mRNA_H-elongata_contig5436.12806.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6H5KVR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR4_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.780e-58 Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
MEYWVRTP CK AK KH+ ++D + +SREQ ETVFTCPFTG +RDI+LERNMFPYDVPTDVEHWTLWSR DL + EME FV+ WAAENH HAVEWECDNNEG+RSIDW+HVHVF
Sbjct: 310 MEYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRDIVLERNMFPYDVPTDVEHWTLWSRRDLPKDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVF 425
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: D8LK74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK74_ECTSI) HSP 1 Score: 194 bits (492), Expect = 1.530e-57 Identity = 88/117 (75.21%), Postives = 100/117 (85.47%), Query Frame = 1
Query: 1 QMEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
QM+YWVRTP CK AK KH+ ++D + +SREQ ETVFTCPFTG +R I+LERNMFPYDVPTDVEHWTLWSR+DL EME FV+ WAAENH HAVEWECDNNEG+RSIDW+HVHVF
Sbjct: 314 QMDYWVRTPNCKAAKSKHIDFIDDVAYSREQFIEETVFTCPFTGARRAIVLERNMFPYDVPTDVEHWTLWSRKDLPNDEMEAFVQGWAAENHPHAVEWECDNNEGERSIDWFHVHVF 430
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A836CLJ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLJ2_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.240e-33 Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQ---ETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
ME+WVR CK K +H+ ++D SREQ +TVFT P TG RD +LE NMFPY P DVEHWTLWSR D+ E++ +V +W N H W D+N GDRSI W+HVHV+
Sbjct: 133 MEFWVRGEECKRLKTEHLDFIDSHYSSREQFIEDTVFTDPMTGEVRDTVLEPNMFPYQTPPDVEHWTLWSRSDMTHEEIQAWVTEWLMVNKPHVRRWNYDDNAGDRSIYWFHVHVY 248
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6A3KAU7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KAU7_9STRA) HSP 1 Score: 101 bits (252), Expect = 8.050e-25 Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
++YW RT C E K HM +D + SRE+ + T T + LE NMFPYD P +EHWTLWSR ++D AE+EE+V W EN H W D N RSID +HVHV+
Sbjct: 63 LQYWDRTDECLERKWAHMDMVDDLFESREELILAT---TLSHTETALEPNMFPYDTPDGIEHWTLWSRHEMDNAEIEEYVCDWLRENAPHVERWNYDENLS-RSIDIFHVHVY 171
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A7S3HKL5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKL5_9STRA) HSP 1 Score: 107 bits (266), Expect = 8.160e-25 Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
+E+W RT CKEAKL+H +D M SRE + T T + DI+LE NMFPY P VEH+TLWS EDL ++ FV++W + H W+ D+N G+RSID +HVHVF
Sbjct: 352 LEWWERTDHCKEAKLRHTDRIDHMCGSRESLVLKT---TLWKEDIVLEPNMFPYYTPYGVEHYTLWSVEDLTHEQIVSFVDRWLYRHMPHVRRWQYDDNSGERSIDLFHVHVF 461
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A7S3HJF2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJF2_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.180e-24 Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
+E+W RT CKEAKL+H +D M SRE + T T + DI+LE NMFPY P VEH+TLWS EDL ++ FV++W + H W+ D+N G+RSID +HVHVF
Sbjct: 487 LEWWERTDHCKEAKLRHTDRIDHMCGSRESLVLKT---TLWKEDIVLEPNMFPYYTPYGVEHYTLWSVEDLTHEQIVSFVDRWLYRHMPHVRRWQYDDNSGERSIDLFHVHVF 596
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A3M6VCZ3_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCZ3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.240e-24 Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
+EYW RT C E K HM +D+M SRE+ + T T ++ +LE NMFPYD P + HWTLWSR +++ E+EEFV W EN W D N RSID +HVHV+
Sbjct: 6 VEYWDRTDECLERKWAHMDMVDRMFNSREELILAT---TLHHKETVLEPNMFPYDTPKGISHWTLWSRHEMNHTEIEEFVCNWIRENAPQVERWNYDENLS-RSIDIFHVHVY 114
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A0P1AIQ1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIQ1_PLAHL) HSP 1 Score: 100 bits (249), Expect = 1.810e-24 Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 1 QMEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
++EYW R+ C + K HM +DK SRE+ + T T + +LERNMFPYD P+ +EHWTLWSR ++ + E+E+FV W +N L W D N RSID +HVHV+
Sbjct: 57 RLEYWGRSHECLQRKWAHMEAIDKSFDSREELILAT---TLSNEESVLERNMFPYDTPSGIEHWTLWSRHEMKEIEIEQFVWNWLRKNALQVDSWNYDENMS-RSIDIFHVHVY 166
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: K3X7P6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7P6_GLOUD) HSP 1 Score: 98.6 bits (244), Expect = 3.460e-24 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
++YW R+ C E K HM +D+++ SRE+ + T T I+LE NMFPY P +EHWTLWSR ++ E+E +V W EN H W D N RSID +HVHV+
Sbjct: 8 IDYWDRSEECLERKWDHMDMIDEVSPSREEHILST---TLRDEHIILEPNMFPYTTPDGIEHWTLWSRNEMGDQEVEAYVSSWITENAPHVKSWNFDEN-SSRSIDLFHVHVY 116
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Match: A0A6U1PGM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PGM4_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.880e-24 Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 4 MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNMFPYDVPTDVEHWTLWSREDLDQAEMEEFVEKWAAENHLHAVEWECDNNEGDRSIDWYHVHVF 342
+EYW RT C K HM ++D SRE F + RD +LE NMFPYD P D+ HWT+W R ++ + E+ ++VE W + + + VEW D+N G+RSID YHVHV+
Sbjct: 69 IEYWDRTDDCINKKWDHMDFIDANFDSREN---FILETALLNRDHMLEPNMFPYDTPEDILHWTMWCRWEMSEEELIKYVENWM-KKYPYIVEWNYDDNAGERSIDLYHVHVY 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5436.12806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5436.12806.1 >prot_H-elongata_contig5436.12806.1 ID=prot_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp MEYWVRTPACKEAKLKHMAYMDKMTFSREQETVFTCPFTGVQRDILLERNback to top mRNA from alignment at H-elongata_contig5436:10301..11055+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5436.12806.1 ID=mRNA_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=755bp|location=Sequence derived from alignment at H-elongata_contig5436:10301..11055+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5436:10301..11055+ >mRNA_H-elongata_contig5436.12806.1 ID=mRNA_H-elongata_contig5436.12806.1|Name=mRNA_H-elongata_contig5436.12806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig5436:10301..11055+ (Himanthalia elongata Himel1 dioecious)back to top |