mRNA_H-elongata_contig5405.12774.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5405.12774.1
Unique NamemRNA_H-elongata_contig5405.12774.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5405.12774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5405contigH-elongata_contig5405:6320..7228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size432
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5405.12774.1prot_H-elongata_contig5405.12774.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5405 6320..7227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.5498269-CDS-H-elongata_contig5405:6319..64631622930880.5498269-CDS-H-elongata_contig5405:6319..6463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6320..6463 +
1691679609.265805-CDS-H-elongata_contig5405:6319..64631691679609.265805-CDS-H-elongata_contig5405:6319..6463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6320..6463 +
1622930880.5684192-CDS-H-elongata_contig5405:6632..66561622930880.5684192-CDS-H-elongata_contig5405:6632..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6633..6656 +
1691679609.2758687-CDS-H-elongata_contig5405:6632..66561691679609.2758687-CDS-H-elongata_contig5405:6632..6656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6633..6656 +
1622930880.585263-CDS-H-elongata_contig5405:6702..68271622930880.585263-CDS-H-elongata_contig5405:6702..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6703..6827 +
1691679609.2861776-CDS-H-elongata_contig5405:6702..68271691679609.2861776-CDS-H-elongata_contig5405:6702..6827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 6703..6827 +
1622930880.602173-CDS-H-elongata_contig5405:7091..72271622930880.602173-CDS-H-elongata_contig5405:7091..7227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 7092..7227 +
1691679609.2945116-CDS-H-elongata_contig5405:7091..72271691679609.2945116-CDS-H-elongata_contig5405:7091..7227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5405 7092..7227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5405.12774.1

>prot_H-elongata_contig5405.12774.1 ID=prot_H-elongata_contig5405.12774.1|Name=mRNA_H-elongata_contig5405.12774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
TVNNNSTLGVASGELLGRRCLGGITGHYEKPNRCYHRRGGQALLWYGWVR
RTETLGDSTGGGYEDIFIVFVAAMCGTIAMSTRLWAGKDENDNEDFIKSH
HKPNMELSEKENIEISYGIEISYGGVDDIEEVKHDAGNKNGRS
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mRNA from alignment at H-elongata_contig5405:6320..7228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5405.12774.1 ID=mRNA_H-elongata_contig5405.12774.1|Name=mRNA_H-elongata_contig5405.12774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig5405:6320..7228+ (Himanthalia elongata Himel1 dioecious)
ACTGTTAACAATAATTCGACCCTTGGTGTTGCTAGCGGGGAGCTTCTTGG
CCGTCGGTGTCTTGGAGGTATCACAGGCCATTATGAAAAGCCCAATAGAT
GCTATCATAGACGTGGCGGTCAGGCGCTCCTCTGGTACGGATGGGTAAGT
CTCTGATCGCACGACATTGAGACTGTTGGACAGTCAGTTAGCAATATCAC
GGTGTTATTTGTTTTCTTCAACTCCCCCCTTTTCCACTACGCGCTATTTC
GAACGAATTGATTGATAGTTCGCCAAACCAGCCAAACACATCACATGTTT
TCCTTGTTGCAAGGTTCGGAGAACAGAGACTCTGGGGCGCCATTGGTGTT
GGGGCAATGTCGCTTGCCGGAGGCCTTCTCTACGACTCTACCGGCGGTGG
ATATGAAGACATTTTCATCGTGTTTGTTGCAGCGATGTGTGGAACAATAG
CGATGTCAACAAGGCTTTGGGCGGGAAAGGATGAAAACGATAACGAGGAT
TTCATCAAGTAAGAGAATATCGGATGCGGCCAAATGCATCGAGCAGATGC
TGATGTCCGTAGACTCCAGTGTGCTTGCTTGTATTATTCGGAAACGAAAC
CATTCTGGGAAAATGTCCATCGTGTAAAACAGCATCGTGGACGGCGTGGG
ATCGAAAATCACGATCGATCGTGATATCTGAGAAGCCTAGGGGAGCGACC
AGTTCGTTATCTAAAGTTTGCACGTGAAGACTAGAGCTACGCTTGTAACG
TATTTTGTATCATATGTGGCAGATCCCATCACAAGCCAAACATGGAGCTA
TCTGAAAAGGAGAATATTGAGATATCTTATGGGATTGAGATATCTTATGG
GGGCGTCGATGATATCGAAGAAGTCAAACACGATGCTGGCAATAAGAACG
GAAGAAGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5405:6320..7228+

>mRNA_H-elongata_contig5405.12774.1 ID=mRNA_H-elongata_contig5405.12774.1|Name=mRNA_H-elongata_contig5405.12774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig5405:6320..7228+ (Himanthalia elongata Himel1 dioecious)
ACTGTTAACAATAATTCGACCCTTGGTGTTGCTAGCGGGGAGCTTCTTGG
CCGTCGGTGTCTTGGAGGTATCACAGGCCATTATGAAAAGCCCAATAGAT
GCTATCATAGACGTGGCGGTCAGGCGCTCCTCTGGTACGGATGGACTGTT
AACAATAATTCGACCCTTGGTGTTGCTAGCGGGGAGCTTCTTGGCCGTCG
GTGTCTTGGAGGTATCACAGGCCATTATGAAAAGCCCAATAGATGCTATC
ATAGACGTGGCGGTCAGGCGCTCCTCTGGTACGGATGGGTTCGGAGAACA
GAGACTCTGGGGGTTCGGAGAACAGAGACTCTGGGGGACTCTACCGGCGG
TGGATATGAAGACATTTTCATCGTGTTTGTTGCAGCGATGTGTGGAACAA
TAGCGATGTCAACAAGGCTTTGGGCGGGAAAGGATGAAAACGATAACGAG
GATTTCATCAAGACTCTACCGGCGGTGGATATGAAGACATTTTCATCGTG
TTTGTTGCAGCGATGTGTGGAACAATAGCGATGTCAACAAGGCTTTGGGC
GGGAAAGGATGAAAACGATAACGAGGATTTCATCAAATCCCATCACAAGC
CAAACATGGAGCTATCTGAAAAGGAGAATATTGAGATATCTTATGGGATT
GAGATATCTTATGGGGGCGTCGATGATATCGAAGAAGTCAAACACGATGC
TGGCAATAAGAACGGAAGAAGCATCCCATCACAAGCCAAACATGGAGCTA
TCTGAAAAGGAGAATATTGAGATATCTTATGGGATTGAGATATCTTATGG
GGGCGTCGATGATATCGAAGAAGTCAAACACGATGCTGGCAATAAGAACG
GAAGAAGC
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