mRNA_H-elongata_contig54144.12783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54144.12783.1
Unique NamemRNA_H-elongata_contig54144.12783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 8.490e-72
Identity = 127/233 (54.51%), Postives = 158/233 (67.81%), Query Frame = 1 
Query:    1 TLSPKAVRSRSRSPARSPLIGTSSSS--MIRSELGGQGGRVGENEEPLVSPGRTPNTFSLDGRIFKVFRGRSTRKNPPRRKRSFELKKVFTRVPAKL--ILSIVVAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKPKYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAKGNA--QSLYELIYTGDKIVLNKDGKMKWSSPVKSLPKNLQPWPFG 681
            T+ PKAVRSRS+SP RSPL  T+S +  +I ++ G      GE   PL+SP R  +  +   R+ K    R     P  ++ S   +     +PAKL  +LS+V   VA  +F+G GDGP+LV RDA L PGDRLKGGQYISFCTSIIATGCKPKY  L  DGSLGVYGG+ P  + AKLW+AG GAKG    ++ YEL+YTGD++VLNKDGK+KWSS VKSLPKN++PWP  
Sbjct:    3 TIEPKAVRSRSKSPTRSPLARTASKTNLVIDTQAGHDAADKGE---PLISPARF-SPITAGKRLLKPSSPRKITMRPVVKEESMLSRYFSQSLPAKLSAVLSVVAIAVAAALFFGEGDGPKLVKRDAPLFPGDRLKGGQYISFCTSIIATGCKPKYFELGRDGSLGVYGGKSPYAQKAKLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLA 231
[Close]
BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Match: A0A836C7P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7P8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.650e-12
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 1 
Query:  286 ILSIVVAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKPKYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAK-GNAQSLYELI---YTGDKIVLNKDGKM--------KWSSPVKSLPKNL 663
            I++++VA+VA+V++Y    GP LV RD  +  G  L+ G+Y++ C    + GCKP Y  +  DG L +Y G  P     KLW +G GAK G  ++  E      T   I L ++GK+         W  PV  LP+ +
Sbjct:  153 IVAVLVALVAVVLYYLPAGGPYLVSRDVPMREGQSLRAGEYMTACVG--SAGCKPMYFEMAADGELALYSGTAPTDSRQKLWGSGTGAKKGGRRASSESDAPQMTPPPIALLREGKLFIMQGDAVVWKYPVNRLPREV 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54144.12783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0W8_ECTSI8.490e-7254.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C7P8_9STRA2.650e-1234.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54144contigH-elongata_contig54144:290..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-23_002020.1
Exons6
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54144.12783.1prot_H-elongata_contig54144.12783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54144 290..3485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.9893723-CDS-H-elongata_contig54144:289..3941622930881.9893723-CDS-H-elongata_contig54144:289..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 290..394 +
1691679609.9128077-CDS-H-elongata_contig54144:289..3941691679609.9128077-CDS-H-elongata_contig54144:289..394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 290..394 +
1622930882.0190175-CDS-H-elongata_contig54144:758..8901622930882.0190175-CDS-H-elongata_contig54144:758..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 759..890 +
1691679609.9237459-CDS-H-elongata_contig54144:758..8901691679609.9237459-CDS-H-elongata_contig54144:758..890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 759..890 +
1622930882.0544472-CDS-H-elongata_contig54144:1336..14311622930882.0544472-CDS-H-elongata_contig54144:1336..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 1337..1431 +
1691679609.9319615-CDS-H-elongata_contig54144:1336..14311691679609.9319615-CDS-H-elongata_contig54144:1336..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 1337..1431 +
1622930882.090637-CDS-H-elongata_contig54144:1993..21231622930882.090637-CDS-H-elongata_contig54144:1993..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 1994..2123 +
1691679609.9449005-CDS-H-elongata_contig54144:1993..21231691679609.9449005-CDS-H-elongata_contig54144:1993..2123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 1994..2123 +
1622930882.1195443-CDS-H-elongata_contig54144:2561..27201622930882.1195443-CDS-H-elongata_contig54144:2561..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 2562..2720 +
1691679609.9570642-CDS-H-elongata_contig54144:2561..27201691679609.9570642-CDS-H-elongata_contig54144:2561..2720Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 2562..2720 +
1622930882.142611-CDS-H-elongata_contig54144:3419..34851622930882.142611-CDS-H-elongata_contig54144:3419..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 3420..3485 +
1691679609.9687963-CDS-H-elongata_contig54144:3419..34851691679609.9687963-CDS-H-elongata_contig54144:3419..3485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54144 3420..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54144.12783.1

>prot_H-elongata_contig54144.12783.1 ID=prot_H-elongata_contig54144.12783.1|Name=mRNA_H-elongata_contig54144.12783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
TLSPKAVRSRSRSPARSPLIGTSSSSMIRSELGGQGGRVGENEEPLVSPG
RTPNTFSLDGRIFKVFRGRSTRKNPPRRKRSFELKKVFTRVPAKLILSIV
VAVVALVVFYGRGDGPRLVIRDAALSPGDRLKGGQYISFCTSIIATGCKP
KYLLLNNDGSLGVYGGRDPRVRNAKLWSAGMGAKGNAQSLYELIYTGDKI
VLNKDGKMKWSSPVKSLPKNLQPWPFGP*
back to top

mRNA from alignment at H-elongata_contig54144:290..3485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54144.12783.1 ID=mRNA_H-elongata_contig54144.12783.1|Name=mRNA_H-elongata_contig54144.12783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3196bp|location=Sequence derived from alignment at H-elongata_contig54144:290..3485+ (Himanthalia elongata Himel1 dioecious)
ACTTTGTCACCCAAGGCTGTGCGCAGCAGATCTCGCTCGCCCGCTAGATC
TCCACTGATCGGTACTTCTTCATCATCTATGATTCGTTCGGAGCTTGGTG
GGCAGGTATGCAACCCTTCCTTCTCGGGGTGTGTTTTCAAAAGCTTTCGT
ATGGACAAGCCAGTGAGAAACCCCGGATTCGGTGTTGGAATTCAAGCAGC
GCACTACTACTTGCGATTAGGTATATCATGTGTCAATGCGACGACCGGTT
GCCGTGCCGATACTACACACGCGAATGGCTCGTGCTTTGAGGTCATGCGG
CAGAGTTCATACTACGAGGCACGGGCTAATGGTTCCCCAAACCCATGTGA
CAGCTAGCAATCTGCGTACCGTCCATCTATCGGGTTCTCCTCTTCTACGC
CAATGTACCCACTTGCTTCGGTGTATTCAAATTTACACGACGCCACAATG
TATATTCGAGGCGCGGCAGGGAGGAAGAGTGGGGGAGAATGAGGAACCTT
TGGTATCCCCTGGGCGCACTCCCAATACATTCTCTTTGGATGGGCGAATA
TTCAAAGTTTTCAGGGGAAGATCTACACGAAAGAACCCTCCCAGGAGGAA
GGTATGTGTACGCACCGCACCAATCTACCTGAAATAGAAACCATACATGT
ATCATCAACTACACCCACTCTAATATATAACTTTTCCGAATGAAAAATGG
CCTTGATCTGACTTGGTGGCTATGTCGTGAATCGATCAAGCTTCATGGCT
CACTCCACGTGCACGGTAATGGTGCGCTTTATAGTGAGCTACGGCCTCGG
CTACACGGCGGCAGCAGCCCAGTGCTTGAAAAGGTTGTCACGCTGCCAGG
GCAAGATATCAGTCAGTGAATTTACGCGAGCTGCACAAACGTTGTACTAC
TCGTGATATATATTTTTTCAATACAGATGGGTGTGGTCGCATCCTCTTGT
CCATGTCGCTAGAATTAGGGTGCAGTGTAAAGCGCGACACGTCGCATCTT
GAAAATATAGCCGATTTCAGTCGCGTTGTCCACCCTGGCCTTCACAGCGA
AGCTTCGAGCTGAAGAAAGTATTCACCAGAGTGCCAGCCAAGCTCATCTT
GTCGATTGTGGTCGCCGTCGTCGCGCTCGTGGTCTTCTACGGGTGATGAA
TCATATCGACATAGTATATAATCTAAACGTCGAGAAGTGGTCGATCCCTC
GATTGGTAATAATGTATCGATGCACTGGTTCGTTGATCGATAAGTCGCGA
CACATAGTTTCAGGGCGTATGCCCTCCCCAGATGCCACGCTGACGAACCT
CGACGAGCAAAGCAATGGACAAACCGGCAAAAATCTCCGTCAGGACAATC
CCAGTATGACGGGGACACATTTGACATACCAGAGCATTCGTTTTTTCTTG
AGTCTTGTTCCGATGATCCACCGTGCTTGCATAGAAACCCGCCGTACAAT
ACGTTGTAGACATATTCACCAAGTAATGAAACCTTGCAAGGCTAACTGAA
TACCGAGTGGCTACGTCCTCAGGGCGCGTAGCTTAACTTTAACATAACGT
CGGTTGTAGAAATAGATTGGTTCGTTGACCACATGGTGCTGTGATGCGTT
TCCTTCTTCTAGGTTTCCTGGCTCAAGTTCGTGATGGCGCTGTGACTATT
ATAGAGCGATCGTTGTAACCGTAACCGTGCCTGGCTGTTATTTTTGTTCT
TCAGGCGGGGCGACGGCCCGAGGCTCGTGATACGTGATGCCGCGCTCAGC
CCAGGGGATCGATTGAAAGGCGGACAGTATATATCATTCTGCACCAGCAT
CATTGCCACCGGATGCAAGCCCAAGTATCTACTGGTATCTTGCCACATTC
CAGCGATGCTCACTTTAGTAGCGCTGGGTGACGATTTTGAGTTTAAAATC
CACTCAACACAGAGATGGAACTTAAAACAAAGAATTACATAATACATAGA
GAAATAGTTCGCATGTGTAATCTTTCCTCCTATTAATAGTAGTGGAGACT
CCCTACAAACTTGGTTGTAGCTGAAACGGATCATTTCCTTAGGGGTATTT
CCGGCAGCATTCTGTGTAATTTCGGTGAGTACGGGTTGGTGACTTCAGTC
GAGGCCTTGTCCACTCTGTTTGGTGAACCCCATGCGCAACAGTAGGAAAA
CGACGTAGTTCTTGATCTCTGAAGCGCACGCGGTTTGTACACTTGATCTC
CGAAGATTATGCGTTTTTTGGAGGTATCTCCGAACGCGTTTCTTTCCCTC
TGCCGATTTCTATTATGGACAGCTGAATAATGACGGCTCGCTCGGCGTGT
ACGGGGGCAGAGATCCACGAGTGCGTAATGCTAAGCTTTGGTCGGCAGGC
ATGGGTGCTAAAGGCAACGCGCAATCATTGTACGAGCTGATTTACACTGG
CGATAAAATCGTTCTTAACAAGGATGGAAAGGTCAGATACCATGAGTTCT
GGTATAATCAGGCGGTATTTTTGTATTTTTGACTCGGATTAATGAGTGAA
ATATGAAATACACTTGTAACAGCGGTAAATACACGTGCAACTCACGACAA
GTAGTGTAATGTGCAAAAAAAGAAAGTACGTGTAGTTTTTGGCACGTTGA
ACGTTCTAGGGTACCCCCCCCGCCTTCTCCCCCTTGAGCCGGTCGTTTCA
CATACGGCGCTCATTTGTGAACCAGCCCCATAGCTTATCTACCGGTTCTT
GGCTCATCACGTCGGGTCCAACCCGCGTTATGTGAGCCTCTTGGAAACTA
ACTGTAAAATGCGTGCCGCAGTTTTGTTCATAACTCACTATTCATAGCTC
AAAAGTAAAATATTAATGATAGTTGGTTCCCTGGATTGCACCTATGGTGC
AAGAAGGTGTGGATGTTCGGAGAGTTAGAATGAGCCTAAAGTCTTTTAAA
TAAAAATTAATAGTTTGTCTGCTAATAAACCGCTTGCTAATACCTTGATG
TTGGGAGGGGGGGATGCTGCTGTGAAACGAGAAAGATATAACGCGGGTGT
CCAGGTGGCGGCATGCCCGCCGTCATAGAATGCCATTCTCACTTCAAAAA
TATCGACAGAAGCCGGGAAGAGTACTTCCTGATAAGCTTCCTCCGTTGGG
ATTCACCTTTTTTGTGTACTCCATGCCCAGATGAAATGGTCGTCTCCTGT
GAAAAGCCTGCCCAAGAATTTGCAGCCCTGGCCCTTTGGACCCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig54144:290..3485+

>mRNA_H-elongata_contig54144.12783.1 ID=mRNA_H-elongata_contig54144.12783.1|Name=mRNA_H-elongata_contig54144.12783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig54144:290..3485+ (Himanthalia elongata Himel1 dioecious)
ACTTTGTCACCCAAGGCTGTGCGCAGCAGATCTCGCTCGCCCGCTAGATC
TCCACTGATCGGTACTTCTTCATCATCTATGATTCGTTCGGAGCTTGGTG
GGCAGACTTTGTCACCCAAGGCTGTGCGCAGCAGATCTCGCTCGCCCGCT
AGATCTCCACTGATCGGTACTTCTTCATCATCTATGATTCGTTCGGAGCT
TGGTGGGCAGGGAGGAAGAGTGGGGGAGAATGAGGAACCTTTGGTATCCC
CTGGGCGCACTCCCAATACATTCTCTTTGGATGGGCGAATATTCAAAGTT
TTCAGGGGAAGATCTACACGAAAGAACCCTCCCAGGAGGAAGGGAGGAAG
AGTGGGGGAGAATGAGGAACCTTTGGTATCCCCTGGGCGCACTCCCAATA
CATTCTCTTTGGATGGGCGAATATTCAAAGTTTTCAGGGGAAGATCTACA
CGAAAGAACCCTCCCAGGAGGAAGCGAAGCTTCGAGCTGAAGAAAGTATT
CACCAGAGTGCCAGCCAAGCTCATCTTGTCGATTGTGGTCGCCGTCGTCG
CGCTCGTGGTCTTCTACGGCGAAGCTTCGAGCTGAAGAAAGTATTCACCA
GAGTGCCAGCCAAGCTCATCTTGTCGATTGTGGTCGCCGTCGTCGCGCTC
GTGGTCTTCTACGGGCGGGGCGACGGCCCGAGGCTCGTGATACGTGATGC
CGCGCTCAGCCCAGGGGATCGATTGAAAGGCGGACAGTATATATCATTCT
GCACCAGCATCATTGCCACCGGATGCAAGCCCAAGTATCTACTGGCGGGG
CGACGGCCCGAGGCTCGTGATACGTGATGCCGCGCTCAGCCCAGGGGATC
GATTGAAAGGCGGACAGTATATATCATTCTGCACCAGCATCATTGCCACC
GGATGCAAGCCCAAGTATCTACTGCTGAATAATGACGGCTCGCTCGGCGT
GTACGGGGGCAGAGATCCACGAGTGCGTAATGCTAAGCTTTGGTCGGCAG
GCATGGGTGCTAAAGGCAACGCGCAATCATTGTACGAGCTGATTTACACT
GGCGATAAAATCGTTCTTAACAAGGATGGAAAGCTGAATAATGACGGCTC
GCTCGGCGTGTACGGGGGCAGAGATCCACGAGTGCGTAATGCTAAGCTTT
GGTCGGCAGGCATGGGTGCTAAAGGCAACGCGCAATCATTGTACGAGCTG
ATTTACACTGGCGATAAAATCGTTCTTAACAAGGATGGAAAGATGAAATG
GTCGTCTCCTGTGAAAAGCCTGCCCAAGAATTTGCAGCCCTGGCCCTTTG
GACCCTAGATGAAATGGTCGTCTCCTGTGAAAAGCCTGCCCAAGAATTTG
CAGCCCTGGCCCTTTGGACCCTAG
back to top