGGAAACTTTGTACGAAGCGACGAAAACTACGCAA
CAACAGGAGGCTCAAAGGGCTTTATGATGCATGCCTTACTTTGCTCGATT
CGCTGCGTCCGGCATTATTGTGTGTTTTGGTCATGAGCACAGGGGAGTGG
CAAGACAACCAAGTCGTGGGCACAAAAGGCAGATTCACTCTCCTCACGGG
CCTGGCGCATGATGATAGAGTTCACCTTCGCGTGTTTGGTTACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54413:517..2662+

>mRNA_H-elongata_contig54413.12821.1 ID=mRNA_H-elongata_contig54413.12821.1|Name=mRNA_H-elongata_contig54413.12821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig54413:517..2662+ (Himanthalia elongata Himel1 dioecious)
TATGCCAACGGGGACATATACCGTGGCGACTTTTCCCACGACGAACTTCA
CGTATGCCAACGGGGACATATACCGTGGCGACTTTTCCCACGACGAACTT
CACGGTATCGGAAGATTGACTTTTTCCCCCGGATCCATCCTGGAGGAGGT
GTACGAGGGGGAGTTCTGTCGGGGAGTGAAGCACGGCCGTGGCGTCTATG
TATACCCCAAGGGCAGCGGATTGGTATCGGAAGATTGACTTTTTCCCCCG
GATCCATCCTGGAGGAGGTGTACGAGGGGGAGTTCTGTCGGGGAGTGAAG
CACGGCCGTGGCGTCTATGTATACCCCAAGGGCAGCGGATTGGTATATGA
CGGCGACTGGGAAGACGGCTTGCGGCATGGCGAGGGCCTACTACGCTTTG
AGGATGGTTCCTTTTATAAAGGTCAATTTAGAAAGGAAAAAAAGCACGGC
ACCGGATGTATGGTGTGGGCAGATGGCTCGCAGTATCTGGGGAAGTATAT
GACGGCGACTGGGAAGACGGCTTGCGGCATGGCGAGGGCCTACTACGCTT
TGAGGATGGTTCCTTTTATAAAGGTCAATTTAGAAAGGAAAAAAAGCACG
GCACCGGATGTATGGTGTGGGCAGATGGCTCGCAGTATCTGGGGAAGTGG
GTGAATAACCTGAGGCATGGCGAAGGGACACTTTTGCACGCGGACAAAAG
CATCTTCAAGGGTCAGTTTTGGCTTGACAAGAAAAACGGGTCGGGCACTC
TGACCTCTCTCGACGGCAACTGCTATGAAGGTGGGTGAATAACCTGAGGC
ATGGCGAAGGGACACTTTTGCACGCGGACAAAAGCATCTTCAAGGGTCAG
TTTTGGCTTGACAAGAAAAACGGGTCGGGCACTCTGACCTCTCTCGACGG
CAACTGCTATGAAGGGGAGTGGCAAGACAACCAAGTCGTGGGCACAAAAG
GCAGATTCACTCTCCTCACGGGCCTGGCGCATGATGATAGAGTTCACCTT
CGCGTGTTTGGTTACTGAGGGAGTGGCAAGACAACCAAGTCGTGGGCACA
AAAGGCAGATTCACTCTCCTCACGGGCCTGGCGCATGATGATAGAGTTCA
CCTTCGCGTGTTTGGTTACTGA
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