mRNA_H-elongata_contig53998.12764.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53998.12764.1
Unique NamemRNA_H-elongata_contig53998.12764.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.290e-24
Identity = 62/149 (41.61%), Postives = 78/149 (52.35%), Query Frame = 1
Query:   10 PPRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISS----------------------------------VSMLGMLRAHGGRVLQARWRPTAP-----------PAFVTSSTDCAVLLWTI 321
            P    RL+ T+HS G  FL    TGRAL+S+  H DQTR+LDFS +G SLLT S+DGL+G+                                    V ++ MLRAHGGRVLQA+W+P              PAF+TSSTDC V+LWT+
Sbjct:  963 PGDPERLVATAHSGGCIFLXXXXTGRALTSILHHTDQTRSLDFSQDGSSLLTGSFDGLIGVCDCRPRGTHSTASLRLGNPPALGGASGGEAEDPEMDVRVMSMLRAHGGRVLQAKWKPRTAVSGGGLGYGGRPAFLTSSTDCTVMLWTL 1111          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A7S3PSD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSD3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.540e-19
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   13 PRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSM-----LGMLRAHGGRVLQARWRPTAPPAFVTSSTD 297
            P  N  + T H DG C +WD+R G A+  ++ H D  R++DFSP+G  LLTAS+DG VGI    +     +   R H  +VLQA+W P  P  FVT S D
Sbjct:   19 PNTNHTVATGHLDGSCTIWDIRKGSAMYCLNQHDDDVRSIDFSPDGRWLLTASFDGTVGIIDTEVFTQDFVASFRGHATKVLQAQWHPKQP-YFVTCSAD 117          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A7RYT9_NEMVE (Predicted protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYT9_NEMVE)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-10
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   28 LLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGIS--------SVSMLGMLRAHGGRVLQARWRPTAPPAFVTSSTDCAVLLWTI 321
            LL++ H DG C L+D+  GR L     H    R++ FSP+GH LL+ SYD    +         ++    ++  H  +++Q RW P    AFV+SS D    LWT+
Sbjct:  270 LLVSGHEDGGCMLYDITAGRTLQFFKPHTADCRSVRFSPDGHHLLSCSYDTSTILMEMQHDLECNIPPYSVVAQHDDKMIQCRWHPFLM-AFVSSSADRTARLWTL 374          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0XGC5_TRIPS (WD repeat-containing protein 47 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0XGC5_TRIPS)

HSP 1 Score: 64.3 bits (155), Expect = 7.740e-10
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  175 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 281          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0ZTC7_9BILA (WD repeat-containing protein 47 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZTC7_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  331 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 437          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0SCX4_9BILA (WD repeat-containing protein 47 (Fragment) n=2 Tax=Trichinella nelsoni TaxID=6336 RepID=A0A0V0SCX4_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.250e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  317 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 423          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1JWI8_TRIPS (WD repeat-containing protein 47 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1JWI8_TRIPS)

HSP 1 Score: 64.3 bits (155), Expect = 1.260e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  833 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 939          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1ATG8_TRISP (ATP-binding cassette sub-family B member 6, mitochondrial n=5 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1ATG8_TRISP)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  307 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 413          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V1NQG7_9BILA (WD repeat-containing protein 47 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V1NQG7_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.290e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  946 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 1052          
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Match: A0A0V0TE82_9BILA (ATP-binding cassette sub-family B member 6, mitochondrial n=16 Tax=Trichinella TaxID=6333 RepID=A0A0V0TE82_9BILA)

HSP 1 Score: 64.3 bits (155), Expect = 1.300e-9
Identity = 40/110 (36.36%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   25 RLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNGHSLLTASYDGLVGISSVSMLGMLRA---------HGGRVLQARWRPTAPPAFVTSSTDCAVLLWTIPP 327
            RLL++ H D    L+D+   R +     H+D+ RA+ FSP  + LL+ SYD  V I+   M G L A         H  +V+Q RW P     FV++S D + +LW +PP
Sbjct:  947 RLLVSGHEDASVMLYDIHGARLVQLYRPHVDEVRAVRFSPGTYYLLSGSYDKKVAITD--MRGDLMAPLKYLPVVEHQDKVIQCRWHPHDF-TFVSTSADRSAVLWALPP 1053          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53998.12764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LHR8_ECTSI6.290e-2441.61CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3PSD3_9STRA2.540e-1944.00Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A7RYT9_NEMVE1.200e-1034.91Predicted protein n=3 Tax=Nematostella vectensis T... [more]
A0A0V0XGC5_TRIPS7.740e-1036.36WD repeat-containing protein 47 n=1 Tax=Trichinell... [more]
A0A0V0ZTC7_9BILA1.160e-936.36WD repeat-containing protein 47 n=5 Tax=Trichinell... [more]
A0A0V0SCX4_9BILA1.250e-936.36WD repeat-containing protein 47 (Fragment) n=2 Tax... [more]
A0A0V1JWI8_TRIPS1.260e-936.36WD repeat-containing protein 47 n=13 Tax=Trichinel... [more]
A0A0V1ATG8_TRISP1.290e-936.36ATP-binding cassette sub-family B member 6, mitoch... [more]
A0A0V1NQG7_9BILA1.290e-936.36WD repeat-containing protein 47 n=5 Tax=Trichinell... [more]
A0A0V0TE82_9BILA1.300e-936.36ATP-binding cassette sub-family B member 6, mitoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53998contigH-elongata_contig53998:3315..3773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue3.3e-21
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-18_000180.1
Exons2
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930879.3843281-CDS-H-elongata_contig53998:3314..34661622930879.3843281-CDS-H-elongata_contig53998:3314..3466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53998 3315..3466 -
1691679608.8295472-CDS-H-elongata_contig53998:3314..34661691679608.8295472-CDS-H-elongata_contig53998:3314..3466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53998 3315..3466 -
1622930879.4047663-CDS-H-elongata_contig53998:3580..37731622930879.4047663-CDS-H-elongata_contig53998:3580..3773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53998 3581..3773 -
1691679608.8418384-CDS-H-elongata_contig53998:3580..37731691679608.8418384-CDS-H-elongata_contig53998:3580..3773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53998 3581..3773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53998.12764.1prot_H-elongata_contig53998.12764.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53998 3315..3773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53998.12764.1

>prot_H-elongata_contig53998.12764.1 ID=prot_H-elongata_contig53998.12764.1|Name=mRNA_H-elongata_contig53998.12764.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
SLSPPRQNRLLMTSHSDGQCFLWDMRTGRALSSVSSHMDQTRALDFSPNG
HSLLTASYDGLVGISSVSMLGMLRAHGGRVLQARWRPTAPPAFVTSSTDC
AVLLWTIPPAGSRL*
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mRNA from alignment at H-elongata_contig53998:3315..3773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53998.12764.1 ID=mRNA_H-elongata_contig53998.12764.1|Name=mRNA_H-elongata_contig53998.12764.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig53998:3315..3773- (Himanthalia elongata Himel1 dioecious)
TCGCTGTCGCCACCACGTCAAAACAGGCTGCTCATGACATCACACTCGGA CGGCCAATGCTTCCTCTGGGACATGCGAACCGGGCGCGCACTTTCGTCCG TTTCCAGCCACATGGACCAGACGCGCGCCCTCGATTTCTCTCCCAACGGC CACTCGCTCCTTACCGCCTCCTACGACGGCCTGGTCGGCATCTGTGAGTG CAAGAAAGAACAGGGCATGAAACCGATCACATCGTCCATGTCGGCGGCGG CAGCCGGTTATGCTGGAACAAACGGCGATGACGGCGGATGTGCCGGATCT CGGCAAGCTTCTGTTTCGATGCTCGGGATGCTGCGGGCGCACGGGGGGCG CGTTCTGCAGGCTCGGTGGAGGCCCACGGCACCGCCGGCCTTCGTCACGA GCAGCACAGACTGCGCGGTCTTGTTGTGGACGATACCGCCTGCAGGAAGC AGGCTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53998:3315..3773-

>mRNA_H-elongata_contig53998.12764.1 ID=mRNA_H-elongata_contig53998.12764.1|Name=mRNA_H-elongata_contig53998.12764.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig53998:3315..3773- (Himanthalia elongata Himel1 dioecious)
TCGCTGTCGCCACCACGTCAAAACAGGCTGCTCATGACATCACACTCGGA
CGGCCAATGCTTCCTCTGGGACATGCGAACCGGGCGCGCACTTTCGTCCG
TTTCCAGCCACATGGACCAGACGCGCGCCCTCGATTTCTCTCCCAACGGC
CACTCGCTCCTTACCGCCTCCTACGACGGCCTGGTCGGCATCTTCGCTGT
CGCCACCACGTCAAAACAGGCTGCTCATGACATCACACTCGGACGGCCAA
TGCTTCCTCTGGGACATGCGAACCGGGCGCGCACTTTCGTCCGTTTCCAG
CCACATGGACCAGACGCGCGCCCTCGATTTCTCTCCCAACGGCCACTCGC
TCCTTACCGCCTCCTACGACGGCCTGGTCGGCATCTCTTCTGTTTCGATG
CTCGGGATGCTGCGGGCGCACGGGGGGCGCGTTCTGCAGGCTCGGTGGAG
GCCCACGGCACCGCCGGCCTTCGTCACGAGCAGCACAGACTGCGCGGTCT
TGTTGTGGACGATACCGCCTGCAGGAAGCAGGCTTTAGCTTCTGTTTCGA
TGCTCGGGATGCTGCGGGCGCACGGGGGGCGCGTTCTGCAGGCTCGGTGG
AGGCCCACGGCACCGCCGGCCTTCGTCACGAGCAGCACAGACTGCGCGGT
CTTGTTGTGGACGATACCGCCTGCAGGAAGCAGGCTTTAG
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