mRNA_H-elongata_contig54105.12781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54105.12781.1
Unique NamemRNA_H-elongata_contig54105.12781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A097ITX1_9PHAE (Alanine transaminase n=8 Tax=Sargassum TaxID=3015 RepID=A0A097ITX1_9PHAE)

HSP 1 Score: 413 bits (1061), Expect = 3.310e-141
Identity = 201/220 (91.36%), Postives = 209/220 (95.00%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVR 660
            GVRMLLTCLLRGG LHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNE  DWGV+ ENL +AL  AR + VEVRGIAVINPGNPTGNIL+EDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMG+MVNPPK GDPS++TF+K R
Sbjct:  164 GVRMLLTCLLRGGELHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNESMDWGVQMENLAEALATARGNGVEVRGIAVINPGNPTGNILAEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGMMVNPPKPGDPSYQTFEKER 383
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A097ITX3_SCYLO (Alanine transaminase n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A097ITX3_SCYLO)

HSP 1 Score: 389 bits (1000), Expect = 5.620e-132
Identity = 190/220 (86.36%), Postives = 201/220 (91.36%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVR 660
            GVR+LLTCLLR GG  DGLLTPIPQYPLYSASLTLLGGTLVPYHLNEG  WGVE +NL+  L  AR +  EVRGIAVINPGNPTGNIL+E+QIKDII+MAVD KLV+LADEVYQ+NIWKEGASFSSFKKVACDMGY GEDGD+RLQLVSFHSTSKGYFGECGLRGGYMEVHGIG EVRAELYKLASLSLCSNTVGQLA GIM+NPPK GDPSFETFQK R
Sbjct:  163 GVRILLTCLLRSGGKEDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGASWGVEMDNLRTTLAAARANGTEVRGIAVINPGNPTGNILAEEQIKDIIKMAVDEKLVVLADEVYQANIWKEGASFSSFKKVACDMGYTGEDGDDRLQLVSFHSTSKGYFGECGLRGGYMEVHGIGAEVRAELYKLASLSLCSNTVGQLATGIMINPPKPGDPSFETFQKER 382
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A097ITY2_9PHAE (Alanine transaminase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097ITY2_9PHAE)

HSP 1 Score: 384 bits (987), Expect = 4.760e-130
Identity = 185/220 (84.09%), Postives = 202/220 (91.82%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVR 660
            GVR+LLTCLLR GG HDGLLTPIPQYPLYSASL LLGGTLVPYHLNE  +WGVE  NL+++L  AR + VEVRGIAVINPGNPTGNIL+E+QIKDIIQM VD K+V+LADEVYQ+NIWK+GASFSSFKKVACDMGY GEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIG EVRAELYKL+SLSLCSNTVGQLA G+M+NPPK GDPSFETF++ R
Sbjct:  160 GVRILLTCLLRSGGKHDGLLTPIPQYPLYSASLALLGGTLVPYHLNEKANWGVEMANLRESLKTARGNGVEVRGIAVINPGNPTGNILAEEQIKDIIQMGVDEKMVVLADEVYQANIWKKGASFSSFKKVACDMGYSGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGAEVRAELYKLSSLSLCSNTVGQLAAGLMINPPKKGDPSFETFEQER 379
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A097ITY9_SACJA (Alanine transaminase n=3 Tax=Laminariales TaxID=2886 RepID=A0A097ITY9_SACJA)

HSP 1 Score: 378 bits (970), Expect = 2.020e-127
Identity = 182/220 (82.73%), Postives = 202/220 (91.82%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVR 660
            GVR+LLTCLLR GGLHDGLLTPIPQYPLYSASLTLLGGTLVPY L+EG +WGVE +NL+++L  AR   VEVRGIAVINPGNPTGNIL+E+QIKDII+MAV+ KLV++ADEVYQSNIWK+ ASFSSFKKVACDMGY G +GDERLQLVSFHSTSKGY+GECGLRGGYMEVHGIG EVRAELYKL+SLSLCSNT+GQLA GIM+NPPK GDPS+ETF K R
Sbjct:  164 GVRILLTCLLRSGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYLLSEGANWGVEMDNLRESLATARAKGVEVRGIAVINPGNPTGNILAEEQIKDIIEMAVEEKLVVIADEVYQSNIWKKDASFSSFKKVACDMGYTGAEGDERLQLVSFHSTSKGYYGECGLRGGYMEVHGIGAEVRAELYKLSSLSLCSNTIGQLATGIMINPPKKGDPSYETFTKER 383
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A097ITY8_9PHAE (Alanine transaminase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097ITY8_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 3.650e-122
Identity = 177/220 (80.45%), Postives = 201/220 (91.36%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVR 660
            GVR LLTCLLR G   DGLLTPIPQYPLYSASLTLLGGTLVPY+LNEG +WGVE +NL+++L  AR + +EVRGIAVINPGNPTGNILSEDQ+++IIQ AV+ KLVILADEVYQ+NIWK+GASFSSFKKVACDMG  G+DGD+RLQLVSFHSTSKG+ GECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLA G+M+NPP+ G+PS+ET++K R
Sbjct:  162 GVRTLLTCLLRQGR-ADGLLTPIPQYPLYSASLTLLGGTLVPYYLNEGSNWGVEMQNLRESLEFARSNGIEVRGIAVINPGNPTGNILSEDQVREIIQTAVEEKLVILADEVYQANIWKKGASFSSFKKVACDMGLTGKDGDDRLQLVSFHSTSKGFLGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLATGLMINPPREGEPSYETYRKER 380
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A835ZD97_9STRA (Alanine transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD97_9STRA)

HSP 1 Score: 309 bits (792), Expect = 8.060e-101
Identity = 149/225 (66.22%), Postives = 184/225 (81.78%), Query Frame = 1 
Query:    1 GVRMLLTCLLR--GGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDN-VEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVRFA 666
            GV++L+ C+LR    G  DG+LTPIPQYPLYSA+LTLLGG LVPYHL EG++WGV  E L+++L  ARDD+ V VRGI +INPGNPTG++L+E+QI DII++AV+  LV++ADEVYQ+N+W++   F SFKKVACD+GY  E GD RLQLVSFHSTSKGY GECG+RGGYME+HGI  +++A+LYKLASLSLCSNT GQ+ MG+MVNPPK GD S   F K R A
Sbjct:  139 GVKLLMQCMLREMADGHADGMLTPIPQYPLYSATLTLLGGRLVPYHLVEGRNWGVSIEELRESLAVARDDDGVCVRGICIINPGNPTGSVLTEEQIADIIRLAVEENLVVIADEVYQANVWQQERPFVSFKKVACDLGYTAEPGDHRLQLVSFHSTSKGYMGECGVRGGYMELHGISDDIKAQLYKLASLSLCSNTAGQVMMGLMVNPPKEGDKSHALFAKERDA 363
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BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A7S2UXD2_9STRA (Alanine transaminase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXD2_9STRA)

HSP 1 Score: 270 bits (689), Expect = 2.290e-86
Identity = 130/224 (58.04%), Postives = 165/224 (73.66%), Query Frame = 1 
Query:    1 GVRMLLTCLLRG--GGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVRFA 666
            GVR ++  L+RG   G+ DG+L PIPQYPLYSA  TLL G LVPY L+E KDWG+  E+L+  +  A    + VRG+ VINPGNPTG  LSE+ ++++     DNKLV+ ADEVYQ NIW E   F+SFKKV  DMG+  E+G+ R QL+SFHSTSKG+ GECGLRGGY E+ G  PEVRA+LYKLAS+SLCSNT+GQ+A+G+MV+PPK  D S   ++K + A
Sbjct:   56 GVRYIMQGLVRGPSSGIKDGILVPIPQYPLYSAMSTLLEGNLVPYFLDESKDWGLSVESLKAGVEEAEKKGINVRGLVVINPGNPTGQCLSEENMREVATYCADNKLVLCADEVYQENIWTEVNPFTSFKKVVKDMGFE-EEGENRFQLISFHSTSKGFIGECGLRGGYFEMFGFTPEVRAQLYKLASVSLCSNTIGQIALGLMVDPPKMSDASSAVYEKEKTA 278
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A7S1XUT1_9STRA (Alanine transaminase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUT1_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.290e-81
Identity = 126/228 (55.26%), Postives = 162/228 (71.05%), Query Frame = 1 
Query:    1 GVRMLLTCLLRGG----GLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGE--DGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVRFA 666
            GVRM+    +R      G+ DG+L P+PQYPLYSA  TL  G  VPYHLNE   W +   ++++ L +AR   + VRG+ VINPGNPTGN LS+D +KDIIQ+  D  LV++ADEVYQ+NIW     F SF+KVA +MG+  E     + LQLVSFHS SKG+ GECGLRGGY E+ GI PEVRA++ KLAS+SLCSN++GQLA G+MVNPP  G+PS+  +++ R A
Sbjct:    7 GVRMMFQICIRSPDEATGVKDGMLVPVPQYPLYSALTTLYRGEFVPYHLNEAGGWSMTAADVKEQLDDARARGINVRGLVVINPGNPTGNCLSKDAMKDIIQLCADEGLVLMADEVYQNNIWTSTLPFHSFRKVAAEMGFKEEYDASGKGLQLVSFHSCSKGFLGECGLRGGYFELFGIDPEVRAQIVKLASISLCSNSLGQLATGLMVNPPVEGEPSYPKYKEERDA 234
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: A0A7S2UX91_9STRA (Alanine transaminase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX91_9STRA)

HSP 1 Score: 259 bits (663), Expect = 5.950e-81
Identity = 120/208 (57.69%), Postives = 159/208 (76.44%), Query Frame = 1 
Query:    1 GVRMLLTCLLR--GGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPP 618
            GVR ++  LLR    G  DG+L PIPQYPLYSA  TLL G LVPY+L+E KDWG+  ++L++A+ +AR   + +R + VINPGNPTG  LSE+ ++++     + +LV+ ADEVYQ N+W EG  F+SFK+V  DMG+  E+G+ R QL+SFHSTSKG+ GECGLRGGY E+ G  PEVRA+LYKLAS+SLCSNT+GQ+A+G+MV+PP
Sbjct:  248 GVRYIMQGLLRPPSSGFKDGILVPIPQYPLYSAMSTLLEGNLVPYYLDESKDWGLSADSLRQAVDDARARGISMRALVVINPGNPTGQCLSEENMREVAAFCAERRLVLCADEVYQENVWTEGNPFTSFKRVVRDMGFEEEEGERRFQLISFHSTSKGFIGECGLRGGYFEMFGFAPEVRAQLYKLASVSLCSNTLGQVAVGLMVDPP 455
[Close]
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Match: W7TLR3_9STRA (Alanine transaminase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLR3_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.320e-78
Identity = 132/231 (57.14%), Postives = 163/231 (70.56%), Query Frame = 1 
Query:    1 GVRMLLTCLLRG--GGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGVETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDNKLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDER-------LQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMVNPPKAGDPSFETFQKVRFA 666
            GVR  L  LLR    G HDG+L PIPQYPLYSA  TLL G LVPY+L E + W +E  +L++AL  AR   V VRG+ VINPGNPTG +LS   ++ II+  V   LV++ADEVYQ+NI+ +   F SF+KVA DMGY  + G E        LQLVSFHS SKG+ GECGLRGGYME+ GI P V+A+LYKLAS+SLCSNT+GQ+  G+MV+PP+ G PSF T++  R A
Sbjct:  165 GVRYGLQSLLRPRLAGYHDGVLVPIPQYPLYSALTTLLNGELVPYYLREEEGWTLEVGDLEEALKQARARGVTVRGLVVINPGNPTGQLLSRANMEKIIEFCVQENLVLMADEVYQTNIYVDDRGFLSFRKVAVDMGYPPDAGPEEQGMNKKHLQLVSFHSVSKGFMGECGLRGGYMELFGIPPGVKAQLYKLASISLCSNTIGQVVTGLMVHPPEEGSPSFPTYEGERTA 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54105.12781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097ITX1_9PHAE3.310e-14191.36Alanine transaminase n=8 Tax=Sargassum TaxID=3015 ... [more]
A0A097ITX3_SCYLO5.620e-13286.36Alanine transaminase n=6 Tax=Ectocarpales TaxID=28... [more]
A0A097ITY2_9PHAE4.760e-13084.09Alanine transaminase n=1 Tax=Desmarestia viridis T... [more]
A0A097ITY9_SACJA2.020e-12782.73Alanine transaminase n=3 Tax=Laminariales TaxID=28... [more]
A0A097ITY8_9PHAE3.650e-12280.45Alanine transaminase n=1 Tax=Dictyopteris undulata... [more]
A0A835ZD97_9STRA8.060e-10166.22Alanine transaminase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UXD2_9STRA2.290e-8658.04Alanine transaminase n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S1XUT1_9STRA1.290e-8155.26Alanine transaminase (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S2UX91_9STRA5.950e-8157.69Alanine transaminase (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TLR3_9STRA1.320e-7857.14Alanine transaminase n=2 Tax=Monodopsidaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54105contigH-elongata_contig54105:1096..3639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.1e-102
Seed eggNOG ortholog2880.D7FVQ6
Preferred nameALAT
KEGG rclassRC00006,RC00008
KEGG koko:K00814
KEGG ReactionR00258
KEGG Pathwayko00220,ko00250,ko00710,ko01100,ko01120,ko01200,ko01210,ko01230,map00220,map00250,map00710,map01100,map01120,map01200,map01210,map01230
KEGG ModuleM00171
GOsGO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004021,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0016054,GO:0016740,GO:0016769,GO:0017076,GO:0019481,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036293,GO:0042221,GO:0042851,GO:0042853,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046686,GO:0047635,GO:0050896,GO:0070482,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.alanine aminotransferase
EggNOG OGsCOG0436@1,KOG0258@2759
EC2.6.1.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlanine transaminase
Ec32 orthologEc-03_003340.1
Exons6
Model size669
Cds size660
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.6907365-CDS-H-elongata_contig54105:1095..12361622930881.6907365-CDS-H-elongata_contig54105:1095..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1096..1236 -
1691679609.8003433-CDS-H-elongata_contig54105:1095..12361691679609.8003433-CDS-H-elongata_contig54105:1095..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1096..1236 -
1622930881.7110927-CDS-H-elongata_contig54105:1500..15631622930881.7110927-CDS-H-elongata_contig54105:1500..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1501..1563 -
1691679609.8114765-CDS-H-elongata_contig54105:1500..15631691679609.8114765-CDS-H-elongata_contig54105:1500..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1501..1563 -
1622930881.7251208-CDS-H-elongata_contig54105:1947..20251622930881.7251208-CDS-H-elongata_contig54105:1947..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1948..2025 -
1691679609.8207183-CDS-H-elongata_contig54105:1947..20251691679609.8207183-CDS-H-elongata_contig54105:1947..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 1948..2025 -
1622930881.7427297-CDS-H-elongata_contig54105:2579..26721622930881.7427297-CDS-H-elongata_contig54105:2579..2672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 2580..2672 -
1691679609.8300185-CDS-H-elongata_contig54105:2579..26721691679609.8300185-CDS-H-elongata_contig54105:2579..2672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 2580..2672 -
1622930881.7627065-CDS-H-elongata_contig54105:2991..31231622930881.7627065-CDS-H-elongata_contig54105:2991..3123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 2992..3123 -
1691679609.8391314-CDS-H-elongata_contig54105:2991..31231691679609.8391314-CDS-H-elongata_contig54105:2991..3123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 2992..3123 -
1622930881.7914603-CDS-H-elongata_contig54105:3477..36301622930881.7914603-CDS-H-elongata_contig54105:3477..3630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 3478..3630 -
1691679609.847818-CDS-H-elongata_contig54105:3477..36301691679609.847818-CDS-H-elongata_contig54105:3477..3630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54105 3478..3630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.8093672-UTR-H-elongata_contig54105:3630..36391622930881.8093672-UTR-H-elongata_contig54105:3630..3639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54105 3631..3639 -
1691679609.8560848-UTR-H-elongata_contig54105:3630..36391691679609.8560848-UTR-H-elongata_contig54105:3630..3639Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54105 3631..3639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54105.12781.1prot_H-elongata_contig54105.12781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54105 1096..3630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54105.12781.1

>prot_H-elongata_contig54105.12781.1 ID=prot_H-elongata_contig54105.12781.1|Name=mRNA_H-elongata_contig54105.12781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp
MLLTCLLRGGGLHDGLLTPIPQYPLYSASLTLLGGTLVPYHLNEGKDWGV
ETENLQKALVNARDDNVEVRGIAVINPGNPTGNILSEDQIKDIIQMAVDN
KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHST
SKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGIMV
NPPKAGDPSFETFQKVRFA*
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mRNA from alignment at H-elongata_contig54105:1096..3639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54105.12781.1 ID=mRNA_H-elongata_contig54105.12781.1|Name=mRNA_H-elongata_contig54105.12781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2544bp|location=Sequence derived from alignment at H-elongata_contig54105:1096..3639- (Himanthalia elongata Himel1 dioecious)
GGTGTGCGCATGTTGTTAACCTGCCTTTTGAGAGGAGGGGGCCTTCACGA
TGGGCTCTTGACACCTATCCCACAGTATCCCCTGTATTCGGCCTCGCTAA
CTCTACTAGGTGGTACACTCGTGCCGTACCACCTTAACGAGGGCAAAGAC
TGGGGAGTCGAGGTAAGACTTATTTATTAGCAATGACTCTGCTACGTAGA
CCTTGGAAATCGGTATCGATATCGGTACAGTAGGTGAAGTAGGTGGTAGA
CTGCCTAAAGATCGTATCGGTTCTGTAGCAAGTGCCGATCCCTGTCCTTC
ATGCCCCTCACGATGATGCTGACCTATCGAGCCACATTTCGTTATGGTAG
GTAGCCTAGGAGTGAGGTGCTAGCGTAGTGCTGGTTATCCCCAACATGTC
GATAACTCGCATCGGTAATGCTGTACTACATATAGAATGTGTTATTTCTT
ATTGATGATATAATTTAGTAATTAAATTCCCTTCGTACGGCGCACTTCGT
ACTTCGTATATAAAAGACCGAGAACCTTCAGAAAGCTTTAGTGAATGCCC
GCGACGATAATGTTGAGGTCCGCGGCATCGCTGTCATCAACCCTGGAAAC
CCCACTGGGAACATTCTGTCCGAGGATCAGATTAAGGACATTATACAGGT
GCCAATGTGAAACGTGAAACGCCCGCGAGATCTTGCTGTAAGCCATATAA
GTTCCTTGAGTACGGTACCCTAGAGTACAGTATAGCACAGTAGCGTTATT
GATGCATAGAAATCACGGGCATAATCTTCACGTAATGTTGCTACAGTTCC
AGGCACCCGCACAAGTATACTTATGTCAAGTTGTTGTGGAGTCAAAGCAG
TCTTCAAGAACGCTGAGCAAGCGTTGCCATCACCGAACCTCACCTTATGC
TTGTATGTGTATGGGGGTGGGGGGCGACGGCGTTTGTGGGGTTGTTTACG
GTGTTGGTCATTAACAGATGGCCGTGGACAACAAGCTAGTCATTCTGGCG
GACGAAGTGTACCAGTCAAACATATGGAAGGAAGGCGCTTCTTTCTCCTC
CTTTAAGAAGGTGATACCACTGAAACTGGCAACGAACACCAAGACTACAC
GATGTAATGGAACTTTTGGCAAGTGGCATATTTTCGTTTATCCTAGAAGA
GCTGGAGCTGTAGGCTCTCTGCATTATTAGGGACCGGCTTTCTGTTGCAA
CATGATCGACTATTTTGTTGTAGAGCTAGGTCCTGTTGATCTATGTCTTT
CACACCGATCTGATTCTGGGACTGTCCTATGGCACTCGCCGCGAGCGTTT
GCCAACAGCAACATACAACGGTACATCGTAGCATTAATAGTGCAGTATAT
ATAAAATGGCATATTTTTTGTGGATACAATAATTCACCCCGAGGCCAGCG
GGTCAGCTCAGGCCTAAAGCGATATTGTCCGATCGCAATTGTTAGCTCGC
TGTCCACCTATCCTTAGCGGCAGGGTGTGATGATTGTGATTGCTATAGTG
GCATAGATGGATTGGACTCTCTACAAGTGTAATCCTTACCGTTTCAATTC
GTAAGATGCATAGTTTTTTACTCGTATTAAGTACGTAAAGGGTTCCGTGA
CGCCCGCAACCCAGGTGGCTTGTGATATGGGCTACCACGGCGAGGATGGT
GACGAGCGACTGCAGCTTGTCTCTTTCCACTCCACTTCGAAGGTGTGAAG
ATAACTATTGTACTTGATATTGGGGCAAAAATTGATGAGCCCATGAGAGG
TGGGGGTTAAATATAATCAGTTGTGGTTATTAGCTATTATGTTTTTCAAG
GCACATATTGCAGTCGATATGCACAATGAGTATAGCCGTGAGAACAGGTA
AGATGAATTGATGCCAATTACAACTTGAGTGGAGGCAGCTTCTTTTTGAG
TGAACTATAGCAGCAGTGTGCTGTAGGGTTGTGGTCCCGAGCCTGGAAAT
GTCGCGGATGTTCATCTATAGAGCTAAATATGATAAAGAGCCCCATTGGT
TATCCCTACCACGTTAGCACCTTCGATGCAGCTGTTCTTCTCTGCCCTCC
CTTACGTGGCGTGTTCGAATACGCAGGGCTACTTCGGGGAGTGCGGGTTG
CGTGGGGGTTACATGGAGGTGCATGGAATAGGGCCAGAGGTGAGGCATTT
CCGTGAACCGAGTATGTGCACTGCGTAATAGGGGCCGCGCAACCTCCTGG
CATTGATCCGATGTCACAGTAGTAATGTAAGGACAGAGGTAGTTTGCAAT
ACTGTTTTCCGTGTTGGAGCTCTAGAGGTTTTATATATTATATGCAATGT
ATAGAGACTGCGTATGTTCGTCGATGGGTGTCTTATGTTACTCTTCGTCA
CTCTTATATTTATTTTTCTGTTCTGTACTGTTCTCTTTATTCGAACCTAA
CAGGTGAGAGCGGAACTGTACAAACTAGCATCGTTATCGCTGTGCTCTAA
CACCGTGGGACAGCTTGCAATGGGCATCATGGTCAACCCTCCAAAGGCCG
GCGATCCGTCTTTCGAAACCTTCCAGAAGGTGCGTTTTGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig54105:1096..3639-

>mRNA_H-elongata_contig54105.12781.1 ID=mRNA_H-elongata_contig54105.12781.1|Name=mRNA_H-elongata_contig54105.12781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig54105:1096..3639- (Himanthalia elongata Himel1 dioecious)
ATGTTGTTAACCTGCCTTTTGAGAGGAGGGGGCCTTCACGATGGGCTCTT
GACACCTATCCCACAGTATCCCCTGTATTCGGCCTCGCTAACTCTACTAG
GTGGTACACTCGTGCCGTACCACCTTAACGAGGGCAAAGACTGGGGAGTC
GAGATGTTGTTAACCTGCCTTTTGAGAGGAGGGGGCCTTCACGATGGGCT
CTTGACACCTATCCCACAGTATCCCCTGTATTCGGCCTCGCTAACTCTAC
TAGGTGGTACACTCGTGCCGTACCACCTTAACGAGGGCAAAGACTGGGGA
GTCGAGACCGAGAACCTTCAGAAAGCTTTAGTGAATGCCCGCGACGATAA
TGTTGAGGTCCGCGGCATCGCTGTCATCAACCCTGGAAACCCCACTGGGA
ACATTCTGTCCGAGGATCAGATTAAGGACATTATACAGACCGAGAACCTT
CAGAAAGCTTTAGTGAATGCCCGCGACGATAATGTTGAGGTCCGCGGCAT
CGCTGTCATCAACCCTGGAAACCCCACTGGGAACATTCTGTCCGAGGATC
AGATTAAGGACATTATACAGATGGCCGTGGACAACAAGCTAGTCATTCTG
GCGGACGAAGTGTACCAGTCAAACATATGGAAGGAAGGCGCTTCTTTCTC
CTCCTTTAAGAAGATGGCCGTGGACAACAAGCTAGTCATTCTGGCGGACG
AAGTGTACCAGTCAAACATATGGAAGGAAGGCGCTTCTTTCTCCTCCTTT
AAGAAGGTGGCTTGTGATATGGGCTACCACGGCGAGGATGGTGACGAGCG
ACTGCAGCTTGTCTCTTTCCACTCCACTTCGAAGGTGGCTTGTGATATGG
GCTACCACGGCGAGGATGGTGACGAGCGACTGCAGCTTGTCTCTTTCCAC
TCCACTTCGAAGGGCTACTTCGGGGAGTGCGGGTTGCGTGGGGGTTACAT
GGAGGTGCATGGAATAGGGCCAGAGGGCTACTTCGGGGAGTGCGGGTTGC
GTGGGGGTTACATGGAGGTGCATGGAATAGGGCCAGAGGTGAGAGCGGAA
CTGTACAAACTAGCATCGTTATCGCTGTGCTCTAACACCGTGGGACAGCT
TGCAATGGGCATCATGGTCAACCCTCCAAAGGCCGGCGATCCGTCTTTCG
AAACCTTCCAGAAGGTGCGTTTTGCGTGAGTGAGAGCGGAACTGTACAAA
CTAGCATCGTTATCGCTGTGCTCTAACACCGTGGGACAGCTTGCAATGGG
CATCATGGTCAACCCTCCAAAGGCCGGCGATCCGTCTTTCGAAACCTTCC
AGAAGGTGCGTTTTGCGTGA
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