mRNA_H-elongata_contig54011.12766.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A6H5LJB3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJB3_9PHAE) HSP 1 Score: 281 bits (720), Expect = 2.800e-92 Identity = 135/170 (79.41%), Postives = 148/170 (87.06%), Query Frame = 1
Query: 1 SFGGKVHADFPPLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQADGAATKVS 510
S GG VH D PPLVYHERYS +PWP HSFPMSKF DLA+LLAD GPLG GPVAM GAFRPMDRPPH+WFEAVHDP YYRAF+GG LD K +RRIGLP+++ LVDRTLLEVSGTVL A LAL++GLACNLAGGTHHAH+ FGSGYTILNDLAVASRVVQADG A+KV+
Sbjct: 40 SLGGIVHKDLPPLVYHERYSADPWPPKHSFPMSKFRDLAELLADTNGPLGDEGPVAMKGAFRPMDRPPHKWFEAVHDPLYYRAFVGGTLDGKVIRRIGLPYTEPLVDRTLLEVSGTVLAARLALKFGLACNLAGGTHHAHKGFGSGYTILNDLAVASRVVQADGTASKVT 209
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A8J6CHI7_DIALT (Hist_deacetyl domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHI7_DIALT) HSP 1 Score: 168 bits (426), Expect = 1.320e-48 Identity = 92/158 (58.23%), Postives = 103/158 (65.19%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQADGAATKV 507
PLVYH +YS EPWP H F MSKF DL L LG G P+D PP EWF AVHD +YY F G L AMRRIG +S LV+RT LE +GTVL A LAL +GLACNL GGTHHAHR FGSG+TILNDLAV++R VQ G A +V
Sbjct: 9 PLVYHAKYSFEPWPAAHRFRMSKFVDLHDHL------LGR-GIATKEQLHAPIDDPPDEWFTAVHDADYYFGFTDGTLPAPAMRRIGFEWSAQLVERTRLECAGTVLAARLALEHGLACNLGGGTHHAHRDFGSGFTILNDLAVSARYVQNTGLAARV 159
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A7S4BJF9_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJF9_CHRCT) HSP 1 Score: 163 bits (412), Expect = 3.390e-47 Identity = 89/154 (57.79%), Postives = 107/154 (69.48%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSK---ALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQA 486
PLVYH RYS PWP TH FPM KF+DL + +G +A A ++ + P H WFEAVHDP YYR+F+ G L E+ RRIG AL+DRT LE +GTVLTA LAL +GLACNLAGGTHHAHR+FGSG+TILNDLAVA+ ++A
Sbjct: 12 PLVYHARYSA-PWPRTHRFPMWKFSDLHAFIK-------RTG-LASAASWHEPELPDHAWFEAVHDPVYYRSFIEGRLGEEQERRIGFRNEMRKPALIDRTRLECAGTVLTAQLALEHGLACNLAGGTHHAHRSFGSGFTILNDLAVAAARIRA 156
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A7S4BJF7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJF7_CHRCT) HSP 1 Score: 163 bits (412), Expect = 1.890e-46 Identity = 89/154 (57.79%), Postives = 107/154 (69.48%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSK---ALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQA 486
PLVYH RYS PWP TH FPM KF+DL + +G +A A ++ + P H WFEAVHDP YYR+F+ G L E+ RRIG AL+DRT LE +GTVLTA LAL +GLACNLAGGTHHAHR+FGSG+TILNDLAVA+ ++A
Sbjct: 12 PLVYHARYSA-PWPRTHRFPMWKFSDLHAFIK-------RTG-LASAASWHEPELPDHAWFEAVHDPVYYRSFIEGRLGEEQERRIGFRNEMRKPALIDRTRLECAGTVLTAQLALEHGLACNLAGGTHHAHRSFGSGFTILNDLAVAAARIRA 156
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A7S2IEI5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IEI5_9EUKA) HSP 1 Score: 156 bits (394), Expect = 4.410e-45 Identity = 88/149 (59.06%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPF---SKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVAS 471
PLVYH YS PWP H FPM KFA L L S G A RP++ PPH WFEAVHD EYYRAFL G L + RRIG L+ RTLLE SGTV T LAL +GLA NLAGGTHHAHR FGSG+TILNDLAVA+
Sbjct: 1 PLVYHPPYSC-PWPPAHRFPMWKFAGLYAHLT-------SIGIATPANIHRPLNDPPHAWFEAVHDREYYRAFLAGQLGSEQERRIGFKEHAREAPLIQRTLLECSGTVRTVQLALEHGLAANLAGGTHHAHRGFGSGFTILNDLAVAA 141
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A6V1V0D3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0D3_HETAK) HSP 1 Score: 159 bits (403), Expect = 1.620e-44 Identity = 84/160 (52.50%), Postives = 101/160 (63.12%), Query Frame = 1
Query: 7 GGKVHADFPPLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGA-FRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQ 483
G K + PP VYH YS PWP H FPM KF L ++L + + G F P+D PPHEWF VHD YY+ FL L RRIG LV RT LEV+GT+LTA LAL++GLACNLAGGTHHAH+ +GSGYTILNDLA+ ++V+Q
Sbjct: 54 GVKWNKSSPPFVYHPEYSC-PWPSNHRFPMWKFKGLFEVLCKDH--------IIREGEYFVPLDDPPHEWFTLVHDERYYKGFLDNTLTNDEWRRIGFRPGPGLVRRTRLEVAGTLLTAQLALQHGLACNLAGGTHHAHKGYGSGYTILNDLAITAKVLQ 204
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: UPI001746C654 (histone deacetylase n=1 Tax=Phormidium tenue TaxID=126344 RepID=UPI001746C654) HSP 1 Score: 157 bits (397), Expect = 2.520e-44 Identity = 88/159 (55.35%), Postives = 106/159 (66.67%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAK-LLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQADGAATKV 507
PLVYH Y P P H FPM+KF L + L+AD VA+A F DRPP +W E VH PEY +A+ G LD KA RRIGLP+S ALV+RT + V GT+LTA LAL+ GLACN AGGTHHA ++GSG+ I NDLA+A+RVVQ G A K+
Sbjct: 4 PLVYHPDYVV-PLPPEHRFPMAKFRMLYEALIADG---------VALASQFHTPDRPPKDWLELVHTPEYVQAYCEGTLDPKAQRRIGLPWSPALVNRTCVAVGGTILTAKLALQAGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVVQRLGLAQKI 152
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A8J7JXQ9_9CYAN (Histone deacetylase n=1 Tax=Oculatella sp. LEGE 06141 TaxID=1828648 RepID=A0A8J7JXQ9_9CYAN) HSP 1 Score: 154 bits (389), Expect = 4.070e-43 Identity = 85/159 (53.46%), Postives = 102/159 (64.15%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADL-AKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQADGAATKV 507
PLVYH Y P P TH FPM+KF L LLAD VA F +RPP +W E VH P+Y + G LD KA RRIGLP+S ALV+RTL V GT+LTA LAL +GLACN AGGTHHA ++GSG+ I NDLA+A+RV+Q G A ++
Sbjct: 4 PLVYHPNY-VAPLPPTHRFPMAKFGQLYTTLLADG---------VAQPTQFHSPERPPQDWLELVHTPDYVGQYCEGTLDAKAQRRIGLPWSAALVNRTLTAVGGTILTAQLALEHGLACNTAGGTHHAFPSYGSGFCIFNDLAIAARVMQHLGLAQRI 152
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A2T1FDA4_9CYAN (Histone deacetylase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T1FDA4_9CYAN) HSP 1 Score: 154 bits (388), Expect = 5.740e-43 Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQ 483
P++YHE Y P P H FPM+KF L ++L + VA F + PP EW E VHD Y +A+ G LD KA+RRIGLP+S+AL +RT + V+GTVLTA LAL YGLACN AGGTHHA FGSG+ I NDLA+ASRV+Q
Sbjct: 4 PIIYHEDY-VAPLPPGHRFPMAKFGMLYQMLIADG--------VADRSQFHAPELPPQEWIELVHDRHYVQAYCNGTLDAKAIRRIGLPWSRALANRTFIAVAGTVLTAKLALEYGLACNTAGGTHHAFPGFGSGFCIFNDLAIASRVLQ 144
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Match: A0A1C0VLD4_9CYAN (Histone deacetylase n=3 Tax=Limnothrix TaxID=132605 RepID=A0A1C0VLD4_9CYAN) HSP 1 Score: 154 bits (388), Expect = 5.740e-43 Identity = 86/158 (54.43%), Postives = 101/158 (63.92%), Query Frame = 1
Query: 34 PLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGSSGPVAMAGAFRPMDRPPHEWFEAVHDPEYYRAFLGGLLDEKAMRRIGLPFSKALVDRTLLEVSGTVLTAHLALRYGLACNLAGGTHHAHRAFGSGYTILNDLAVASRVVQADGAATKV 507
PLVYH Y P P H FPM KFA L L + G++ P F DRPP +W E VHD Y A+ G LD KA RRIGLP+S AL +RT + GTVLTA LALR+GLACNLAGGTHHA FGSG+ I NDLA+A+RV+QA+G +V
Sbjct: 4 PLVYHPDY-VAPLPPGHRFPMQKFARLYDRLRSD----GTATPEQ----FHQPDRPPQDWIELVHDRAYVEAYCQGTLDPKAQRRIGLPWSPALANRTCVAAGGTVLTARLALRHGLACNLAGGTHHAFPDFGSGFCIFNDLAIATRVLQAEGLVDRV 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54011.12766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54011.12766.1 >prot_H-elongata_contig54011.12766.1 ID=prot_H-elongata_contig54011.12766.1|Name=mRNA_H-elongata_contig54011.12766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp SFGGKVHADFPPLVYHERYSTEPWPETHSFPMSKFADLAKLLADEEGPLGback to top mRNA from alignment at H-elongata_contig54011:2011..3684+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54011.12766.1 ID=mRNA_H-elongata_contig54011.12766.1|Name=mRNA_H-elongata_contig54011.12766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1674bp|location=Sequence derived from alignment at H-elongata_contig54011:2011..3684+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54011:2011..3684+ >mRNA_H-elongata_contig54011.12766.1 ID=mRNA_H-elongata_contig54011.12766.1|Name=mRNA_H-elongata_contig54011.12766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig54011:2011..3684+ (Himanthalia elongata Himel1 dioecious)back to top |