mRNA_H-elongata_contig541.12779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig541.12779.1
Unique NamemRNA_H-elongata_contig541.12779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: D8LRN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 4.830e-24
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 SRTGLIQSKLTTDILQNALGPQVLSSIATTVTSGVGL---ANLKIPEDADEAKAALRELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            S TG   SKLT +IL+ ALG  V++++  T  +   +   + L+ P D +     LRELVG + + GRLQVVVSGPAGFVFHVEGLLA+L IPPEAVV LD
Sbjct:   15 SGTGRQHSKLTVEILERALGEPVMTAVVATKEAEARVTAKSELRPPYDLNRMTDTLRELVGIETSSGRLQVVVSGPAGFVFHVEGLLADLHIPPEAVVTLD 115
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.220e-13
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:   10 GLIQSKLTTDILQNALGPQVLSSIATTVTSGVGLANLKI--------------PEDADEAKAALRELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            GL++ K+T +ILQ A GP +L+ +                             PEDA      L +L G+   GG+LQVVVSGP GFVF+VE +LAE+ +P EA+V LD
Sbjct:   12 GLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHXXXXXXXXXXXXKRDEGSPEDA--RGITLDDLAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFLD 118
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.440e-9
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  163 ELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            EL GS DT G+LQVVVSGP+GFVF+VE +L E+ + P A+VLLD
Sbjct: 1849 ELAGSGDTPGKLQVVVSGPSGFVFYVETILTEMGVLPSAIVLLD 1892
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.840e-9
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   10 GLIQSKLTTDILQNALGPQVLSSIAT----TVTSGVGLANLKIPEDADEAKAALRELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            GL++ ++  +IL+N  G  +LSSIA        + +  ++  + ++ +       EL+G+  T G+LQVVVSGP  FV +V+ LL ++ +P  + VLLD
Sbjct:  241 GLVRGRVNREILENVFGEALLSSIAAYNRQRALNSLACSDSDVGDEKEGQGEDDGELIGTDQTAGKLQVVVSGPTAFVANVKQLLTQMGVPAGSTVLLD 339
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.640e-9
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  163 ELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            +L GS DT G+LQVVVSGP+GFVF+VE +L E+ + P A+VLLD
Sbjct: 1155 DLAGSGDTPGKLQVVVSGPSGFVFYVETILTEMGVLPSAIVLLD 1198
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.710e-9
Identity = 33/99 (33.33%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   10 GLIQSKLTTDILQNALGPQVLSSIAT----TVTSGVGLANLKIPEDADEAKAALRELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            GL++ ++  +IL+   G  ++SSIA        + +  ++  + ++ +      R+L+G+  T G+LQVVVSGP  FV +V+ LL E+ +P  + VLLD
Sbjct: 1392 GLVRGRVNREILETVFGEALISSIAAYNRQRALNSLACSDSDVGDNKEGEGEDDRDLIGTDQTAGKLQVVVSGPTAFVANVKQLLTEMGVPAGSTVLLD 1490
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BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.690e-7
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  163 ELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD 294
            EL GS  T GRLQVVVSGP GFV  VE +L E+ IP  A+VLLD
Sbjct: 1584 ELAGSDTTPGRLQVVVSGPTGFVSLVETILGEMGIPSSAIVLLD 1627
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig541.12779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN4_ECTSI4.830e-2454.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9F0_9PHAE8.220e-1339.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL8_9PHAE3.440e-965.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTF1_9PHAE3.840e-934.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI8.640e-963.64Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D7G7J2_ECTSI8.710e-933.33Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI2.690e-765.91Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig541contigH-elongata_contig541:16173..16709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7G7J2
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930881.5273192-CDS-H-elongata_contig541:16172..163731622930881.5273192-CDS-H-elongata_contig541:16172..16373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig541 16173..16373 +
1691679609.7559683-CDS-H-elongata_contig541:16172..163731691679609.7559683-CDS-H-elongata_contig541:16172..16373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig541 16173..16373 +
1622930881.5393791-CDS-H-elongata_contig541:16613..167091622930881.5393791-CDS-H-elongata_contig541:16613..16709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig541 16614..16709 +
1691679609.7682588-CDS-H-elongata_contig541:16613..167091691679609.7682588-CDS-H-elongata_contig541:16613..16709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig541 16614..16709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig541.12779.1prot_H-elongata_contig541.12779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig541 16173..16709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig541.12779.1

>prot_H-elongata_contig541.12779.1 ID=prot_H-elongata_contig541.12779.1|Name=mRNA_H-elongata_contig541.12779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
SRTGLIQSKLTTDILQNALGPQVLSSIATTVTSGVGLANLKIPEDADEAK
AALRELVGSKDTGGRLQVVVSGPAGFVFHVEGLLAELSIPPEAVVLLD*
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mRNA from alignment at H-elongata_contig541:16173..16709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig541.12779.1 ID=mRNA_H-elongata_contig541.12779.1|Name=mRNA_H-elongata_contig541.12779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig541:16173..16709+ (Himanthalia elongata Himel1 dioecious)
TCTAGAACCGGGCTTATACAGTCGAAGCTGACCACGGATATTCTGCAAAA
TGCCCTCGGGCCGCAAGTGCTAAGCTCGATTGCGACGACCGTGACTTCCG
GGGTTGGATTAGCTAACTTAAAAATCCCGGAAGATGCAGACGAAGCTAAA
GCGGCCCTCCGCGAGCTGGTTGGCTCGAAGGATACTGGTGGAAGATTGCA
AGTGAGTACTAGCGAACTCTTGTATGGTTGATTCTAACGTGAAATGATTC
TTTTTAGTACTTCTCGAGTTTCCTTGATATGCCTCTCGCCGCTGCATCAG
GGACCGATGGCCTTGTTCACAAATGTTTATACATTTTGTTCCCAGGTACA
TGTGCTGAGCATACCGCCACTTTATCTCTTTCATGGCCGCGTGCTATGGC
GCACGTCTATTGTCCCTTTCCGTTCTTCTTGCTGGATACAGGTGGTTGTG
TCAGGCCCGGCCGGCTTCGTCTTTCATGTAGAAGGTTTGCTGGCCGAGCT
CAGCATCCCGCCTGAGGCAGTGGTCCTGCTGGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig541:16173..16709+

>mRNA_H-elongata_contig541.12779.1 ID=mRNA_H-elongata_contig541.12779.1|Name=mRNA_H-elongata_contig541.12779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig541:16173..16709+ (Himanthalia elongata Himel1 dioecious)
TCTAGAACCGGGCTTATACAGTCGAAGCTGACCACGGATATTCTGCAAAA
TGCCCTCGGGCCGCAAGTGCTAAGCTCGATTGCGACGACCGTGACTTCCG
GGGTTGGATTAGCTAACTTAAAAATCCCGGAAGATGCAGACGAAGCTAAA
GCGGCCCTCCGCGAGCTGGTTGGCTCGAAGGATACTGGTGGAAGATTGCA
ATCTAGAACCGGGCTTATACAGTCGAAGCTGACCACGGATATTCTGCAAA
ATGCCCTCGGGCCGCAAGTGCTAAGCTCGATTGCGACGACCGTGACTTCC
GGGGTTGGATTAGCTAACTTAAAAATCCCGGAAGATGCAGACGAAGCTAA
AGCGGCCCTCCGCGAGCTGGTTGGCTCGAAGGATACTGGTGGAAGATTGC
AAGTGGTTGTGTCAGGCCCGGCCGGCTTCGTCTTTCATGTAGAAGGTTTG
CTGGCCGAGCTCAGCATCCCGCCTGAGGCAGTGGTCCTGCTGGACTGAGT
GGTTGTGTCAGGCCCGGCCGGCTTCGTCTTTCATGTAGAAGGTTTGCTGG
CCGAGCTCAGCATCCCGCCTGAGGCAGTGGTCCTGCTGGACTGA
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