mRNA_H-elongata_contig54383.12811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54383.12811.1
Unique NamemRNA_H-elongata_contig54383.12811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.240e-40
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MRFVKNVGLGFKTPK A+EGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH+VSKYRR
Sbjct:   60 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 130
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BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 2.810e-35
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MRF KN+GLGFKTPK A  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHYV+KYRR
Sbjct:   33 KGMRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRR 103
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.530e-34
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MRF KN+GLGFKTPK A EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHY+SKYRR
Sbjct:   35 KGMRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRR 104
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S4UCS4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UCS4_GUITH)

HSP 1 Score: 118 bits (295), Expect = 8.060e-33
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MRFVKNVGLG KTP AA E  YVDKKCPFTG+VSIRGRILKG VISAGKM  TI++RRDYLHY+ KYRR
Sbjct:   31 KPMRFVKNVGLGIKTPDAAIENPYVDKKCPFTGNVSIRGRILKGQVISAGKMKRTIIVRRDYLHYIRKYRR 101
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 116 bits (291), Expect = 1.270e-31
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHY+ KYRR
Sbjct:   35 KPMRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRR 104
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A813AIS7_9DINO (RPS11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AIS7_9DINO)

HSP 1 Score: 116 bits (290), Expect = 4.620e-31
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 1 
Query:    1 GKNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            GK++R+ KNVGLGFKTPKAA EGTY+DKKCPFTG+V+IRGRILKG+VIS  KM  TIVIRRD+L YVSKYRR
Sbjct:   78 GKSVRYYKNVGLGFKTPKAAIEGTYIDKKCPFTGNVAIRGRILKGVVIST-KMNRTIVIRRDFLRYVSKYRR 148
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A7S3PX81_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX81_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.060e-30
Identity = 56/71 (78.87%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K MRF ++VGLG KTP AA EGTYVDKKCPFTG+V+IRGRILKGLVIS  KM NT+VIRRDYLHY++KYRR
Sbjct:   38 KPMRFTRSVGLGIKTPDAAIEGTYVDKKCPFTGNVAIRGRILKGLVIS-NKMKNTVVIRRDYLHYITKYRR 107
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A812UUF3_SYMMI (RPS11 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UUF3_SYMMI)

HSP 1 Score: 112 bits (281), Expect = 1.500e-30
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   10 MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            MRF K+VGLGFKTPKAA EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL YV KYRR
Sbjct:    1 MRFYKSVGLGFKTPKAASEGSYVDKKCPFTGNVSIRGRILKGIVVST-KMKRTVVIRRDYLQYVRKYRR 68
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A0F7SWC9_PHARH (40s ribosomal protein s11 n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SWC9_PHARH)

HSP 1 Score: 115 bits (289), Expect = 2.560e-30
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            KN R+ K+VGLGFKTP  A  GTY+DKKCPFTGDVSIRGRIL G V+SAGKMT TIVIRRDYLHY+ KY R
Sbjct:  130 KNKRWYKDVGLGFKTPAEAINGTYIDKKCPFTGDVSIRGRILTGKVVSAGKMTRTIVIRRDYLHYIPKYSR 200
[Close]
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Match: A0A6U5GP88_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GP88_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.150e-30
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    4 KNMRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYVSKYRR 216
            K+ R+VK++GLGFKTP AA EG YVDKKCPFTG+VSIRG+ILKG+V+S  KM N +V+RRDYLHY+SKYRR
Sbjct:   39 KSFRYVKDIGLGFKTPVAASEGNYVDKKCPFTGNVSIRGQILKGVVVST-KMKNNVVVRRDYLHYISKYRR 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54383.12811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI4.240e-4094.37Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA2.810e-3584.51Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA9.530e-3483.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4UCS4_GUITH8.060e-3380.28Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4WCA2_9DINO1.270e-3180.28Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813AIS7_9DINO4.620e-3179.17RPS11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S3PX81_9STRA1.060e-3078.87Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A812UUF3_SYMMI1.500e-3079.71RPS11 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A0F7SWC9_PHARH2.560e-3077.4640s ribosomal protein s11 n=1 Tax=Phaffia rhodozym... [more]
A0A6U5GP88_9STRA4.150e-3073.24Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54383contigH-elongata_contig54383:279..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-01_006720.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54383.12811.1prot_H-elongata_contig54383.12811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54383 279..681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.6092753-CDS-H-elongata_contig54383:278..3651622930885.6092753-CDS-H-elongata_contig54383:278..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54383 279..365 -
1691679611.5470018-CDS-H-elongata_contig54383:278..3651691679611.5470018-CDS-H-elongata_contig54383:278..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54383 279..365 -
1622930885.6311226-CDS-H-elongata_contig54383:558..6811622930885.6311226-CDS-H-elongata_contig54383:558..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54383 559..681 -
1691679611.5603244-CDS-H-elongata_contig54383:558..6811691679611.5603244-CDS-H-elongata_contig54383:558..681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54383 559..681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.6524255-UTR-H-elongata_contig54383:681..6901622930885.6524255-UTR-H-elongata_contig54383:681..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54383 682..690 -
1691679611.572083-UTR-H-elongata_contig54383:681..6901691679611.572083-UTR-H-elongata_contig54383:681..690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54383 682..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54383.12811.1

>prot_H-elongata_contig54383.12811.1 ID=prot_H-elongata_contig54383.12811.1|Name=mRNA_H-elongata_contig54383.12811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRFVKNVGLGFKTPKAAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKM
TNTIVIRRDYLHYVSKYRR*
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mRNA from alignment at H-elongata_contig54383:279..690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54383.12811.1 ID=mRNA_H-elongata_contig54383.12811.1|Name=mRNA_H-elongata_contig54383.12811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at H-elongata_contig54383:279..690- (Himanthalia elongata Himel1 dioecious)
GGAAAGAACATGCGTTTCGTGAAGAACGTCGGTCTTGGATTCAAGACCCC
CAAAGCGGCAAAGGAGGGCACCTACGTTGACAAGAAGTGCCCGTTCACTG
GCGACGTATCCATCCGCGGCCGTATCCTGAAGGTGACTTTTTCAATATTT
GCGCGCAGTCGTTAGCGTCAATTCCATCAGACCCTGAGATGTACATTTAT
ATGACACGTAGCCTCCGCGGAAATGATAAAAACAATAAAAAGAGTTGGAA
GCTTCTGGGTGGAAAATCTAATCCAGGGTCGTCCTCTTAACCTTGATTTT
GGTGGTGTGTGCTGTACTAACCCAGGGTTTAGTCATCTCCGCCGGCAAGA
TGACGAACACCATCGTCATCCGCCGCGACTATCTCCACTACGTCTCGAAG
TACCGCCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54383:279..690-

>mRNA_H-elongata_contig54383.12811.1 ID=mRNA_H-elongata_contig54383.12811.1|Name=mRNA_H-elongata_contig54383.12811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig54383:279..690- (Himanthalia elongata Himel1 dioecious)
ATGCGTTTCGTGAAGAACGTCGGTCTTGGATTCAAGACCCCCAAAGCGGC
AAAGGAGGGCACCTACGTTGACAAGAAGTGCCCGTTCACTGGCGACGTAT
CCATCCGCGGCCGTATCCTGAAGATGCGTTTCGTGAAGAACGTCGGTCTT
GGATTCAAGACCCCCAAAGCGGCAAAGGAGGGCACCTACGTTGACAAGAA
GTGCCCGTTCACTGGCGACGTATCCATCCGCGGCCGTATCCTGAAGGGTT
TAGTCATCTCCGCCGGCAAGATGACGAACACCATCGTCATCCGCCGCGAC
TATCTCCACTACGTCTCGAAGTACCGCCGGTGAGGTTTAGTCATCTCCGC
CGGCAAGATGACGAACACCATCGTCATCCGCCGCGACTATCTCCACTACG
TCTCGAAGTACCGCCGGTGA
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