mRNA_H-elongata_contig53841.12742.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53841.12742.1
Unique NamemRNA_H-elongata_contig53841.12742.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A836CKL8_9STRA (DHC_N1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKL8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.650e-18
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 LSFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYRYGVMLKK 198
            +S  +  +LM+I K G+L VN+SE+LVTLLREVRQL+ELGH++P +ISKA  E E +YRYG+MLKK
Sbjct:  571 VSRQLRGRLMEISKAGVLDVNFSEKLVTLLREVRQLAELGHTVPPRISKAASEAERFYRYGIMLKK 636
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: D8LN03_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN03_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.590e-18
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 LSFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVI-EGEAYYRYGVML 192
            LS  +  +LMDIDKRGILVVNYSERLVTLLREVRQLSELGH+IPSKISK V+  G+A + +   L
Sbjct:  627 LSTQMRGKLMDIDKRGILVVNYSERLVTLLREVRQLSELGHAIPSKISKTVLPSGQAVFFFAASL 691
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A7S1CH85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH85_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.840e-15
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 LSFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYRYGVMLKK 198
            LS  +  +LM+ D  G ++VNYSE LV LLREVRQLSELG ++P K+++A  + E YYRYGV LKK
Sbjct:   95 LSLEMTGRLMEFDVDGNMIVNYSESLVILLREVRQLSELGMTLPPKVARAARDAETYYRYGVQLKK 160
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A8J2SHJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHJ0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.760e-15
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   22 QLMDIDKRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYRYGVMLKK 198
            +LM+I + G+L+VNYS RLV LLREVRQL+ELG ++P  I +A  +GE YYR+GV+LKK
Sbjct:  566 KLMEISQEGLLIVNYSSRLVQLLREVRQLTELGVTVPDSIKQAAKDGEQYYRFGVVLKK 624
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A2C9LQ20_BIOGL (DHC_N1 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LQ20_BIOGL)

HSP 1 Score: 70.1 bits (170), Expect = 6.790e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 LSFHVAKQLMDID-KRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYRYGVMLK 195
            LS   + +LM+++ K G L VNYS+RLVTLLREVRQLS +G S+P+KI +     + +YRYGV+LK
Sbjct:   58 LSLETSGKLMELNHKDGKLRVNYSDRLVTLLREVRQLSSIGFSVPAKIQQVAETAQKFYRYGVILK 123
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A7E4URM5_PANRE (Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4URM5_PANRE)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-13
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 LSFHVAKQLMDIDK-RGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYRYGVMLK 195
            +    + +LM +DK RG+L VNYS+RLV LLREVRQ+  LG+++PSKI + V  GE +YR+G++LK
Sbjct:  533 IGLETSGRLMVLDKDRGVLRVNYSDRLVRLLREVRQVQSLGYTVPSKIQQCVTTGEQFYRHGILLK 598
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-13
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    4 SFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHS----IPSKISKAVIEGEAYYRYGVMLKK 198
            +  ++ +LM+IDK G L VNYSE LVTLLR+VRQL ELGH     +P ++ +   E E YYRYGV LKK
Sbjct:  544 ALKLSGRLMEIDKSGNLTVNYSEFLVTLLRDVRQLMELGHESGKWVPPRVLEVATEAEKYYRYGVTLKK 612
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A5D6XL42_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL42_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.750e-13
Identity = 41/76 (53.95%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    4 SFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHS-----------IPSKISKAVIEGEAYYRYGVMLKK 198
            S  +  +LM IDK G LVVNYSE LVTLLR+VRQL+EL              +P K+ K   E E YYRYGVMLKK
Sbjct:  575 SLRLTGKLMQIDKNGDLVVNYSEFLVTLLRDVRQLTELAAQHQSTASKKDEWVPPKVRKVAEEAEKYYRYGVMLKK 650
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A6A5A240_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A240_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.990e-13
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 SFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHS----------IPSKISKAVIEGEAYYRYGVMLKK 198
            S  ++ +LM+IDK GIL VNYSE LVTLLR+VRQL+EL  +          +P ++ +  +E E YYRYGV LKK
Sbjct:  541 SLKLSGRLMEIDKAGILTVNYSEFLVTLLRDVRQLTELNATDPGSKQRAPWVPPRVLQVALEAEKYYRYGVTLKK 615
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BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Match: A0A3L6V0K6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V0K6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.010e-13
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:    4 SFHVAKQLMDIDKRGILVVNYSERLVTLLREVRQLSELGHS----------IPSKISKAVIEGEAYYRYGVMLKK 198
            S  ++ +LM+IDK GIL VNYSE LVTLLR+VRQL+EL  +          +P ++ +  +E E YYRYGV LKK
Sbjct:  284 SLKLSGRLMEIDKAGILTVNYSEFLVTLLRDVRQLTELNATDPGSKQRAPWVPPRVLQVALEAEKYYRYGVTLKK 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53841.12742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKL8_9STRA2.650e-1862.12DHC_N1 domain-containing protein n=1 Tax=Tribonema... [more]
D8LN03_ECTSI3.590e-1870.77Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S1CH85_9STRA1.840e-1557.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2SHJ0_9STRA4.760e-1561.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2C9LQ20_BIOGL6.790e-1454.55DHC_N1 domain-containing protein n=1 Tax=Biomphala... [more]
A0A7E4URM5_PANRE1.080e-1353.03Cytoplasmic dynein 2 heavy chain 1 n=1 Tax=Panagre... [more]
A0A485LI71_9STRA1.080e-1355.07Aste57867_21689 protein n=1 Tax=Aphanomyces stella... [more]
A0A5D6XL42_9STRA2.750e-1353.95Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A5A240_9STRA6.990e-1350.67Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6V0K6_9STRA7.010e-1350.67Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53841contigH-elongata_contig53841:3048..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog227086.JGI_V11_68554
Preferred nameDYNC2H1
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53841.12742.1prot_H-elongata_contig53841.12742.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53841 3075..3397 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.1446662-UTR-H-elongata_contig53841:3047..30741622930877.1446662-UTR-H-elongata_contig53841:3047..3074Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53841 3048..3074 +
1691679607.9613407-UTR-H-elongata_contig53841:3047..30741691679607.9613407-UTR-H-elongata_contig53841:3047..3074Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig53841 3048..3074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.1574605-CDS-H-elongata_contig53841:3074..31941622930877.1574605-CDS-H-elongata_contig53841:3074..3194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53841 3075..3194 +
1691679607.9821332-CDS-H-elongata_contig53841:3074..31941691679607.9821332-CDS-H-elongata_contig53841:3074..3194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53841 3075..3194 +
1622930877.174843-CDS-H-elongata_contig53841:3346..33971622930877.174843-CDS-H-elongata_contig53841:3346..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53841 3347..3397 +
1691679607.9972286-CDS-H-elongata_contig53841:3346..33971691679607.9972286-CDS-H-elongata_contig53841:3346..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53841 3347..3397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53841.12742.1

>prot_H-elongata_contig53841.12742.1 ID=prot_H-elongata_contig53841.12742.1|Name=mRNA_H-elongata_contig53841.12742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MDIDKRGILVVNYSERLVTLLREVRQLSELGHSIPSKISKAVIEGEAYYR
YGVMLKK
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mRNA from alignment at H-elongata_contig53841:3048..3397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53841.12742.1 ID=mRNA_H-elongata_contig53841.12742.1|Name=mRNA_H-elongata_contig53841.12742.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=350bp|location=Sequence derived from alignment at H-elongata_contig53841:3048..3397+ (Himanthalia elongata Himel1 dioecious)
TTATCTTTTCATGTGGCCAAGCAGCTTATGGATATCGATAAGAGGGGTAT
TCTCGTGGTAAATTATTCGGAACGCCTGGTCACTCTGCTGCGGGAAGTTC
GACAGCTCTCCGAGCTCGGCCACTCCATCCCTTCCAAGATATCTAAGGTT
ACGGGGGGGATCGCTCCGCGTTTCAGAAGTTGGTTCTAGTGACAAAATCA
AGTGGGGTGTTGTAGGTTGTGCCGACCTTCGGAGATACTTACTTGGCAGA
TCCATCGATCGGTCACCTTCTCACGTGGTACACTAAACGCCTCCGACAGG
CGGTGATTGAAGGAGAGGCATATTACCGCTACGGGGTGATGCTCAAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig53841:3048..3397+

>mRNA_H-elongata_contig53841.12742.1 ID=mRNA_H-elongata_contig53841.12742.1|Name=mRNA_H-elongata_contig53841.12742.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig53841:3048..3397+ (Himanthalia elongata Himel1 dioecious)
ATGGATATCGATAAGAGGGGTATTCTCGTGGTAAATTATTCGGAACGCCT
GGTCACTCTGCTGCGGGAAGTTCGACAGCTCTCCGAGCTCGGCCACTCCA
TCCCTTCCAAGATATCTAAGATGGATATCGATAAGAGGGGTATTCTCGTG
GTAAATTATTCGGAACGCCTGGTCACTCTGCTGCGGGAAGTTCGACAGCT
CTCCGAGCTCGGCCACTCCATCCCTTCCAAGATATCTAAGGCGGTGATTG
AAGGAGAGGCATATTACCGCTACGGGGTGATGCTCAAAAAGGCGGTGATT
GAAGGAGAGGCATATTACCGCTACGGGGTGATGCTCAAAAAG
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