mRNA_H-elongata_contig54296.12800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54296.12800.1
Unique NamemRNA_H-elongata_contig54296.12800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Match: A0A6H5L1C1_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1C1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.720e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQ 111
            QID FT+PTLK FLKSRG++  GKKGDLV RV+QALQ
Sbjct:  589 QIDRFTVPTLKSFLKSRGMSATGKKGDLVARVQQALQ 625
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BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Match: A0A0M0JFS2_9EUKA (X-ray repair cross-complementing protein 6 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFS2_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQK 114
            +++SFT+PTLK F K+ GL +GGKKGDLV RV   L+K
Sbjct:  637 RLESFTIPTLKEFCKANGLPVGGKKGDLVARVHDWLEK 674
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54296.12800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1C1_9PHAE2.720e-975.68SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0M0JFS2_9EUKA1.420e-660.53X-ray repair cross-complementing protein 6 n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54296contigH-elongata_contig54296:3247..3369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930884.158526-CDS-H-elongata_contig54296:3246..33691622930884.158526-CDS-H-elongata_contig54296:3246..3369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54296 3247..3369 +
1691679610.9477139-CDS-H-elongata_contig54296:3246..33691691679610.9477139-CDS-H-elongata_contig54296:3246..3369Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54296 3247..3369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54296.12800.1prot_H-elongata_contig54296.12800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54296 3247..3369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54296.12800.1

>prot_H-elongata_contig54296.12800.1 ID=prot_H-elongata_contig54296.12800.1|Name=mRNA_H-elongata_contig54296.12800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
QIDSFTLPTLKGFLKSRGLALGGKKGDLVDRVRQALQKEG*
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mRNA from alignment at H-elongata_contig54296:3247..3369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54296.12800.1 ID=mRNA_H-elongata_contig54296.12800.1|Name=mRNA_H-elongata_contig54296.12800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig54296:3247..3369+ (Himanthalia elongata Himel1 dioecious)
CAGATTGATTCCTTCACACTGCCGACCCTAAAAGGTTTCCTCAAGAGCCG
CGGATTAGCCTTGGGGGGAAAGAAGGGGGACTTGGTGGATCGCGTCCGAC
AGGCTCTTCAAAAGGAGGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig54296:3247..3369+

>mRNA_H-elongata_contig54296.12800.1 ID=mRNA_H-elongata_contig54296.12800.1|Name=mRNA_H-elongata_contig54296.12800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig54296:3247..3369+ (Himanthalia elongata Himel1 dioecious)
CAGATTGATTCCTTCACACTGCCGACCCTAAAAGGTTTCCTCAAGAGCCG
CGGATTAGCCTTGGGGGGAAAGAAGGGGGACTTGGTGGATCGCGTCCGAC
AGGCTCTTCAAAAGGAGGGATGACAGATTGATTCCTTCACACTGCCGACC
CTAAAAGGTTTCCTCAAGAGCCGCGGATTAGCCTTGGGGGGAAAGAAGGG
GGACTTGGTGGATCGCGTCCGACAGGCTCTTCAAAAGGAGGGATGA
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