mRNA_H-elongata_contig54056.12776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54056.12776.1
Unique NamemRNA_H-elongata_contig54056.12776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54056.12776.1 vs. uniprot
Match: D7FTY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY2_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 8.130e-104
Identity = 188/399 (47.12%), Postives = 265/399 (66.42%), Query Frame = 2 
Query:   92 FMSLGRGTTLPIGQGGRLQLQIPKATATMKFTTQWIDSCHIAIHQQRVASAGLDGDNLEVSGGRGLHDDYLESIGLALEVDEALGQANLVHDEERGE-QGPYLIEVIIPEIFSLDILLASGSVSVAKKMKGTCRIRLEEGNIEVGIVRGEDIVLSTNRGLVHVDELEGKVDITATTNVSARLINGSKVQIAAAG-DDTVVKVGGLYSSGAQISSTGDVTVSASHGLLSVNTKGSQXXXXXXXXXXXXXXXTDQGDARIHVDTLEDGTNNYVRQVLSDTGDVSLSVSQEVRANLEIKGDIGELPLSFEGHAEAHQAVGTIDRENIKTSEEA-YGSAYSTTSINDGRGKIDLAGARNQSLRQYFKTSPAKRTP-PTLSVSSVGGTIRMETLSWADNVVRKF 1276
            F S G   T+PIGQGGRL + + KA A +K TTQWIDSC + + +     AG DG +L  +G + +  + L++ GL+L  DEA  Q  L HD+E    +  YLIE ++PE+FS+++L + G+VSV+KK+KG C++RL+ G+I VGIVRGE I LST RG + VDELEG VDITAT+NV ARLING+KV+I   G DD  V VG LYSSGA I+S G+V VS+ HG ++V+T  +                  +G A +H+D LE+GT +++R   S+ GD+++S+SQ+V A++EI GD+ ++P +F+G  +  +AVG+I    ++ S    +GS   T+S + G GKID+ GAR QSLRQYF  + A  +  P LSV + GG + +ETLSWADN+ RKF
Sbjct:   36 FTSSGHAQTIPIGQGGRLVIDMAKAAAVIKVTTQWIDSCSVEVSR---LPAGSDGRSLAGAGAKEVLSN-LDAAGLSLHADEAHAQVTLAHDKEHPSVEDTYLIEAVVPELFSVELLASHGNVSVSKKIKGDCKVRLDRGDINVGIVRGETIRLSTGRGHIKVDELEGNVDITATSNVRARLINGAKVKINTTGHDDPSVNVGALYSSGAHITSAGNVGVSSCHGRIAVHTADTSGSVNLSSVSGTAHVSAGEGGATVHLDVLEEGTASHIR---SNGGDINVSLSQQVDADVEITGDVVKVPSTFKGDTQRGRAVGSIYSAQVEPSRATRHGS---TSSTDAGGGKIDMVGARGQSLRQYFPGNTATTSVRPKLSVVAEGGCVVVETLSWADNITRKF 424
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54056.12776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTY2_ECTSI8.130e-10447.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54056contigH-elongata_contig54056:362..3265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.0
Seed ortholog evalue4e-88
Seed eggNOG ortholog2880.D7FTY2
EggNOG OGs2CACM@1,2R08A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionDomain of unknown function DUF4098
Ec32 orthologEc-07_002820.1
Exons4
Model size1466
Cds size1275
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54056.12776.1prot_H-elongata_contig54056.12776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54056 531..3243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.7502372-UTR-H-elongata_contig54056:361..5301622930880.7502372-UTR-H-elongata_contig54056:361..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54056 362..530 -
1691679609.3486917-UTR-H-elongata_contig54056:361..5301691679609.3486917-UTR-H-elongata_contig54056:361..530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54056 362..530 -
1622930880.8557084-UTR-H-elongata_contig54056:3243..32651622930880.8557084-UTR-H-elongata_contig54056:3243..3265Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54056 3244..3265 -
1691679609.405274-UTR-H-elongata_contig54056:3243..32651691679609.405274-UTR-H-elongata_contig54056:3243..3265Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54056 3244..3265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.763561-CDS-H-elongata_contig54056:530..9181622930880.763561-CDS-H-elongata_contig54056:530..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 531..918 -
1691679609.3592684-CDS-H-elongata_contig54056:530..9181691679609.3592684-CDS-H-elongata_contig54056:530..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 531..918 -
1622930880.7780678-CDS-H-elongata_contig54056:1451..15211622930880.7780678-CDS-H-elongata_contig54056:1451..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 1452..1521 -
1691679609.3684072-CDS-H-elongata_contig54056:1451..15211691679609.3684072-CDS-H-elongata_contig54056:1451..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 1452..1521 -
1622930880.790465-CDS-H-elongata_contig54056:2120..23401622930880.790465-CDS-H-elongata_contig54056:2120..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 2121..2340 -
1691679609.3850012-CDS-H-elongata_contig54056:2120..23401691679609.3850012-CDS-H-elongata_contig54056:2120..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 2121..2340 -
1622930880.8074124-CDS-H-elongata_contig54056:2646..32431622930880.8074124-CDS-H-elongata_contig54056:2646..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 2647..3243 -
1691679609.393488-CDS-H-elongata_contig54056:2646..32431691679609.393488-CDS-H-elongata_contig54056:2646..3243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54056 2647..3243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54056.12776.1

>prot_H-elongata_contig54056.12776.1 ID=prot_H-elongata_contig54056.12776.1|Name=mRNA_H-elongata_contig54056.12776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=425bp
MIVSAIMPQLPRACFRQSLGIWRFMSLGRGTTLPIGQGGRLQLQIPKATA
TMKFTTQWIDSCHIAIHQQRVASAGLDGDNLEVSGGRGLHDDYLESIGLA
LEVDEALGQANLVHDEERGEQGPYLIEVIIPEIFSLDILLASGSVSVAKK
MKGTCRIRLEEGNIEVGIVRGEDIVLSTNRGLVHVDELEGKVDITATTNV
SARLINGSKVQIAAAGDDTVVKVGGLYSSGAQISSTGDVTVSASHGLLSV
NTKGSQGDVTLSSVNGAVQVSTDQGDARIHVDTLEDGTNNYVRQVLSDTG
DVSLSVSQEVRANLEIKGDIGELPLSFEGHAEAHQAVGTIDRENIKTSEE
AYGSAYSTTSINDGRGKIDLAGARNQSLRQYFKTSPAKRTPPTLSVSSVG
GTIRMETLSWADNVVRKFTQDVDK*
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mRNA from alignment at H-elongata_contig54056:362..3265-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54056.12776.1 ID=mRNA_H-elongata_contig54056.12776.1|Name=mRNA_H-elongata_contig54056.12776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2904bp|location=Sequence derived from alignment at H-elongata_contig54056:362..3265- (Himanthalia elongata Himel1 dioecious)
CAAAACTGAACTCGTGCCACGGATGATTGTCTCAGCCATCATGCCGCAAC
TACCTAGAGCATGCTTCAGGCAGAGTTTGGGCATCTGGCGATTCATGTCC
CTAGGTAGAGGAACAACTTTACCGATTGGTCAAGGAGGACGTCTTCAACT
GCAAATACCCAAAGCAACAGCGACGATGAAGTTTACCACCCAGTGGATTG
ACTCGTGTCATATTGCTATTCACCAACAGCGCGTGGCGTCAGCTGGCCTT
GATGGCGATAATCTGGAGGTTTCGGGGGGCCGAGGACTTCATGATGACTA
CCTCGAGTCAATCGGTCTGGCACTCGAGGTAGATGAGGCACTTGGACAAG
CGAATCTTGTCCACGATGAGGAAAGAGGTGAACAAGGACCCTACCTTATC
GAGGTCATCATCCCCGAGATTTTCTCGTTGGACATTTTGTTGGCCAGCGG
CAGCGTTTCCGTGGCGAAAAAGATGAAGGGAACCTGCCGAATACGTTTGG
AGGAGGGAAATATCGAGGTGGGTATAGTCCGAGGGGAGGATATCGTTCTA
TCGACGAACCGTGGACTGGTCCATGTCGACGAGCTCGAGGGCAAGGTGGA
TATTACTGCTACCACGAACGTGAGTTGGGACCAGTTCCTCGTGACGAGAT
CCTCAGGTGGGATGATGATAGCAAGACTAAAGGGTTCCAAAATACCCTCT
CCTGCCTTCGGATTTCTTAGATCTACAAGTATGCCACTAAACTTTAGTGA
TAACTCATGTTGAAAATATCATAACGTCCGTTAACCGTCATAGACGACAC
ACCATGTTTATTTCGTGACCTTTTGATACCTTATTTGTACTAACAGACTG
GATGTAGCACAGCTTCCCTCCCTCGTGTTAGAGTTTGCATACAGCAGGTA
GTGACAATCTGTTGCGACTATGCAGGTTAGCGCAAGGCTCATCAATGGCT
CCAAGGTGCAGATAGCTGCCGCGGGCGATGACACAGTAGTCAAAGTCGGA
GGACTATATTCATCCGGAGCTCAAATATCTTCCACAGGCGATGTGACTGT
TTCCGCAAGCCATGGCCTGCTTTCGGTGAATACCAAGGGATCTCAAGGTG
ACGTGACGCTATCAAGCGTCAACGGAGCTGTTCAAGTATCCACAGGTAAA
CTAACTACGTACTCGGATCTAGACAAGCGGAGAAGGAGAGTTTAATGTCG
CTTTCTCACTTTGATCCGATTAGACCTATATGCATATCCTCTTTCCTTTT
TATTACGTAGAATTAAACCGCATAAACCGGCATGATGACACGTAAGAGAG
GCCGCATCGGTTTGCACGTAACCCTCCACCTTTGAGGAGCTGCTCCTTAA
GGCATTGGTTTGGCACATCCTACTTACGTTGCCTACACAACCGCGACGAA
CTACCCCTGCAGCTCTCTCTCCTGTCCCCGCTGTTTCATCTCTGAGCGCA
ACACTTCGAGGGGTTGGCGTTGCGGTTTCGAATGCAGCCGCACTCCAACC
TCGTTTTTGATCTGGCGTGCCGCTTGCCTGGCTCCTGTCCTCAATGACAC
AGTCGTCTGGTGCTGAAGAGTGCGCTCAATTTGTATTGTTCGCATCCTGA
TAATGCTTGCTCGGCCTCGTTTACATTATAATTTCCTTTTCACATATGTA
GATGATATATGATGTCTGATGATGCTTGGTGCGGCTGAATGTGATTAACA
AAACCACGCCACAATCAACCGTTTTCTTCATGTAATGGTTTCAGATCAAG
GCGACGCCCGAATCCATGTGGACACCCTTGAAGACGGAACGAATAACTAT
GTCAGGCAAGTTTTGTACTTGCACGGTCTCCCACGTACGACATACATAGC
CGCAATGTTAAATAAGCTTTTCATGACTTCAACCCCACATGCTGCTGTTT
TTTGAGCATTTCACTCTACATTTGCCAGTAGAGCTTCAAGGTTCATTGTA
GATCTCCGTGCGTGGTTGGATGTAAAATAGACTTAAAACTTATTCCGCAG
TAACTTCCAATGTCGTGCCATGTTATATCACGCTCGCACCGTCGATGTTA
TATTACATTATATAGCATTATTTGACATTATATAGCATTATATTACGTTC
TAAAATTACCTGCCCTACTCGGTTTTCCATCCGTGAAGCAACACACTATA
AAAATAAATGGTATTATAATTGAACTTGGATTTAAATGTTTCTCATGATT
TTTTTTTATTTATAAAAGACTTTGGGCTCATTCCAACTCTCCGAACGTCC
ACGCCTTCTTGGCACCATAAGAGGTGCAGAAACTTGAGCTCATATTTCGT
TGTAGCTATTTGGCCACTCATGTGTTTGGGGTGAATCGCGATGGCAGGTC
GGACACGGGTGACGTTTCTTTATCAGTATCCCAGGAAGTGCGAGCCAACT
TGGAGATCAAGGGTGACATTGGCGAGCTCCCTTTGAGCTTTGAAGGACAT
GCAGAAGCACACCAAGCGGTGGGTACGATCGATCGAGAAAATATAAAAAC
ATCGGAAGAAGCTTACGGTAGTGCCTACAGTACTACATCAATCAACGACG
GGAGAGGGAAAATCGATCTCGCTGGAGCAAGGAACCAATCTCTTCGGCAG
TACTTCAAAACATCCCCTGCCAAAAGAACTCCCCCTACGCTATCGGTCTC
ATCTGTTGGAGGAACAATTCGAATGGAAACCCTTAGCTGGGCTGATAATG
TTGTCAGGAAGTTCACACAGGATGTTGACAAATAGAGAAATGAATATAAT
TAGAGCCAGTCAAACTCTGCCCATGGTGATTGTAATTTTACCGTACCCCG
CACATAAGACACGCGTCCCATCAGCCTCGACGTACACTTCTGCCACCTAC
ATTTTGGTTAAGGGCGCTAATCCTCTGATAACTATCTAGTAAGTATTTTT
ATTT
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Coding sequence (CDS) from alignment at H-elongata_contig54056:362..3265-

>mRNA_H-elongata_contig54056.12776.1 ID=mRNA_H-elongata_contig54056.12776.1|Name=mRNA_H-elongata_contig54056.12776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2550bp|location=Sequence derived from alignment at H-elongata_contig54056:362..3265- (Himanthalia elongata Himel1 dioecious)
ATGATTGTCTCAGCCATCATGCCGCAACTACCTAGAGCATGCTTCAGGCA
GAGTTTGGGCATCTGGCGATTCATGTCCCTAGGTAGAGGAACAACTTTAC
CGATTGGTCAAGGAGGACGTCTTCAACTGCAAATACCCAAAGCAACAGCG
ACGATGAAGTTTACCACCCAGTGGATTGACTCGTGTCATATTGCTATTCA
CCAACAGCGCGTGGCGTCAGCTGGCCTTGATGGCGATAATCTGGAGGTTT
CGGGGGGCCGAGGACTTCATGATGACTACCTCGAGTCAATCGGTCTGGCA
CTCGAGGTAGATGAGGCACTTGGACAAGCGAATCTTGTCCACGATGAGGA
AAGAGGTGAACAAGGACCCTACCTTATCGAGGTCATCATCCCCGAGATTT
TCTCGTTGGACATTTTGTTGGCCAGCGGCAGCGTTTCCGTGGCGAAAAAG
ATGAAGGGAACCTGCCGAATACGTTTGGAGGAGGGAAATATCGAGGTGGG
TATAGTCCGAGGGGAGGATATCGTTCTATCGACGAACCGTGGACTGGTCC
ATGTCGACGAGCTCGAGGGCAAGGTGGATATTACTGCTACCACGAACATG
ATTGTCTCAGCCATCATGCCGCAACTACCTAGAGCATGCTTCAGGCAGAG
TTTGGGCATCTGGCGATTCATGTCCCTAGGTAGAGGAACAACTTTACCGA
TTGGTCAAGGAGGACGTCTTCAACTGCAAATACCCAAAGCAACAGCGACG
ATGAAGTTTACCACCCAGTGGATTGACTCGTGTCATATTGCTATTCACCA
ACAGCGCGTGGCGTCAGCTGGCCTTGATGGCGATAATCTGGAGGTTTCGG
GGGGCCGAGGACTTCATGATGACTACCTCGAGTCAATCGGTCTGGCACTC
GAGGTAGATGAGGCACTTGGACAAGCGAATCTTGTCCACGATGAGGAAAG
AGGTGAACAAGGACCCTACCTTATCGAGGTCATCATCCCCGAGATTTTCT
CGTTGGACATTTTGTTGGCCAGCGGCAGCGTTTCCGTGGCGAAAAAGATG
AAGGGAACCTGCCGAATACGTTTGGAGGAGGGAAATATCGAGGTGGGTAT
AGTCCGAGGGGAGGATATCGTTCTATCGACGAACCGTGGACTGGTCCATG
TCGACGAGCTCGAGGGCAAGGTGGATATTACTGCTACCACGAACGTTAGC
GCAAGGCTCATCAATGGCTCCAAGGTGCAGATAGCTGCCGCGGGCGATGA
CACAGTAGTCAAAGTCGGAGGACTATATTCATCCGGAGCTCAAATATCTT
CCACAGGCGATGTGACTGTTTCCGCAAGCCATGGCCTGCTTTCGGTGAAT
ACCAAGGGATCTCAAGGTGACGTGACGCTATCAAGCGTCAACGGAGCTGT
TCAAGTATCCACAGGTTAGCGCAAGGCTCATCAATGGCTCCAAGGTGCAG
ATAGCTGCCGCGGGCGATGACACAGTAGTCAAAGTCGGAGGACTATATTC
ATCCGGAGCTCAAATATCTTCCACAGGCGATGTGACTGTTTCCGCAAGCC
ATGGCCTGCTTTCGGTGAATACCAAGGGATCTCAAGGTGACGTGACGCTA
TCAAGCGTCAACGGAGCTGTTCAAGTATCCACAGATCAAGGCGACGCCCG
AATCCATGTGGACACCCTTGAAGACGGAACGAATAACTATGTCAGGCAAG
TTTTATCAAGGCGACGCCCGAATCCATGTGGACACCCTTGAAGACGGAAC
GAATAACTATGTCAGGCAAGTTTTGTCGGACACGGGTGACGTTTCTTTAT
CAGTATCCCAGGAAGTGCGAGCCAACTTGGAGATCAAGGGTGACATTGGC
GAGCTCCCTTTGAGCTTTGAAGGACATGCAGAAGCACACCAAGCGGTGGG
TACGATCGATCGAGAAAATATAAAAACATCGGAAGAAGCTTACGGTAGTG
CCTACAGTACTACATCAATCAACGACGGGAGAGGGAAAATCGATCTCGCT
GGAGCAAGGAACCAATCTCTTCGGCAGTACTTCAAAACATCCCCTGCCAA
AAGAACTCCCCCTACGCTATCGGTCTCATCTGTTGGAGGAACAATTCGAA
TGGAAACCCTTAGCTGGGCTGATAATGTTGTCAGGAAGTTCACACAGGAT
GTTGACAAATAGGTCGGACACGGGTGACGTTTCTTTATCAGTATCCCAGG
AAGTGCGAGCCAACTTGGAGATCAAGGGTGACATTGGCGAGCTCCCTTTG
AGCTTTGAAGGACATGCAGAAGCACACCAAGCGGTGGGTACGATCGATCG
AGAAAATATAAAAACATCGGAAGAAGCTTACGGTAGTGCCTACAGTACTA
CATCAATCAACGACGGGAGAGGGAAAATCGATCTCGCTGGAGCAAGGAAC
CAATCTCTTCGGCAGTACTTCAAAACATCCCCTGCCAAAAGAACTCCCCC
TACGCTATCGGTCTCATCTGTTGGAGGAACAATTCGAATGGAAACCCTTA
GCTGGGCTGATAATGTTGTCAGGAAGTTCACACAGGATGTTGACAAATAG
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