mRNA_H-elongata_contig53896.12755.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.080e-26 Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 10 FVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRA-APDYYMLSYL--------EVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
FVYLG I G + EI R A CF + S+A+YD P+ KVR L+AEV+E +LYGCVTW L P ++ KLR +H LLRCI R P Y + + E V +R L +AG V RM D+RLP I + GE+ G R
Sbjct: 128 FVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRCIGWKKRERKDRPLSYAKALITAGCDESVEATVRKRRLCFAGFVARMRDERLPKIALLGELQGGAR 279
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.950e-22 Identity = 56/152 (36.84%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 10 FVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRG 432
F YLG ++ GD+ EI R+ AW C +Y R ++D P K+R L+AE +E +LYGC+TW G + LR H R+LLR I R Y LSY +E + Q+ L +AG + R D RLP +M GE+ G
Sbjct: 357 FRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGY---KRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRLPKRLMFGELAGG 505
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5L0G6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G6_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.390e-19 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 4 DTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN----AYTSTRAAP 303
D FVYLG TIS+ G EI R+ AW C+ + S ++YD K+RFL+AEV+E +LYGC +W L+ + KL +HR+ L RCI+ A T + AP
Sbjct: 96 DRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQLKIRFLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIDRLEQAETIAQTAP 199
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 3.000e-18 Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = 1
Query: 4 DTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY------------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG 447
D FVYLG TIS+ EI R+ AW C+ + S ++YD K+R L+AEV+E +L GC +W L+ + KL ++R+ L R I S R D LSY +E V +R L +AG V+RM D+RLPN ++ M G RG
Sbjct: 24 DRFVYLGRTISADRKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLCGCASWSLTAEHYTKLNGTYRQFLTRRIG--WSKRKRSD-RPLSYAQALIQAGCEEIIEATVHKRRLCFAGFVMRMEDNRLPNRMLLEAMAGGVGYRG 180
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF) HSP 1 Score: 85.5 bits (210), Expect = 1.540e-16 Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = 1
Query: 1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN----AYTSTRAAPDYYMLSYLEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRK 441
VDTFVYLG+TIS G + EI RT + F K + V+ I + K+ +L +LY W +L+ H++ L R +N + TS A +E +M+ L +AG VVRM D+R+P + GE++ GKR+
Sbjct: 333 VDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNIKWRSLTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQ 483
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58) HSP 1 Score: 82.8 bits (203), Expect = 1.230e-15 Identity = 50/151 (33.11%), Postives = 73/151 (48.34%), Query Frame = 1
Query: 1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
VDTFVYLG+TIS G + EI RT F K + V+ I + K+ +L +LY W +L H++ L R +N + PD +L +E +M+ L +AG VVRM D+R+P + GE++ GKR
Sbjct: 155 VDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKR 304
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395) HSP 1 Score: 82.8 bits (203), Expect = 1.290e-15 Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1
Query: 1 VDTFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKR 438
VDTFVYLG+TIS G + EI RT A F K + V+ I + K+ +L +LY W +L H++ L R +N + PD +L +E +M+ L +AG VVRM D+R+P + GE++ GKR
Sbjct: 208 VDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAECPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKR 357
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6H5L1F1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F1_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 4.680e-15 Identity = 52/156 (33.33%), Postives = 71/156 (45.51%), Query Frame = 1
Query: 10 FVYLGNTISSVGDV------GPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCIN--------AYTSTRAAPDYYMLSYLEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGK 435
F YLG+ + ++ G E + W C KY+R +D K+R LKAE +E +L GC+TW +D L + R+LLR I S A Y +E V QR L +AG V R D RLP +M G++V GK
Sbjct: 385 FRYLGSRVREDVELTKEINHGAEQRGLVSGTWACLRKYARECFDRPTALWGLKIRLLKAEAMEALLIGCMTWAPRRKHYDLLTTTRHRLLLRVIGYRRARGQYRQLSNAQALKYVECQSVEATVRQRRLLFAGAVARQSDGRLPKRLMLGDIVGGK 540
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 78.2 bits (191), Expect = 2.300e-14 Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 1
Query: 7 TFVYLGNTISSVGDVGPEIKRRTG*AWNCFLKYSRAVYDHSYIPVADKVRFLKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRGKRKRG 447
TF YLG+TIS + EI+RR A + F + V+ I + K+ KA V+ +LYG TW L KL E+ ++ LR I P +L +E + +R L +AG +VRM D+RLP I++ GE+ +G R G
Sbjct: 111 TFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTPHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVG 261
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 75.5 bits (184), Expect = 4.180e-14 Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1
Query: 160 LKAEVLEVMLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSY-----------LEVAVMQRILHYAGRVVRMHDDRLPNIVMRGEMVRG 432
LKAEV+E +LYGCVTW L+ F KLR +H +LLR I R D+ LSY +E + +R L +AG VVR H+ RLP+ +M G + G
Sbjct: 2 LKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRT--DHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGG 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53896.12755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53896.12755.1 >prot_H-elongata_contig53896.12755.1 ID=prot_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MLYGCVTWILSPGDFDKLRESHRRMLLRCINAYTSTRAAPDYYMLSYLEVback to top mRNA from alignment at H-elongata_contig53896:2065..2547+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53896.12755.1 ID=mRNA_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig53896:2065..2547+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53896:2065..2547+ >mRNA_H-elongata_contig53896.12755.1 ID=mRNA_H-elongata_contig53896.12755.1|Name=mRNA_H-elongata_contig53896.12755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig53896:2065..2547+ (Himanthalia elongata Himel1 dioecious)back to top |