mRNA_H-elongata_contig53893.12753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53893.12753.1
Unique NamemRNA_H-elongata_contig53893.12753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.280e-13
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = -3 
Query:  176 RRLLAIPASQAQSEPVFSSAG*IVTQTRNRLSSENIKLLVELKNLWSVVEEWQRS 340
            RR+LAIP+SQAQSE VFS+AG  VT TR+RL  EN++LLV L+N+W VV+EW++S
Sbjct:  502 RRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556
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BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.090e-11
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  164 RRLLAIPASQAQSEPVFSSAG*IVTQTRNRLSSENIKLLVELKNLWSVVEEWQRSNATP 340
            RR+LAIPA+QA+SE +FS AG IVT+ RN L+   ++LLV L++ W +VEEW++SN TP
Sbjct:  162 RRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSN-TP 219
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BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.570e-11
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = -3 
Query:  164 RRLLAIPASQAQSEPVFSSAG*IVTQTRNRLSSENIKLLVELKNLWSVVEEWQRSNATP 340
            RR+LAIPA+QA+SE +FS AG IVT+ RN L+   ++LLV L++ W +VEEW++SN TP
Sbjct:  242 RRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSN-TP 299
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BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.450e-7
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = -3 
Query:  185 RLLAIPASQAQSEPVFSSAG*IVTQTRNRLSSENIKLLVELKNLWSVVEEW 337
            R+L IPASQ QSE VFSSAG +VT+TR R+  EN++L++ L+N+   V+ W
Sbjct:  428 RVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRW 478
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BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.820e-6
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -3 
Query:  209 RRLLAIPASQAQSEPVFSSAG*IVTQTRNRLSSENIKLLVELKN 340
            RR+L IPA QAQSE VFSSAG +VT+TR R+  EN+ L+V L+N
Sbjct:  499 RRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53893.12753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCS5_ECTSI6.280e-1365.45Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.090e-1157.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWI1_9PHAE3.570e-1157.63Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJV8_9PHAE4.450e-754.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE7.820e-663.64Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53893contigH-elongata_contig53893:1507..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size513
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53893.12753.1prot_H-elongata_contig53893.12753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53893 1605..2040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.2846346-UTR-H-elongata_contig53893:1506..16041622930878.2846346-UTR-H-elongata_contig53893:1506..1604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 1507..1604 +
1691679608.44463-UTR-H-elongata_contig53893:1506..16041691679608.44463-UTR-H-elongata_contig53893:1506..1604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 1507..1604 +
1622930878.351779-UTR-H-elongata_contig53893:2040..21761622930878.351779-UTR-H-elongata_contig53893:2040..2176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 2041..2176 +
1691679608.4728618-UTR-H-elongata_contig53893:2040..21761691679608.4728618-UTR-H-elongata_contig53893:2040..2176Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53893 2041..2176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.3091388-CDS-H-elongata_contig53893:1604..18431622930878.3091388-CDS-H-elongata_contig53893:1604..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 1605..1843 +
1691679608.4537406-CDS-H-elongata_contig53893:1604..18431691679608.4537406-CDS-H-elongata_contig53893:1604..1843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 1605..1843 +
1622930878.3290536-CDS-H-elongata_contig53893:2000..20401622930878.3290536-CDS-H-elongata_contig53893:2000..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 2001..2040 +
1691679608.4630275-CDS-H-elongata_contig53893:2000..20401691679608.4630275-CDS-H-elongata_contig53893:2000..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53893 2001..2040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53893.12753.1

>prot_H-elongata_contig53893.12753.1 ID=prot_H-elongata_contig53893.12753.1|Name=mRNA_H-elongata_contig53893.12753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MKLTQQHTNSPRSLQQSIAHYTGVALDRCHSSTTLQRFFNSTRSLMFSDD
RRLRVWVTIYPALENTGSDCACDAGIAKRRRQQRRGGVPGRC*
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mRNA from alignment at H-elongata_contig53893:1507..2176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53893.12753.1 ID=mRNA_H-elongata_contig53893.12753.1|Name=mRNA_H-elongata_contig53893.12753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig53893:1507..2176+ (Himanthalia elongata Himel1 dioecious)
CGTTTACACACGGTTACACACGGTCCTGCACTTGTAGCAACACCAGCCCC
TCGGAGTAGATGCCAACAAGCAGAAAAGAGCCACACTCTCTGTAACAAAT
GAAGCTAACACAACAACACACAAACTCTCCCCGTAGTTTGCAGCAATCAA
TCGCGCATTACACAGGGGTCGCGTTAGACCGCTGCCATTCCTCTACCACA
CTCCAAAGATTCTTCAACTCGACCAGGAGCTTGATGTTTTCCGATGACAG
GCGGTTGCGCGTTTGGGTGACAATCTACCCAGCGCTCGAGAACACAGGCT
CGGACTGCGCCTGCGATGCCGGGATCGCCAAAAGGCGGCGGGCAAGCACC
GCTAGCAGTGGGAGTTTGCCGGCGTGAAACCGCCACCACTCCAGCGGGTC
GGGGTGCCATCCGCCTGCTGCTGTTCCATCGACAACTAATCTAACGCCCG
ATACGCTGTGACCTCCTTCTCTGCGTCCTTTAGGAAGTGCTCAGTCGGCA
GCAACGGCGCGGTGGTGTCCCTGGAAGATGTTGACTGCTGAAGGAAAGCC
GCCAGGAAGCTGCTGCAATGGCGTTTGCTAGGGGCAGGGGCAGAATCCCC
ACGCCCTGGTGCGCCTGTCGCTGATCCAGCTGCTGCCGCTGACGATGCCG
TTGCCCGCCGCGTGCATGTG
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Coding sequence (CDS) from alignment at H-elongata_contig53893:1507..2176+

>mRNA_H-elongata_contig53893.12753.1 ID=mRNA_H-elongata_contig53893.12753.1|Name=mRNA_H-elongata_contig53893.12753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig53893:1507..2176+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTAACACAACAACACACAAACTCTCCCCGTAGTTTGCAGCAATC
AATCGCGCATTACACAGGGGTCGCGTTAGACCGCTGCCATTCCTCTACCA
CACTCCAAAGATTCTTCAACTCGACCAGGAGCTTGATGTTTTCCGATGAC
AGGCGGTTGCGCGTTTGGGTGACAATCTACCCAGCGCTCGAGAACACAGG
CTCGGACTGCGCCTGCGATGCCGGGATCGCCAAAAGGCGATGAAGCTAAC
ACAACAACACACAAACTCTCCCCGTAGTTTGCAGCAATCAATCGCGCATT
ACACAGGGGTCGCGTTAGACCGCTGCCATTCCTCTACCACACTCCAAAGA
TTCTTCAACTCGACCAGGAGCTTGATGTTTTCCGATGACAGGCGGTTGCG
CGTTTGGGTGACAATCTACCCAGCGCTCGAGAACACAGGCTCGGACTGCG
CCTGCGATGCCGGGATCGCCAAAAGGCGTCGGCAGCAACGGCGCGGTGGT
GTCCCTGGAAGATGTTGATCGGCAGCAACGGCGCGGTGGTGTCCCTGGAA
GATGTTGA
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