mRNA_H-elongata_contig54348.12805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54348.12805.1
Unique NamemRNA_H-elongata_contig54348.12805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54348.12805.1 vs. uniprot
Match: D7FH14_ECTSI (Hypothetical F-box and leucine rich repeat containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH14_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 2.160e-87
Identity = 214/303 (70.63%), Postives = 237/303 (78.22%), Query Frame = 1 
Query:    1 QIGPQLLSLRLMGARIFEGAIFRDMVCRFHNMRYLSLDGTFYVKSDAMSALAMAGQQLQQASAWLGLVCLCGFRQLKDEDVQLLLDSCPILTALSVADCTSLGALILSSRQLRTLXXXXXXXXXXXXXXXXXXXXXXXXXXTKLPDNAVESLVATCKSLEHLGLKGCSSLATPSIQSANLKSLDLSLCGRLTTCSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTLTLSCTKLEYVNLRGSYKLASSNIQSRCPALSVVDLCGTSINPEAFARSDGQGEGDVIQGGAPLNWHTY 909
            +IGPQL+SL+L GARI     FRDMV  F +MRYLSLDGTFYVKS A++ALA AGQQLQ+ S       LCGFRQLKDEDVQ LLDSCP L+ LSVADCT+LG+L+L S QL+T XXXXXXXXXXXXXXXXXXXXXXXXXX   PD AVESL+ +C +LEHLGLKGCS+L +P+IQSA L+SL              XXXXXXXXXXXXXXXXXXXXXXXXX         +  LTL+C KL Y NLRGSYKL S+NIQSRCP LSVVDLCGT INPEAF RSDG+GEGDVIQGGAPL WHTY
Sbjct:   88 EIGPQLVSLKLTGARIIRDDTFRDMVRTFESMRYLSLDGTFYVKSQAINALAKAGQQLQEVS-------LCGFRQLKDEDVQFLLDSCPSLSVLSVADCTTLGSLVLRSTQLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDCAVESLMGSCLALEHLGLKGCSALVSPTIQSAKLRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISLDLSMLGVKNLTLNCNKLVYANLRGSYKLESANIQSRCPGLSVVDLCGTKINPEAFVRSDGEGEGDVIQGGAPLPWHTY 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54348.12805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH14_ECTSI2.160e-8770.63Hypothetical F-box and leucine rich repeat contain... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54348contigH-elongata_contig54348:103..3795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.9
Seed ortholog evalue1.1e-71
Seed eggNOG ortholog2880.D7FH14
KEGG koko:K10268
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size2456
Cds size879
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.8242145-UTR-H-elongata_contig54348:102..16461622930884.8242145-UTR-H-elongata_contig54348:102..1646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54348 103..1646 -
1691679611.285527-UTR-H-elongata_contig54348:102..16461691679611.285527-UTR-H-elongata_contig54348:102..1646Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54348 103..1646 -
1622930884.9175673-UTR-H-elongata_contig54348:3762..37951622930884.9175673-UTR-H-elongata_contig54348:3762..3795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54348 3763..3795 -
1691679611.3489928-UTR-H-elongata_contig54348:3762..37951691679611.3489928-UTR-H-elongata_contig54348:3762..3795Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54348 3763..3795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.840121-CDS-H-elongata_contig54348:1646..17901622930884.840121-CDS-H-elongata_contig54348:1646..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 1647..1790 -
1691679611.2961383-CDS-H-elongata_contig54348:1646..17901691679611.2961383-CDS-H-elongata_contig54348:1646..1790Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 1647..1790 -
1622930884.8576977-CDS-H-elongata_contig54348:2003..21981622930884.8576977-CDS-H-elongata_contig54348:2003..2198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 2004..2198 -
1691679611.3069057-CDS-H-elongata_contig54348:2003..21981691679611.3069057-CDS-H-elongata_contig54348:2003..2198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 2004..2198 -
1622930884.8708403-CDS-H-elongata_contig54348:2488..26671622930884.8708403-CDS-H-elongata_contig54348:2488..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 2489..2667 -
1691679611.3160625-CDS-H-elongata_contig54348:2488..26671691679611.3160625-CDS-H-elongata_contig54348:2488..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 2489..2667 -
1622930884.8823235-CDS-H-elongata_contig54348:3066..32591622930884.8823235-CDS-H-elongata_contig54348:3066..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 3067..3259 -
1691679611.3252065-CDS-H-elongata_contig54348:3066..32591691679611.3252065-CDS-H-elongata_contig54348:3066..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 3067..3259 -
1622930884.8944852-CDS-H-elongata_contig54348:3594..37621622930884.8944852-CDS-H-elongata_contig54348:3594..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 3595..3762 -
1691679611.3360815-CDS-H-elongata_contig54348:3594..37621691679611.3360815-CDS-H-elongata_contig54348:3594..3762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54348 3595..3762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54348.12805.1prot_H-elongata_contig54348.12805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54348 1647..3762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54348.12805.1

>prot_H-elongata_contig54348.12805.1 ID=prot_H-elongata_contig54348.12805.1|Name=mRNA_H-elongata_contig54348.12805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MGARIFEGAIFRDMVCRFHNMRYLSLDGTFYVKSDAMSALAMAGQQLQQA
SAWLGLVCLCGFRQLKDEDVQLLLDSCPILTALSVADCTSLGALILSSRQ
LRTLDVSRCMHISEMSLDMPSLTRLDASWCTKLPDNAVESLVATCKSLEH
LGLKGCSSLATPSIQSANLKSLDLSLCGRLTTCSTSCQSLTQLSVEMCMG
LVSLALDLPMMKGLDLSMLGIVTLTLSCTKLEYVNLRGSYKLASSNIQSR
CPALSVVDLCGTSINPEAFARSDGQGEGDVIQGGAPLNWHTY*
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mRNA from alignment at H-elongata_contig54348:103..3795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54348.12805.1 ID=mRNA_H-elongata_contig54348.12805.1|Name=mRNA_H-elongata_contig54348.12805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3693bp|location=Sequence derived from alignment at H-elongata_contig54348:103..3795- (Himanthalia elongata Himel1 dioecious)
CAGATCGGTCCCCAGCTCCTGTCGCTGAGGTTGATGGGAGCGCGTATCTT
TGAGGGCGCTATCTTCCGGGACATGGTCTGTCGATTTCATAATATGCGAT
ACCTCTCCCTTGACGGCACCTTCTACGTGAAGAGCGACGCCATGAGCGCC
CTTGCCATGGCCGGGCAGCAGCTGCAGCAGGCGAGCGCCTGGCTTGGTCT
GGTCTGGTCTGGTCTGGTACAGCCCGCTTAAAAGTAATATGGAGTATAGA
GTATAGACTTGAAGCCCGTGTGCTGATACGAGTGTTAAGTGTGTTTGTTT
TGTGTGTTGTATAGTGTTGTTGTGGTTGCCCTAGGGAGGCCTTGCTCTCT
GGAATACTAATGGGCAGTAACACTACGATGTAATACGATGTAATGCGATG
CCAAATCCTTTTATATCATTCATTCTCTTTCCCTTTCTCTCTATCATCCC
CTCTCTCTTTCTCCATCATTCCCTCTCTCTTTCTTTATCATTATCTCTCT
CTTTCTCTATTCCTGTATACTGTCGATTCCTTCCAGGTTTGCCTTTGCGG
GTTCCGGCAGCTCAAGGACGAGGACGTGCAGCTCCTGCTGGACTCCTGCC
CTATCCTGACGGCGTTGTCAGTCGCCGACTGCACGTCCCTCGGGGCGTTA
ATTCTCTCCTCGCGCCAGCTCCGCACCCTCGACGTGTCCCGCTGCATGCA
CATAAGCGAGATGTCTCTCGACATGCCCTGTAAGTCAAATCATGGATATT
CATTTCAACATAAGTAGTAGTGTTAATAGTAGTAGTTGTAATATCACTAA
CATTTACAATTTTCCTGTTTGTCCTCCCTTCAAACGTTTCGTGTTATATT
CTACTCTTTTACTGCCAAAGTGTTTAGTTATTGAAAGAATTCGAGCGGTA
ACGCCGGCTTCGACTCGAGTGCAGGAAATCTCTCCCCCNNNNNNNNNNGG
GTCACGCCGGCTGTTCCGCGGGGGGCAAAATAACCCCCCCCCCCCCCCCC
CCCTCTTTTCTTTGTGCGAAAAGCATAACAGAAGAAATGTTCTCACTGAC
GTCACACACACACACACACACTGGTCCGGTCTCTATTTCCTTCATCGCTC
ATTTATTTCGTATTAACACGGATGCCAGCGTTAACCCGACTGGACGCCAG
CTGGTGCACCAAGCTCCCCGACAACGCGGTGGAGTCGCTCGTGGCGACCT
GTAAGTCGCTGGAGCACCTCGGGCTGAAGGGGTGCTCTTCTCTAGCGACT
CCAAGCATACAATCCGCTAATCTCAAGAGCCTCGACCTTTCGCTCTGTGG
ACGGCTGGTGAGCGGAAGAGGGGAAGGAACGGAACGGAGCGCCCATTTGA
ATGACTCGTCGGTGTCGGAGGCCTCTGCTCGTAATCTTGCTAGTTCGCTT
GCTGGCTAGCACGTTGATGGTTGGTGGTCATTTATCATCGATGCGTGGGT
GCGAGTACTTGGGAGGTGGGGAGGGGGGTGCCTTCAAGAACCTGACGATG
CGCTCCGTACCCCCGTGCGTGTCGTCGAATCCCTCGCTCTCGTCCTTGAC
CGACGCGCCTCTCATGTATCGCGGGGTCACGCGCGCACACACTCAAGACC
ACGTGCAGTACGTCGTGTCAGTCGCTGACGCAGCTGTCGGTTGAAATGTG
CATGGGACTGGTTTCGCTGGCCCTGGATCTCCCGATGATGAAGGGTCTCG
ACCTGAGCATGCTCGGCATCGTGACCCTGACCCTCAGCTGCACAAAGCTG
GAGTACGTGAACCTCCGCGGGAGCTACAAGCTGGCATCATCCGTGAGTCT
ATTGTGCCAGGAGAAAGGGCGGGGGGGGGGGAGCGGGGAAGAAGTTGGTA
AGGATGCCGCCGTAATTTCCCAGCGTGTTTCTGGACATGTTTCGCTTGGT
TTTCGCCGGCGGCGTCTGGGTAAGCCATAATTCCAACGGAATATCTGACG
CGAACTTTGTTGAACGTCGGCCTCGATTCTTCCCTCGATTTCTCCGAAAT
TACAGAACATCCAGAGCCGGTGCCCTGCGCTGAGCGTGGTGGATCTATGC
GGAACCAGCATTAATCCGGAGGCGTTTGCTCGATCTGATGGACAGGGGGA
AGGGGACGTTATCCAGGGGGGTGCACCCTTAAATTGGCACACGTATTAAA
ACTTGACGTGAGGGTGCTTTTTCCGTCATCGGGATGAACGGTGTGTTAGG
TTGCTTGAGTGCTGTCGGTCATCAGAGGCCGGAATGCTGACAAATAAAGG
TGGTACCGGCACAGACCCTGACGTTGCTTGGGCTTGTTTTGTTTTTTACA
TTTTCTTTGTAAGATTCCCACCCCAAACACGCCTCTGTAAAGAAAGACGG
GCTGCGCATAACGGGGAGATTTTGAAGTTGGACGTATCCGCCGCTGGGGA
ATCTTTGTTCAATGCTCGAATGGGTCTATCCCTTCAGCTTAGCCGTAAAA
GTCAGCTCTTAGGACACTCCCCAGCTCTCTGCCCCCACGTGGAGCTGTCA
CGAAACGCAAACTCCGTACTATGCTCTATCGTTCACCACGACCCGATCGT
CTTCGCGCGATCCTTGCGGAGACGAGGAGGAAATGGCACACAAGCGACAA
CACATAAGACTTGTAAGAAGGCGGATCGATTATTTTCCACGCCTGCCTCT
ACGGCAGGTCAGAAGTTTTGTCGATGTACTCGTTTTCTCTGTCATGGTAG
TTGCCATCGAGCTGGTCTTGGCAACGGCACAAGGTGTCCTGCGGCAGACG
GCAACAAGGAAGGGAGCAATCGGTCACGGTTCAGGGTCGGGAAGTTCACA
CGCAGGGGGGAGGAGCGTGAATTTCGTTGCAACTCCTAGGTTCCCCCTTC
CATAAAACGCCATCTTGCAAATCATGGGGGTGGGGGTTGGAGGCCGGACA
AAAAGCCTCCTCCCCCCCCCTCCCCAAGTTTGGGCCGAACGTGTTAGCTT
TGTGACCTATACTCTTTGTAAAAATAGCTTACTTGACATTCCTGGGGTTT
TTTAATACAAAGGGATGAAAACGTGTGGTGCCCCCCCCCCTTGTCATATA
GGGGTAGCCTGGGAAATTTCGTTCGTTGGCCAAGGGGATTTAGACTTTAT
ATTTTTGACCATAATCCTCTCAGCATAGCCCTAAAGGACATACGGGGGAC
TCGCCGGCCCTGGTTGTTTTCTGCGTCCTTTGATAATTAATACAGTATCC
AAAAGTGAGTCTTCGACCATTTCTGCTCTGAGGTTCCATCGCCGGAGAGA
ACGAAAAAAGCAGAAAGTAAATAGTGGGGTTCACCCTTATATTGTGGGGA
GCTTCAGTGTACGTCAAAATGCCAAAATCTCCAGTGTATGTTTGTTTGGG
GCGAGACGAGGTAAACATCGAATCAAGTGGACGTGGGAAATGTTTAACGA
TTAGCCCACAACGTTTTTCTCTCTTTTTTTCTCTCACTGATTTCGTAAAA
ACAAAGAAACTAAAGCTTACGGATGACACGCTGATAGGGGGTGCACACTT
TGGTTCTCGAGAGCGCGCCGTAAAGAGAAAACGTATGATAACGCGTTGCA
AGGTGTTGGAGCTGGCGGAAGCCTTCCAGTCGCTCGTCAAAATACATCGC
TGGTCTTGTTTGGGATTTGAGGAGAACAACCTGGACGCGCTTACTGCTTG
ATTATGGTAAGGAGACTCAATGAGAGACCCAACAAGGTGGACA
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Coding sequence (CDS) from alignment at H-elongata_contig54348:103..3795-

>mRNA_H-elongata_contig54348.12805.1 ID=mRNA_H-elongata_contig54348.12805.1|Name=mRNA_H-elongata_contig54348.12805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig54348:103..3795- (Himanthalia elongata Himel1 dioecious)
ATGGGAGCGCGTATCTTTGAGGGCGCTATCTTCCGGGACATGGTCTGTCG
ATTTCATAATATGCGATACCTCTCCCTTGACGGCACCTTCTACGTGAAGA
GCGACGCCATGAGCGCCCTTGCCATGGCCGGGCAGCAGCTGCAGCAGGCG
AGCGCCTGGCTTGGTCTGATGGGAGCGCGTATCTTTGAGGGCGCTATCTT
CCGGGACATGGTCTGTCGATTTCATAATATGCGATACCTCTCCCTTGACG
GCACCTTCTACGTGAAGAGCGACGCCATGAGCGCCCTTGCCATGGCCGGG
CAGCAGCTGCAGCAGGCGAGCGCCTGGCTTGGTCTGGTTTGCCTTTGCGG
GTTCCGGCAGCTCAAGGACGAGGACGTGCAGCTCCTGCTGGACTCCTGCC
CTATCCTGACGGCGTTGTCAGTCGCCGACTGCACGTCCCTCGGGGCGTTA
ATTCTCTCCTCGCGCCAGCTCCGCACCCTCGACGTGTCCCGCTGCATGCA
CATAAGCGAGATGTCTCTCGACATGCCCTGTTTGCCTTTGCGGGTTCCGG
CAGCTCAAGGACGAGGACGTGCAGCTCCTGCTGGACTCCTGCCCTATCCT
GACGGCGTTGTCAGTCGCCGACTGCACGTCCCTCGGGGCGTTAATTCTCT
CCTCGCGCCAGCTCCGCACCCTCGACGTGTCCCGCTGCATGCACATAAGC
GAGATGTCTCTCGACATGCCCTCGTTAACCCGACTGGACGCCAGCTGGTG
CACCAAGCTCCCCGACAACGCGGTGGAGTCGCTCGTGGCGACCTGTAAGT
CGCTGGAGCACCTCGGGCTGAAGGGGTGCTCTTCTCTAGCGACTCCAAGC
ATACAATCCGCTAATCTCAAGAGCCTCGACCTTTCGCTCTGTGGACGGCT
GCGTTAACCCGACTGGACGCCAGCTGGTGCACCAAGCTCCCCGACAACGC
GGTGGAGTCGCTCGTGGCGACCTGTAAGTCGCTGGAGCACCTCGGGCTGA
AGGGGTGCTCTTCTCTAGCGACTCCAAGCATACAATCCGCTAATCTCAAG
AGCCTCGACCTTTCGCTCTGTGGACGGCTGACCACGTGCAGTACGTCGTG
TCAGTCGCTGACGCAGCTGTCGGTTGAAATGTGCATGGGACTGGTTTCGC
TGGCCCTGGATCTCCCGATGATGAAGGGTCTCGACCTGAGCATGCTCGGC
ATCGTGACCCTGACCCTCAGCTGCACAAAGCTGGAGTACGTGAACCTCCG
CGGGAGCTACAAGCTGGCATCATCCACCACGTGCAGTACGTCGTGTCAGT
CGCTGACGCAGCTGTCGGTTGAAATGTGCATGGGACTGGTTTCGCTGGCC
CTGGATCTCCCGATGATGAAGGGTCTCGACCTGAGCATGCTCGGCATCGT
GACCCTGACCCTCAGCTGCACAAAGCTGGAGTACGTGAACCTCCGCGGGA
GCTACAAGCTGGCATCATCCAACATCCAGAGCCGGTGCCCTGCGCTGAGC
GTGGTGGATCTATGCGGAACCAGCATTAATCCGGAGGCGTTTGCTCGATC
TGATGGACAGGGGGAAGGGGACGTTATCCAGGGGGGTGCACCCTTAAATT
GGCACACGTATTAAAACATCCAGAGCCGGTGCCCTGCGCTGAGCGTGGTG
GATCTATGCGGAACCAGCATTAATCCGGAGGCGTTTGCTCGATCTGATGG
ACAGGGGGAAGGGGACGTTATCCAGGGGGGTGCACCCTTAAATTGGCACA
CGTATTAA
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