mRNA_H-elongata_contig53882.12752.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53882.12752.1
Unique NamemRNA_H-elongata_contig53882.12752.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 8.470e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            +GHGGSV+D +GDEED KDETMIPVDY  +GQIKDD I +E
Sbjct:  247 SGHGGSVKDNTGDEEDNKDETMIPVDYMKSGQIKDDEILKE 287
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A7S1R4M6_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1R4M6_NEODS)

HSP 1 Score: 59.3 bits (142), Expect = 7.150e-10
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIF 117
            +GHGG + D +GDEED  DET++PVDY TAGQI+DDTIF
Sbjct:   23 SGHGGQLPDDNGDEEDGYDETLVPVDYATAGQIRDDTIF 61
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A6H5JY89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY89_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 7.450e-10
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 GHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            GHGGSV+D SGDE D  DET++PVDYK++GQI DD I +E
Sbjct:   96 GHGGSVKDTSGDEADNMDETLVPVDYKSSGQITDDEILKE 135
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: D7G0P1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.480e-9
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            +GHGGSV+D SGDE D  DET++PVDYK++GQI DD I +E
Sbjct:  238 SGHGGSVKDTSGDEADNMDETLVPVDYKSSGQITDDEILKE 278
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A7S0EWY7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EWY7_9CRYP)

HSP 1 Score: 60.1 bits (144), Expect = 2.060e-9
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            +GHGGS++D +GDE D  DETM+PVDY +AGQI+DD IF+E
Sbjct:  273 SGHGGSMKDDNGDEADGMDETMVPVDYASAGQIRDDLIFQE 313
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A7R9ZAD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZAD5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.260e-9
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 GHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            GHGG + D +GDEED  DET++P+DY TAGQI+DDT++E+
Sbjct:   70 GHGGKLVDDNGDEEDGYDETLVPLDYATAGQIRDDTLYEK 109
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A7S2GUN6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUN6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.290e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFE 120
            +GHGG +RDL+GDE D  DET+IPVDY +AGQI+DD IF+
Sbjct:  199 SGHGGRLRDLNGDEADGYDETLIPVDYLSAGQIRDDAIFD 238
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A6T1ZE55_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T1ZE55_9EUGL)

HSP 1 Score: 58.5 bits (140), Expect = 6.970e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIF 117
            +GHGGSVRD  G+E+D KDET+IPVDY+  GQI+DDTI 
Sbjct:  207 SGHGGSVRDDDGNEKDGKDETIIPVDYRECGQIRDDTIM 245
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: A0A7S4L4R2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L4R2_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 7.150e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIF 117
            +GHGG V DL+GDEED  D T+IP+DYKTAGQI DD ++
Sbjct:  221 SGHGGQVEDLNGDEEDGYDSTLIPIDYKTAGQIIDDDLY 259
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BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Match: L1I610_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I610_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 7.250e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEE 123
            +GHGGS++D +GDE D  DETM+PVDY + GQI+DD IF+E
Sbjct:  273 SGHGGSMKDDNGDEADGMDETMVPVDYTSTGQIRDDIIFQE 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53882.12752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ59_ECTSI8.470e-1173.17Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S1R4M6_NEODS7.150e-1069.23Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A6H5JY89_9PHAE7.450e-1067.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G0P1_ECTSI1.480e-965.85Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S0EWY7_9CRYP2.060e-965.85Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7R9ZAD5_9STRA2.260e-962.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2GUN6_9STRA3.290e-967.50Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6T1ZE55_9EUGL6.970e-969.23Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4L4R2_9EUKA7.150e-966.67Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
L1I610_GUITC7.250e-963.41Uncharacterized protein n=2 Tax=Guillardia theta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53882contigH-elongata_contig53882:136..262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D8LJ59
Preferred nameMCA5
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size127
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.2129588-CDS-H-elongata_contig53882:135..2611622930878.2129588-CDS-H-elongata_contig53882:135..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53882 136..261 +
1691679608.4326644-CDS-H-elongata_contig53882:135..2611691679608.4326644-CDS-H-elongata_contig53882:135..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53882 136..261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53882.12752.1prot_H-elongata_contig53882.12752.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53882 136..261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53882.12752.1

>prot_H-elongata_contig53882.12752.1 ID=prot_H-elongata_contig53882.12752.1|Name=mRNA_H-elongata_contig53882.12752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
TGHGGSVRDLSGDEEDEKDETMIPVDYKTAGQIKDDTIFEEA
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mRNA from alignment at H-elongata_contig53882:136..262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53882.12752.1 ID=mRNA_H-elongata_contig53882.12752.1|Name=mRNA_H-elongata_contig53882.12752.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=127bp|location=Sequence derived from alignment at H-elongata_contig53882:136..262+ (Himanthalia elongata Himel1 dioecious)
ACAGGGCACGGCGGATCGGTCCGTGACCTTTCCGGCGACGAAGAGGACGA
AAAGGACGAGACCATGATCCCCGTGGACTACAAGACCGCCGGGCAGATCA
AGGATGACACCATCTTCGAGGAGGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig53882:136..262+

>mRNA_H-elongata_contig53882.12752.1 ID=mRNA_H-elongata_contig53882.12752.1|Name=mRNA_H-elongata_contig53882.12752.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig53882:136..262+ (Himanthalia elongata Himel1 dioecious)
ACAGGGCACGGCGGATCGGTCCGTGACCTTTCCGGCGACGAAGAGGACGA
AAAGGACGAGACCATGATCCCCGTGGACTACAAGACCGCCGGGCAGATCA
AGGATGACACCATCTTCGAGGAGGCGACAGGGCACGGCGGATCGGTCCGT
GACCTTTCCGGCGACGAAGAGGACGAAAAGGACGAGACCATGATCCCCGT
GGACTACAAGACCGCCGGGCAGATCAAGGATGACACCATCTTCGAGGAGG
CG
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