mRNA_H-elongata_contig54393.12816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54393.12816.1
Unique NamemRNA_H-elongata_contig54393.12816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: D7FSP8_ECTSI (Multidrug Resistance associated Protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP8_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.710e-48
Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAFGFA+GG+ AAVALH RLL  V+ KP++FFD+TPSGR+VNRFSRDAFSVDDPL FHLN+LLAQ +GL AT  VLS+T+P+L  +F PLG VYA+LQRYYR SSRELRRLDSTSR
Sbjct: 1088 VRAFGFAFGGVRAAVALHRRLLTHVLGKPSAFFDITPSGRVVNRFSRDAFSVDDPLPFHLNVLLAQAAGLSATAVVLSSTSPVLAALFLPLGWVYAKLQRYYRSSSRELRRLDSTSR 1204
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A6H5JKN8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.350e-47
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAFGFA+GG+ AAVALH RLL+ V+ KP++FFDVTPSGR+VNRFSRDAFSVDDPL FHLN+LLAQ +GL  T  VLS+ +P+L  +F PLG VYA+LQRYYR SSRELRRLDSTSR
Sbjct:  570 VRAFGFAFGGVRAAVALHRRLLSHVLGKPSAFFDVTPSGRVVNRFSRDAFSVDDPLPFHLNVLLAQAAGLSVTAVVLSSASPVLAALFLPLGWVYAKLQRYYRSSSRELRRLDSTSR 686
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5F9DSU1_RABIT (ATP binding cassette subfamily C member 10 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DSU1_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 342
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  959 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1072
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: G1SLM6_RABIT (ATP binding cassette subfamily C member 10 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1SLM6_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 342
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  985 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1098
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5F9DN59_RABIT (ATP binding cassette subfamily C member 10 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DN59_RABIT)

HSP 1 Score: 127 bits (320), Expect = 7.590e-32
Identity = 68/114 (59.65%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDS 342
            LRA  FA G + AA ALHHRLL+RV+  P +FFD TP+GR++NRFS D   VDD L F LNILLA  +GLL  + VL +  P L+L+  PL VVY R+QR+YR SSRELRRL S
Sbjct:  985 LRAVLFAAGTLQAAAALHHRLLHRVLMAPVTFFDCTPTGRVLNRFSSDVACVDDSLPFILNILLANAAGLLGLLAVLGSGLPWLLLLLPPLSVVYYRVQRHYRASSRELRRLGS 1098
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A7R9YYW4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YYW4_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 9.900e-32
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    4 RAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTS 348
            RA  FA+ G++AA  +H RLL+ V+  P +FFD+ PSGRI+NRFS D   +DD L F LNILLA  + L   + V+  T+P L+L+  P+GVVY RLQ YYR +SRE+RRLDS +
Sbjct:  126 RAVSFAYAGLAAAQRMHARLLHAVLCAPMAFFDLVPSGRIINRFSSDTSKIDDTLPFILNILLANCANLAGLLLVMVATSPTLLLLLLPMGVVYRRLQLYYRSTSREVRRLDSVA 240
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5J5BDX0_9ASTE (Uncharacterized protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5BDX0_9ASTE)

HSP 1 Score: 125 bits (314), Expect = 4.880e-31
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAF FA+GG+ AAV +H+RLL ++I  P +FFD TPSGRI+NRFS D +++DD L F LNILLA   GLL    VLS    + +L+  P   +Y++LQ YYR +SRELRRLDS SR
Sbjct:  966 VRAFSFAFGGLRAAVQVHNRLLQKLINAPVNFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIALVLSYVQVMFLLLLLPFWYIYSKLQFYYRSTSRELRRLDSVSR 1082
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A5D2CEX4_GOSDA (Uncharacterized protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A5D2CEX4_GOSDA)

HSP 1 Score: 124 bits (311), Expect = 1.180e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  297 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 413
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BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A8J6D899_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D899_9ROSI)

HSP 1 Score: 124 bits (311), Expect = 1.240e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  934 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 1050
[Close]
BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Match: A0A1U8PEY7_GOSHI (ABC transporter C family member 13-like isoform X1 n=5 Tax=Gossypium TaxID=3633 RepID=A0A1U8PEY7_GOSHI)

HSP 1 Score: 124 bits (311), Expect = 1.240e-30
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:    1 LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAFSVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQRYYRCSSRELRRLDSTSR 351
            +RAF FA+GG+ AAV +H+ LLN+VI  PA FFD TP GRI+NRFS D +++DD L F LNILLA   GLL    VLS      +L+  P   +Y++LQ +YR +SRELRRLDS SR
Sbjct:  972 VRAFSFAFGGLKAAVQVHNTLLNKVINAPAQFFDQTPGGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLFPFWYIYSKLQFFYRSTSRELRRLDSVSR 1088
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54393.12816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSP8_ECTSI2.710e-4874.36Multidrug Resistance associated Protein 1 n=1 Tax=... [more]
A0A6H5JKN8_9PHAE1.350e-4773.50ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A5F9DSU1_RABIT7.590e-3259.65ATP binding cassette subfamily C member 10 n=2 Tax... [more]
G1SLM6_RABIT7.590e-3259.65ATP binding cassette subfamily C member 10 n=2 Tax... [more]
A0A5F9DN59_RABIT7.590e-3259.65ATP binding cassette subfamily C member 10 n=1 Tax... [more]
A0A7R9YYW4_9CHLO9.900e-3253.04Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A5J5BDX0_9ASTE4.880e-3155.56Uncharacterized protein n=2 Tax=Nyssaceae TaxID=42... [more]
A0A5D2CEX4_GOSDA1.180e-3055.56Uncharacterized protein n=4 Tax=Gossypium TaxID=36... [more]
A0A8J6D899_9ROSI1.240e-3055.56Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A1U8PEY7_GOSHI1.240e-3055.56ABC transporter C family member 13-like isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54393contigH-elongata_contig54393:583..1755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D7FSP8
KEGG koko:K05674
KEGG TC3.A.1.208
KEGG Pathwayko02010,map02010
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal peptide
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.157654-CDS-H-elongata_contig54393:582..7801622930886.157654-CDS-H-elongata_contig54393:582..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54393 583..780 +
1691679611.7700326-CDS-H-elongata_contig54393:582..7801691679611.7700326-CDS-H-elongata_contig54393:582..780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54393 583..780 +
1622930886.1752825-CDS-H-elongata_contig54393:1602..17551622930886.1752825-CDS-H-elongata_contig54393:1602..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54393 1603..1755 +
1691679611.7825413-CDS-H-elongata_contig54393:1602..17551691679611.7825413-CDS-H-elongata_contig54393:1602..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54393 1603..1755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54393.12816.1prot_H-elongata_contig54393.12816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54393 583..1755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54393.12816.1

>prot_H-elongata_contig54393.12816.1 ID=prot_H-elongata_contig54393.12816.1|Name=mRNA_H-elongata_contig54393.12816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
LRAFGFAWGGISAAVALHHRLLNRVIAKPASFFDVTPSGRIVNRFSRDAF
SVDDPLAFHLNILLAQVSGLLATMGVLSTTNPLLILIFAPLGVVYARLQR
YYRCSSRELRRLDSTSR
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mRNA from alignment at H-elongata_contig54393:583..1755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54393.12816.1 ID=mRNA_H-elongata_contig54393.12816.1|Name=mRNA_H-elongata_contig54393.12816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1173bp|location=Sequence derived from alignment at H-elongata_contig54393:583..1755+ (Himanthalia elongata Himel1 dioecious)
CTCAGGGCATTCGGGTTTGCGTGGGGGGGAATCTCGGCCGCCGTCGCGCT
GCATCACCGACTGCTGAACCGAGTCATCGCCAAGCCGGCGTCGTTCTTCG
ACGTGACTCCGTCGGGGAGGATCGTGAACCGCTTCAGCAGGGATGCCTTC
AGCGTGGACGACCCCCTGGCCTTCCACCTCAACATTCTGCTGGCTCAGGT
AGGTGGACTCTGGAGCAGTACACAGGGTGACCCCTATCGTACATTTTGTA
GATATATGATATTTACGCACGAAATTGTGTTGTGTGAGGCCTATCAACAT
GCGTACCGTTCGGCCTCAAGGTCTTGCCGAGGAAAGGTAGTGTTGTCGCG
ATATCAACCCACCTGTCGCTTGTACCGATGCCAATCGAGCACCTCGTTCG
CTTTGGCGTTAACCGTGACAGCTATCCGTTTCAATCGGGATCTTTCCGCG
GAGGCGTTTCGGTCCACCGGAAGTTGGTCCATATTCAGCCAAACGTTCTT
TGGTTCCGCTGGGAGTTGTTCCATATTCCACCGAAACGTTTTCCATTCCG
GCCTAGAAGGTGTTCCGTTCCGTCGAAAAGTGTTCCGTTCCGGCTTCGTT
GCGTTGTTGGGCAGCGCCTACTTTCGGACTGGCGGGCGCTGTGACACAAT
GACACACCAAATGCGACTGAACGGCGAACCGTCACGCTGGACGGTCAAGG
GAATCGTCTTTTCTGCCTTTGCTTGTCGTTCGGCAAATTAGTACTGCACG
AAGCACCGAACATTGTAGATCGTTGGAAAATGCCCTGTACCAAGGAAGAT
CCGGTAAAGTTCCCCTTCTAAACGTATCTCATTCATATAGTAACTATTGT
GTGCTACGCCTGCTTGCCGAATGATCAGCGAGGGCTGCAGCAGCATGTGG
AAGATTTAATACAGCTAAGGCTTCTCTGTTGACCATATCTCATTATTATA
TTTATTAGAGCGTGCTACGCGCGCTTTCCCGCTCGCCGGCACTCTCGCTC
CCTCCCTTGCCTCGCCGCAGGTGTCTGGACTGCTTGCGACAATGGGCGTG
TTGAGCACGACAAACCCTCTACTGATTCTCATCTTCGCTCCGCTGGGGGT
CGTGTACGCCAGATTGCAGAGGTACTACCGGTGCAGCAGCCGCGAGCTGC
GGCGCTTGGACTCCACGTCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig54393:583..1755+

>mRNA_H-elongata_contig54393.12816.1 ID=mRNA_H-elongata_contig54393.12816.1|Name=mRNA_H-elongata_contig54393.12816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig54393:583..1755+ (Himanthalia elongata Himel1 dioecious)
CTCAGGGCATTCGGGTTTGCGTGGGGGGGAATCTCGGCCGCCGTCGCGCT
GCATCACCGACTGCTGAACCGAGTCATCGCCAAGCCGGCGTCGTTCTTCG
ACGTGACTCCGTCGGGGAGGATCGTGAACCGCTTCAGCAGGGATGCCTTC
AGCGTGGACGACCCCCTGGCCTTCCACCTCAACATTCTGCTGGCTCAGCT
CAGGGCATTCGGGTTTGCGTGGGGGGGAATCTCGGCCGCCGTCGCGCTGC
ATCACCGACTGCTGAACCGAGTCATCGCCAAGCCGGCGTCGTTCTTCGAC
GTGACTCCGTCGGGGAGGATCGTGAACCGCTTCAGCAGGGATGCCTTCAG
CGTGGACGACCCCCTGGCCTTCCACCTCAACATTCTGCTGGCTCAGGTGT
CTGGACTGCTTGCGACAATGGGCGTGTTGAGCACGACAAACCCTCTACTG
ATTCTCATCTTCGCTCCGCTGGGGGTCGTGTACGCCAGATTGCAGAGGTA
CTACCGGTGCAGCAGCCGCGAGCTGCGGCGCTTGGACTCCACGTCAAGGG
TGTCTGGACTGCTTGCGACAATGGGCGTGTTGAGCACGACAAACCCTCTA
CTGATTCTCATCTTCGCTCCGCTGGGGGTCGTGTACGCCAGATTGCAGAG
GTACTACCGGTGCAGCAGCCGCGAGCTGCGGCGCTTGGACTCCACGTCAA
GG
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