mRNA_H-elongata_contig54022.12769.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: D7FKD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD1_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.520e-58 Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL--AEDSGKDCYWQDSECY----EGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
VES+GKYS+QKAFR+ +E KTFPLHTAII+V++GEVTGISWDDGCHFC SS C+DNTY Y+G+L E +G+DCYW DS+C E VS+LCQLTVYVVWTGTDSKGN+FTS +KRLSMY
Sbjct: 119 VESMGKYSFQKAFRLREEEKTFPLHTAIISVDEGEVTGISWDDGCHFCGSSQCEDNTYDYTGQLIGGEGNGQDCYWPDSDCLQDGVEDQVSALCQLTVYVVWTGTDSKGNFFTSFAKRLSMY 240
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S2USG7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USG7_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.370e-34 Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADEGK--TFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL-AEDSGKDCYWQDSECY--EGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
VE+ Y++QK +R + G TFPL A+I V+KGEVTG+ WDDGC FC S++C NTY Y G L D KDC+ +D++C +G+VS C+L +YV W+GTD G S+ KRLS Y
Sbjct: 6 VENQQHYTFQKLYRTSQRGNGVTFPLLQAVILVDKGEVTGVIWDDGCFFCGSANCVHNTYAYDGSLRTTDVDKDCFIEDNDCMNSDGTVSEFCELAIYVAWSGTDKYGRNLRSAEKRLSQY 126
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A835ZB01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB01_9STRA) HSP 1 Score: 124 bits (312), Expect = 5.780e-33 Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSG-----KDCYWQDSE-CYE--GSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
VES G S+QK+FR A G TFPL TAII V++G +T I+WDDGCHFC+ CQ NT+ ++G G KDCY++D++ C G VS CQL VYVVW+GTD G +F S KRL ++
Sbjct: 114 VESNGVASFQKSFRQASLGITFPLFTAIINVDRGNITSITWDDGCHFCARQFCQANTFNFAGTNTTADGQALGGKDCYYEDAKSCVNASGQVSDACQLEVYVVWSGTDRDGIFFQSQQKRLGLF 237
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S2R547_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R547_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.660e-30 Identity = 59/119 (49.58%), Postives = 75/119 (63.03%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIA-DEGK--TFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSGKDCYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
VES ++SYQK FR D G TFPL A++ V++G+V GI+WD GC C S C N Y Y G L +D+ +C+ +D++C SS C LTVYVVWTGTD GNY S KRLS +
Sbjct: 102 VESESEFSYQKLFRTTMDNGDQATFPLAVAVVDVDEGKVKGITWDTGCFDCEESSCTKNQYRYDGSLFKDTHDECHKKDTQCS----SSKCDLTVYVVWTGTDKNGNYLLSQQKRLSNF 216
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: W7TT05_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT05_9STRA) HSP 1 Score: 109 bits (272), Expect = 4.540e-27 Identity = 56/121 (46.28%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADE-GKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSD-CQDNTYMYSGELAEDSG--KDCYWQDSECYEGSVS--SLCQLTVYVVWTGTDSKGNYFTSSSKRLSM 345
VES+G S+QK +R D G+TF + TAII +++G VTGI++D+GC C +SD C +NTY ++GE G DC+ D+EC + + + CQL++Y+ WTGTD++GN+ TSSS+R S+
Sbjct: 107 VESMGVASFQKLYRQEDSLGRTFSVLTAIINLDRGVVTGITFDNGCPLCDNSDRCVENTYDFTGERYTGVGATSDCFLTDAECALNAQADRNACQLSLYITWTGTDAQGNFLTSSSRRFSL 227
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S4AKM8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKM8_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.550e-26 Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 22 SYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELA--EDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
S+QK + D+ K FP TAII V KGEVTGI+WDD C FC S +C+DNT+ Y GE+A E++ + CY C + S + C L +YVVWTGTDSKG SS+ R S +
Sbjct: 20 SFQKLYYNGDD-KVFPFLTAIINVHKGEVTGITWDDACVFCGSDECEDNTFRYDGEIATKEEARQPVGGCYNTVERC-QSSKKAECDLILYVVWTGTDSKGRDMMSSANRFSAF 131
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S3UNI9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UNI9_HETAK) HSP 1 Score: 105 bits (263), Expect = 9.930e-26 Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 19 YSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGEL---AEDSGKDCYWQDSECYEGS---VSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
+SYQK +R + TFPL + +++G V G++WDDGC +CS S C +NTY Y G L A+ GKDCY D+ C + + V CQL VY+ W GTD G S+ +RLS +
Sbjct: 114 FSYQKLYR--KDSNTFPLFQIVFVLDEGVVEGVTWDDGCLYCSGSSCTENTYEYDGSLYTSADLPGKDCYLADASCVDSATDEVLDFCQLEVYLAWAGTDQDGRNLRSAERRLSAF 227
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A7S4AKE4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKE4_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.480e-25 Identity = 58/121 (47.93%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELA--EDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
ES S+QK + D+ K FP TAII V KGEVTGI+WDD C FC S +C+DNT+ Y GE+A E++ + CY C + S + C L +YVVWTGTDSKG SS+ R S +
Sbjct: 142 AESQTALSFQKLYYNGDD-KVFPFLTAIINVHKGEVTGITWDDACVFCGSDECEDNTFRYDGEIATKEEARQPVGGCYNTVERC-QSSKKAECDLILYVVWTGTDSKGRDMMSSANRFSAF 260
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A8K1CV35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV35_PYTOL) HSP 1 Score: 103 bits (258), Expect = 3.990e-25 Identity = 46/104 (44.23%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 46 ADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAED---SGKDCYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
++ G +P TAI++V+KGEVTG++WDDGC+FC S C+ N+Y Y ++ G C+ Q S C G+ ++ C LT+YV WTGTDS G+Y +S+ R+S +
Sbjct: 109 SERGHIYPYMTAIVSVKKGEVTGVTWDDGCYFCDHSMCEPNSYRYPTNVSSQLTGEGYTCFNQMSSC-SGTNATACDLTIYVGWTGTDSNGDYLSSAGMRMSQF 211
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Match: A0A2D4C851_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C851_PYTIN) HSP 1 Score: 103 bits (257), Expect = 5.390e-25 Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 1 VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSSDCQDNTYMYSGELAEDSGKD---CYWQDSECYEGSVSSLCQLTVYVVWTGTDSKGNYFTSSSKRLSMY 348
+ S+ S K + +D G +P TAII+V+KG+V G+SWDDGC+FC S C+ N Y ++ ++ K+ CY + C G ++ C LT+Y+ WTGTDSKGNY +S+ R+S +
Sbjct: 93 ISSMAMRSAYKLYA-SDAGHIYPFLTAIISVKKGQVQGVSWDDGCYFCGSEMCEPNLYRFASNVSSRVAKEGYTCYNNVATC-SGPNATSCDLTIYIGWTGTDSKGNYLSSAGLRMSQF 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54022.12769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54022.12769.1 >prot_H-elongata_contig54022.12769.1 ID=prot_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp VESLGKYSYQKAFRIADEGKTFPLHTAIIAVEKGEVTGISWDDGCHFCSSback to top mRNA from alignment at H-elongata_contig54022:313..2115- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54022.12769.1 ID=mRNA_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1803bp|location=Sequence derived from alignment at H-elongata_contig54022:313..2115- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54022:313..2115- >mRNA_H-elongata_contig54022.12769.1 ID=mRNA_H-elongata_contig54022.12769.1|Name=mRNA_H-elongata_contig54022.12769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig54022:313..2115- (Himanthalia elongata Himel1 dioecious)back to top |