mRNA_H-elongata_contig54167.12787.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54167.12787.1
Unique NamemRNA_H-elongata_contig54167.12787.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54167.12787.1 vs. uniprot
Match: D7FMR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR0_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.150e-41
Identity = 84/113 (74.34%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:    1 FIPQAEKAKHEEMAAFQRAGELALQNIDKSRQATKEDGLRQHRAFSHQRQRITRLRMQEVDQERARNQLESERREAKLKAEKEALSRACAAEAEELGNAWAMVEAAAGFVPPG 339
            ++ + E+AK  EMAAFQRAGE ALQN+++SR+AT +DGLR H+AF +QRQRITRLRM+EVDQERARNQ+ESE+REA+LKAEKEALSRAC  EA ELGNAWA+VEAAAGF P G
Sbjct:  281 YLSEVEEAKRAEMAAFQRAGEAALQNMERSRKATTDDGLRLHKAFLNQRQRITRLRMEEVDQERARNQVESEKREARLKAEKEALSRACEQEAAELGNAWAVVEAAAGFAPEG 393
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BLAST of mRNA_H-elongata_contig54167.12787.1 vs. uniprot
Match: A0A6H5KY16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY16_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.910e-11
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:  202 QLESERREAKLKAEKEALSRACAAEAEELGNAWAMVEAAAGFVPPG 339
            Q+ESE+REA+LKAEKEALSRAC  E  ELGNAWA+VEAAAGF P G
Sbjct:    6 QVESEKREARLKAEKEALSRACEQEEAELGNAWAVVEAAAGFAPEG 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54167.12787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMR0_ECTSI1.150e-4174.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY16_9PHAE2.910e-1178.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54167contigH-elongata_contig54167:370..1722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_001260.1
Exons3
Model size453
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54167.12787.1prot_H-elongata_contig54167.12787.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54167 370..1722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.629021-CDS-H-elongata_contig54167:369..4651622930882.629021-CDS-H-elongata_contig54167:369..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 370..465 +
1691679610.128484-CDS-H-elongata_contig54167:369..4651691679610.128484-CDS-H-elongata_contig54167:369..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 370..465 +
1622930882.6499321-CDS-H-elongata_contig54167:982..10601622930882.6499321-CDS-H-elongata_contig54167:982..1060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 983..1060 +
1691679610.1364813-CDS-H-elongata_contig54167:982..10601691679610.1364813-CDS-H-elongata_contig54167:982..1060Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 983..1060 +
1622930882.66966-CDS-H-elongata_contig54167:1443..17221622930882.66966-CDS-H-elongata_contig54167:1443..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 1444..1722 +
1691679610.1441371-CDS-H-elongata_contig54167:1443..17221691679610.1441371-CDS-H-elongata_contig54167:1443..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54167 1444..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54167.12787.1

>prot_H-elongata_contig54167.12787.1 ID=prot_H-elongata_contig54167.12787.1|Name=mRNA_H-elongata_contig54167.12787.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
FIPQAEKAKHEEMAAFQRAGELALQNIDKSRQATKEDGLRQHRAFSHQRQ
RITRLRMQEVDQERARNQLESERREAKLKAEKEALSRACAAEAEELGNAW
AMVEAAAGFVPPGGGDYGEDGDNIHELTRAVVTPGGVGGEDRGGGATENG
E
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mRNA from alignment at H-elongata_contig54167:370..1722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54167.12787.1 ID=mRNA_H-elongata_contig54167.12787.1|Name=mRNA_H-elongata_contig54167.12787.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-elongata_contig54167:370..1722+ (Himanthalia elongata Himel1 dioecious)
TTCATTCCTCAGGCGGAGAAGGCAAAACACGAAGAGATGGCGGCGTTTCA
GCGCGCCGGGGAGCTCGCCCTCCAGAACATCGACAAATCTCGACAGGTCA
GGTCACGCGGACGTCGCATCCAACTTCTATTTCTATTTCTCGCTTTTCTC
CTCCGGCACGCAATGCGGTACATCGCGGTGTGTCGTATCATCGTATATGA
CGTCATGATACGATCGATGCCACTGTACAAGAGATTAAAAAAAGAGATAG
AAAGAGAGAGAGACTATGACAAAAGAGAGAGATAGTGCGTGCGTATACTG
TTATGATTTGCTTGTGAGATCGACGGAACTTTTTTTACCCCCCCTGAAAA
ACGGGCAGCAAAAACATGATCGAATCGGCAGCCTCGGCTTGCTGCTGGTT
TGATAGTCCCCACGGGATCTCTAGATTTTTATCCGGCGGCATTTGTCTGG
TGCCGCGGGTTTGGGGATCGCGAACTCTCGATGTACGGCAGAAGTGCGGG
TCGAGAGCGAGAATACGTTTGTATTTGAGTGGAAACCCTTCCTCTGCGCG
TTCCTTTCCGCTCCGTTCCTTTCCATTCTGTTCACGCCGTTTTCGGTAAT
CGTGTCTCTCAAGGCCACCAAAGAAGACGGCCTGAGACAGCACAGGGCCT
TCTCCCACCAGCGCCAGCGCATAACCCGCCTAAGGATGCAGGTGAGACGC
TCGGGGCAGATGCGCACAGCTCGCAGGATATAAATCGTAGTTCATCCGCT
ATATAAACTTCGTTCACTCGCTTCTACTCCTTCCTCACCCCCCCGCCATA
TTTGATGACGGCAGCAGAAGAGAAATTGCTGCCCACTCTTTCTACCAACT
CCCACAGCGATATATATATATATATATAGAGAGAGAGAGAGATAAATGTA
TATATTCATAACAGGCTATCGCTCTCGCCGGATTTAATCTCGCCTGATAT
CGAATATCTACCTGCAGCCTTTTTTCATGCAGGGGATCCTCTATCACTCG
CCCCCTCACCCGATATCCCTAATAATATTTTTAGAAAACCTTGAACTCAT
CTTTATCACATATCTTATTCACAGGAGGTAGACCAAGAGCGCGCCCGAAA
CCAGCTCGAAAGCGAAAGGAGAGAGGCGAAGCTCAAGGCCGAGAAGGAGG
CTCTCTCCCGCGCCTGCGCGGCGGAGGCCGAGGAGCTGGGAAACGCATGG
GCGATGGTCGAGGCGGCGGCGGGTTTCGTGCCGCCCGGGGGAGGCGACTA
CGGCGAGGACGGCGATAATATACACGAACTGACGAGAGCGGTGGTGACTC
CGGGGGGAGTGGGGGGGGAGGATAGGGGGGGTGGGGCGACCGAGAACGGG
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig54167:370..1722+

>mRNA_H-elongata_contig54167.12787.1 ID=mRNA_H-elongata_contig54167.12787.1|Name=mRNA_H-elongata_contig54167.12787.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig54167:370..1722+ (Himanthalia elongata Himel1 dioecious)
TTCATTCCTCAGGCGGAGAAGGCAAAACACGAAGAGATGGCGGCGTTTCA
GCGCGCCGGGGAGCTCGCCCTCCAGAACATCGACAAATCTCGACAGTTCA
TTCCTCAGGCGGAGAAGGCAAAACACGAAGAGATGGCGGCGTTTCAGCGC
GCCGGGGAGCTCGCCCTCCAGAACATCGACAAATCTCGACAGGCCACCAA
AGAAGACGGCCTGAGACAGCACAGGGCCTTCTCCCACCAGCGCCAGCGCA
TAACCCGCCTAAGGATGCAGGCCACCAAAGAAGACGGCCTGAGACAGCAC
AGGGCCTTCTCCCACCAGCGCCAGCGCATAACCCGCCTAAGGATGCAGGA
GGTAGACCAAGAGCGCGCCCGAAACCAGCTCGAAAGCGAAAGGAGAGAGG
CGAAGCTCAAGGCCGAGAAGGAGGCTCTCTCCCGCGCCTGCGCGGCGGAG
GCCGAGGAGCTGGGAAACGCATGGGCGATGGTCGAGGCGGCGGCGGGTTT
CGTGCCGCCCGGGGGAGGCGACTACGGCGAGGACGGCGATAATATACACG
AACTGACGAGAGCGGTGGTGACTCCGGGGGGAGTGGGGGGGGAGGATAGG
GGGGGTGGGGCGACCGAGAACGGGGAGGAGGTAGACCAAGAGCGCGCCCG
AAACCAGCTCGAAAGCGAAAGGAGAGAGGCGAAGCTCAAGGCCGAGAAGG
AGGCTCTCTCCCGCGCCTGCGCGGCGGAGGCCGAGGAGCTGGGAAACGCA
TGGGCGATGGTCGAGGCGGCGGCGGGTTTCGTGCCGCCCGGGGGAGGCGA
CTACGGCGAGGACGGCGATAATATACACGAACTGACGAGAGCGGTGGTGA
CTCCGGGGGGAGTGGGGGGGGAGGATAGGGGGGGTGGGGCGACCGAGAAC
GGGGAG
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