mRNA_H-elongata_contig54298.12801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54298.12801.1
Unique NamemRNA_H-elongata_contig54298.12801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: D7G066_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G066_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.700e-62
Identity = 95/125 (76.00%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECRFANSDGSFRREHYHCRVGDCVFTGK 375
            S R S RKK KN+VWSQFRKACDRCTDKKVRCDGSNP GGFK+CT C R G+ C+FGICRRSGPRD +GHKT A GVIMKR  FEKVT R G+CRT+ CRF N DGSF REH+HCRVGDC F GK
Sbjct:  503 SGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACIFGICRRSGPRDEHGHKTAAAGVIMKRNDFEKVTERLGQCRTKTCRFVNKDGSFWREHFHCRVGDCSFAGK 627
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BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: A0A6H5JPG2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPG2_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.990e-61
Identity = 95/125 (76.00%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECRFANSDGSFRREHYHCRVGDCVFTGK 375
            S R S RKK KN+VWSQFRKACDRCTDKKVRCDGSNP GGFK+CT C R G+ C+FGICRRSGPRD +GHKT A GVIMKR  FEKVT R G+CRT+ CRF N DGSF REH+HCRVGDC F GK
Sbjct:  752 SGRPSPRKKSKNLVWSQFRKACDRCTDKKVRCDGSNPTGGFKACTPCKRAGEACLFGICRRSGPRDAHGHKTAAAGVIMKRNDFEKVTERLGQCRTKTCRFVNKDGSFWREHFHCRVGDCSFAGK 876
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BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Match: D7FXA4_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.010e-40
Identity = 70/124 (56.45%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:    7 RKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRVGKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCR-TEECRFANSDGSFRREHYHCRVGDCVFTGK 375
            R+ SRKK K  VWSQ RKACDRCT KKVRCDG       + C  C RVG  C F ICRRSGPRD NGHKT  +G I+ R  +EKVT R G CR + +CRF ++DG  + EHYHCR   C +  K
Sbjct:   63 RRPSRKKTKKPVWSQLRKACDRCTSKKVRCDGK------EGCFQCSRVGATCHFSICRRSGPRDSNGHKTGTIGPIIPRDGYEKVTGRRGSCRISSQCRFVSADGQSKTEHYHCRAPGCEYASK 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54298.12801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G066_ECTSI4.700e-6276.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JPG2_9PHAE7.990e-6176.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FXA4_ECTSI1.010e-4056.45Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54298contigH-elongata_contig54298:1..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-05_003980.1
Exons4
Model size381
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54298.12801.1prot_H-elongata_contig54298.12801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54298 1..1828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.2129602-CDS-H-elongata_contig54298:0..871622930884.2129602-CDS-H-elongata_contig54298:0..87Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 1..87 +
1691679610.9576437-CDS-H-elongata_contig54298:0..871691679610.9576437-CDS-H-elongata_contig54298:0..87Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 1..87 +
1622930884.230786-CDS-H-elongata_contig54298:347..4541622930884.230786-CDS-H-elongata_contig54298:347..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 348..454 +
1691679610.9676652-CDS-H-elongata_contig54298:347..4541691679610.9676652-CDS-H-elongata_contig54298:347..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 348..454 +
1622930884.2455204-CDS-H-elongata_contig54298:913..9611622930884.2455204-CDS-H-elongata_contig54298:913..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 914..961 +
1691679610.977282-CDS-H-elongata_contig54298:913..9611691679610.977282-CDS-H-elongata_contig54298:913..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 914..961 +
1622930884.2621682-CDS-H-elongata_contig54298:1689..18281622930884.2621682-CDS-H-elongata_contig54298:1689..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 1690..1828 +
1691679610.9876962-CDS-H-elongata_contig54298:1689..18281691679610.9876962-CDS-H-elongata_contig54298:1689..1828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54298 1690..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54298.12801.1

>prot_H-elongata_contig54298.12801.1 ID=prot_H-elongata_contig54298.12801.1|Name=mRNA_H-elongata_contig54298.12801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
SSRKSSRKKQKNIVWSQFRKACDRCTDKKVRCDGSNPNGGFKSCTSCHRV
GKPCVFGICRRSGPRDINGHKTIAVGVIMKRGKFEKVTHRSGKCRTEECR
FANSDGSFRREHYHCRVGDCVFTGKK*
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mRNA from alignment at H-elongata_contig54298:1..1828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54298.12801.1 ID=mRNA_H-elongata_contig54298.12801.1|Name=mRNA_H-elongata_contig54298.12801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1828bp|location=Sequence derived from alignment at H-elongata_contig54298:1..1828+ (Himanthalia elongata Himel1 dioecious)
TCTTCGCGGAAGTCTTCGAGAAAGAAGCAGAAAAATATTGTGTGGTCTCA
ATTCCGCAAGGCCTGTGACCGGTGTACGGACAAGAAGGTGGGGCACCTTG
GTCCGATGTGACCCTAAAGAGTAGAAGTGAGATTGTGTGGCGAGTGTGCT
GGCATTTGCAACGTATTTCGATGACTATTCATCGCGCACTTATTCTTGGG
AGACATTTTGTATATTACCCTTGGATCAGGTAACGAGAAAAGCCATTTTC
TCTCCAGGCTCAAGAGCTTTACTCCTAGGTAATGAACTTATTTTACTTTG
TTAGCGCATAGTTGTTTTTTATTCGCTTTACGGGGATCTATATCCAGGTA
AGATGCGACGGGAGCAACCCTAATGGAGGGTTCAAATCCTGCACCTCGTG
TCATAGAGTCGGGAAACCCTGCGTGTTCGGCATCTGCCGCCGCTCGGGTC
CAAGGTAGGTCACCAATTTATTAACTATTTAGGACAAAAAAATAAGATTT
TTTCACAGCCCGAATATTTTTCTTTGTCTTTGACCGTTGCAAACCCTTCC
GTTTTGCATTTTGCGCTCTGGAAATCGGCAGTCACCTCACTCGGTGGGGG
TGGCGGAGGGGAGGGCTACTATCCACGCTTGATATGCTTGATAATTGCGT
AGATAGCAACCCAATCACACGTGTCGATTTTTTAATATTTCGATAAAATA
TGTTCCGCCCGTGTGGGTTGCGATGTCTGTGTTGCCCATGATTTCAAGAA
AGTGTGGGAGAAATAGAAAGCCCCCCTCCCTTTGGCGTATGGTGGTAAAT
TATCAATTACACCGTATATCGTTTCGGGTAGAGGCCAGCCATTTGCTCAT
CGTTTTTCAGAATTTTTTTACCCACCAGTCCAATCTTCACCTGCAACCGC
TCACCATACTCAGGGATATTAATGGGCACAAGACGATTGCCGTGGGTGTC
ATCATGAAAAGGTGCGAAAAACGAACTGTATCGCTGTGGGGTTGATAGGA
AAAAATTGAGTTCATGACTTCTGTGAGCGAGATCTGCAGTACACTGTCGG
CTGAAAGATCTATACCCTGCTCATTAAAGTATCCTTTTGTGTCGTGTGAT
ATTCGGGAGTGACCTCTCGTGTTCGAGTGGAGGCGCCGAAAAGAGTGCTG
TTACTTTCAATCGTCTTTTATTTCATCGTGCTATAGTTTCTATAGCTAGC
CCAACCATTTGCTGCTTTACTTCTAGCGTGATGTAAGGCTCCTCATCCTG
TGATTAATTTTTTTTTGAATTTCATGGTGCGATCGATGCCATCTTCGCCT
CGAAGAATCGAACGAGACAATCCCCGAGTGTTAGAGATTATCTGATTGTG
AAAGGTAGGGGAAAATCTATCGGGATGAAAGTGAAAACATTTATCTTGTA
TATCGTTGACATCACTTTATTAGATTCACTGAACTAGTGGTGGGTTACGA
GCAAACATTTAAGTTCTTAGGTTGTTTTTCTTGTATCACCCCTGGGCCAC
ATTTTCACTATATTTGCTTCCATTACAACGCAGTATTTTACGTCGTGACC
AGCCTAGCCCATATCCTGTATATTTTGCAGAGTCGTATAAACAAAAAATG
ATGCATACACCATATTCCTAACGGAAGAGCAACGGCGATCCGAGTGGCAC
GTTTCTTCTTTGTTTCACCGTTATCACACATCTGGGTAGAGGGAAATTTG
AGAAGGTCACTCACCGGTCGGGAAAGTGCCGCACTGAAGAATGCCGCTTC
GCCAACAGCGACGGGTCTTTCCGAAGGGAACACTACCACTGCAGGGTCGG
CGACTGTGTCTTCACCGGCAAGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54298:1..1828+

>mRNA_H-elongata_contig54298.12801.1 ID=mRNA_H-elongata_contig54298.12801.1|Name=mRNA_H-elongata_contig54298.12801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig54298:1..1828+ (Himanthalia elongata Himel1 dioecious)
TCTTCGCGGAAGTCTTCGAGAAAGAAGCAGAAAAATATTGTGTGGTCTCA
ATTCCGCAAGGCCTGTGACCGGTGTACGGACAAGAAGTCTTCGCGGAAGT
CTTCGAGAAAGAAGCAGAAAAATATTGTGTGGTCTCAATTCCGCAAGGCC
TGTGACCGGTGTACGGACAAGAAGGTAAGATGCGACGGGAGCAACCCTAA
TGGAGGGTTCAAATCCTGCACCTCGTGTCATAGAGTCGGGAAACCCTGCG
TGTTCGGCATCTGCCGCCGCTCGGGTCCAAGGTAAGATGCGACGGGAGCA
ACCCTAATGGAGGGTTCAAATCCTGCACCTCGTGTCATAGAGTCGGGAAA
CCCTGCGTGTTCGGCATCTGCCGCCGCTCGGGTCCAAGGGATATTAATGG
GCACAAGACGATTGCCGTGGGTGTCATCATGAAAAGGGATATTAATGGGC
ACAAGACGATTGCCGTGGGTGTCATCATGAAAAGAGGGAAATTTGAGAAG
GTCACTCACCGGTCGGGAAAGTGCCGCACTGAAGAATGCCGCTTCGCCAA
CAGCGACGGGTCTTTCCGAAGGGAACACTACCACTGCAGGGTCGGCGACT
GTGTCTTCACCGGCAAGAAGTGAAGGGAAATTTGAGAAGGTCACTCACCG
GTCGGGAAAGTGCCGCACTGAAGAATGCCGCTTCGCCAACAGCGACGGGT
CTTTCCGAAGGGAACACTACCACTGCAGGGTCGGCGACTGTGTCTTCACC
GGCAAGAAGTGA
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