mRNA_H-elongata_contig53831.12741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53831.12741.1
Unique NamemRNA_H-elongata_contig53831.12741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 7.260e-74
Identity = 137/289 (47.40%), Postives = 186/289 (64.36%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            G+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G +I+S DG NA NSM R   LPA+A   P +V Y  N+YAR   K LF ++ G ++VV S RGVQQGCNLG   +  G L I+KEF +KPPVPG K+  ++DD+   LP  ++  M AI+TVT W+QERL  +GI L+  KS+ L   G+    +T D       IGL+V   GM V+G+PVGT +F+R+FV +   G+ AEL+  L  ++  QAS+Q+LRLS V RL
Sbjct:  192 GEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRL 480          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 255 bits (652), Expect = 1.290e-73
Identity = 139/299 (46.49%), Postives = 195/299 (65.22%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTRE-------DVTEDIGLTVVGQGMRVLGVPVGTGQF-KRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRLS---RMRPP 858
            G K RP+A GD+ RR++G V CR+YG +LA++F+P GQYGV+V GG E++A  A L  ++G  +++ D  NA NSM R   LPALA+++PP++PYA N+YARE PK L+  D  G+ V+ SA GVQQGCNLGPLCYSAG LK+L++FR+ PPV GA++ +F+DD+ V+LP   +    A   VT W+Q  +   G++LNR KS+ L   G   +       +  E   L V   GMR++GVPVG   + KR  +D A  GE  +L++ +  ++  QAS QILR SA +RL+   R  PP
Sbjct: 1228 GDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTD-SGMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVLLPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIA-RGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPP 1524          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 8.500e-73
Identity = 137/289 (47.40%), Postives = 186/289 (64.36%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            G+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G +I+S DG NA NSM R   LPA+A   P +V Y  N+YAR   K LF ++ G ++VV S RGVQQGCNLG   +  G L I+KEF +KPPVPG K+  ++DD+   LP  ++  M AI+TVT W+QERL  +GI L+  KS+ L   G+    +T D       IGL+V   GM V+G+PVGT +F+R+FV +   G+ AEL+  L  ++  QAS+Q+LRLS V RL
Sbjct:  192 GEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRL 480          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 3.010e-72
Identity = 136/289 (47.06%), Postives = 182/289 (62.98%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            G+K RP+A G VLRR+I   FC +Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G +I+S DG NA NSM R   LPA+A   P +V Y  N+YAR   K LF ++ G ++VV S RGVQQGCNLG   +  G L I+KEF +KPPVPGAK+  ++DD+ V LP  ++  + AIATVT W+Q+ L  +GI L+  KS+ L   G+    +T D        GL+V   GM ++GVPVGT  F+R FV     G  AEL+R L  ++  QAS+Q+LRLS V RL
Sbjct:  192 GEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRL 480          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 1.030e-71
Identity = 136/289 (47.06%), Postives = 186/289 (64.36%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            G+K RP+A G VLRR+I   F R+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G +I+S DG NA NSM R   LPA+A + P +V Y  N+YAR   K LF ++ G ++VV S RGVQQGCNLG   +  G L I+KEF +KPPVPG K+  ++DD+   LP  ++  M AI+TVT W+QERL  +GI L+  KS+ L   G+    +T D       IGL+V   GM V+G+PVGT +F+R+FV +   G+ AEL+  L  ++  QAS+Q+LRLS V RL
Sbjct:   40 GEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRL 328          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 4.380e-71
Identity = 133/289 (46.02%), Postives = 179/289 (61.94%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            G+K RP+A G VLRR+I   FCR+Y   +A+ F+   Q+G  V GGVEI+A TA L  ++G +I+S DG NA NSM R   LPA+A   P +  Y  N+YAR   K LF ++ G ++VV S RGVQQGCNLG   +  G L I+KEF +KPPVPGAK+  ++DD+ V LP  ++  + AIATVT W+Q+ L  +GI L+  KS  L   G+    +T D        GL+V   GM ++GVPVGT  F+R FV     G  AEL+  L  ++  Q S+Q+LR+S V RL
Sbjct:   40 GEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSNVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGIPAELIPRLSTLDDPQTSYQLLRMSGVPRL 328          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.900e-38
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  331 LDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            ++ G +++V S RGVQQGCNLG   +S G L  +KEF  KPPVPGAK+  ++DD+ V LP  ++  + AIATVT W+Q+ L  +GI L+  KS+ L   G     +T D        GL+V   GM ++GVPVGT  F+R FV     G  AEL+R L  ++  QAS+Q+LRLS V RL
Sbjct:    1 MEDGSIEIVRSQRGVQQGCNLGGFGFSVGLLDTMKEFNDKPPVPGAKLIGYVDDLQVHLPPGLARNIQAIATVTNWIQDHLLQKGIELSLPKSKVLFPEGFFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRL 179          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.540e-31
Identity = 93/286 (32.52%), Postives = 148/286 (51.75%), Query Frame = 1
Query:    1 GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIMALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLYARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTRED----VTEDIGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPM---NQASFQILRLSAVSR 837
            G+K RPV  G   RR+I A   R++   L + F+   Q+GV+V+GGVE +A+ A L  + G  II +D +NA N+  R   +   A+ +P +V Y    Y       ++ +D G  + +E   GVQQG  +GP  +S   + I+ + + K    G    +++DDIT+ L     L   ++  +T  + E L   GI +NR KS AL   G    D    + E +GLTV G+G+ V+GVP+GT  + R+F  + +    AE +  ++P+    Q +  I  LS + R
Sbjct:  614 GEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLK---DLTEESVQAMTDLVDE-LAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQR 895          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.470e-27
Identity = 66/149 (44.30%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  430 LKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRLSRM 849
            +KEF +KPPVPG K+  ++DD+   LP  ++  M AI+TVT W+QERL  +GI L+  KS+ L   G+    +T D       IGL+V   GM V+G+PVGT +F+R+FV +   G+ AEL+  L  ++  QAS+Q+LRLS V RL ++
Sbjct:    1 MKEFNNKPPVPGVKLIGYVDDLQAHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQL 149          
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.130e-24
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  430 LKEFRSKPPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNRRKSQALLANGVTREDVTED-------IGLTVVGQGMRVLGVPVGTGQFKRDFVDEAVNGELAELVRALVPMN--QASFQILRLSAVSRL 840
            +KEF  KPPVPGAK+  ++DD+ V LP  ++  + AIATVT W+Q+ L  + I L+  KS+ L   G+    +T D        GL+V   GM ++GVPVGT  F+R FV     G  AEL+R L  ++  QAS+Q+LRLS V RL
Sbjct:    1 MKEFNDKPPVPGAKLIRYVDDLHVHLPPGLARNIQAIATVTNWIQDHLLRKVIELSLPKSKVLFPEGLFFSSLTNDEQRDLTKTGLSVAEGGMAIVGVPVGTECFQRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53831.12741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCM0_9PHAE7.260e-7447.40Reverse transcriptase domain-containing protein (F... [more]
A0A6P0N5L4_9CYAN1.290e-7346.49Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5LN63_9PHAE8.500e-7347.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE3.010e-7247.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE1.030e-7147.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE4.380e-7146.02Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K541_9PHAE2.900e-3845.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE1.540e-3132.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKJ7_9PHAE5.470e-2744.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL76_9PHAE4.130e-2444.52Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53831contigH-elongata_contig53831:1848..2744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue7.2e-12
Seed eggNOG ortholog400682.PAC_15702057
EggNOG free text desc.Ribonuclease H protein
EggNOG OGsKOG1075@1,KOG1075@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size876
Cds size876
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.0904784-CDS-H-elongata_contig53831:1847..25031622930877.0904784-CDS-H-elongata_contig53831:1847..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53831 1848..2503 +
1691679607.9392986-CDS-H-elongata_contig53831:1847..25031691679607.9392986-CDS-H-elongata_contig53831:1847..2503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53831 1848..2503 +
1622930877.1061532-CDS-H-elongata_contig53831:2524..27441622930877.1061532-CDS-H-elongata_contig53831:2524..2744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53831 2525..2744 +
1691679607.9505343-CDS-H-elongata_contig53831:2524..27441691679607.9505343-CDS-H-elongata_contig53831:2524..2744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53831 2525..2744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53831.12741.1prot_H-elongata_contig53831.12741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53831 1848..2744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53831.12741.1

>prot_H-elongata_contig53831.12741.1 ID=prot_H-elongata_contig53831.12741.1|Name=mRNA_H-elongata_contig53831.12741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
GQKARPVACGDVLRRVIGAVFCRRYGRNLADYFQPWGQYGVSVSGGVEIM
ALTATLGFEEGCSIISSDGANALNSMYRHIFLPALAEIVPPVVPYAVNLY
ARESPKPLFALDGGGVKVVESARGVQQGCNLGPLCYSAGALKILKEFRSK
PPVPGAKVGSFLDDITVVLPLEISLAMTAIATVTGWLQERLGAEGISLNR
RKSQALLANGVTREDVTEDIGLTVVGQGMRVLGVPVGTGQFKRDFVDEAV
NGELAELVRALVPMNQASFQILRLSAVSRLSRMRPPRPTTL*
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mRNA from alignment at H-elongata_contig53831:1848..2744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53831.12741.1 ID=mRNA_H-elongata_contig53831.12741.1|Name=mRNA_H-elongata_contig53831.12741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=897bp|location=Sequence derived from alignment at H-elongata_contig53831:1848..2744+ (Himanthalia elongata Himel1 dioecious)
GGACAAAAGGCGAGGCCGGTCGCGTGTGGTGACGTCCTCCGAAGAGTTAT TGGGGCCGTTTTCTGCCGCAGATACGGCAGAAACCTTGCAGACTACTTCC AGCCTTGGGGGCAGTATGGTGTTTCAGTGTCTGGCGGGGTAGAGATCATG GCCCTAACAGCCACACTGGGTTTCGAAGAGGGCTGCTCTATCATCTCCTC CGACGGGGCAAACGCCTTGAACAGCATGTACCGTCACATATTTCTACCAG CGCTAGCGGAAATTGTCCCTCCAGTGGTTCCCTACGCGGTAAACTTGTAC GCCCGAGAATCACCTAAACCGTTGTTTGCGTTAGATGGCGGAGGAGTAAA AGTGGTTGAGTCTGCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTC TTTGCTATAGCGCAGGGGCCCTCAAGATTCTGAAGGAGTTCAGGTCTAAG CCACCCGTACCGGGAGCAAAAGTGGGTTCTTTCCTCGACGACATCACTGT CGTTTTGCCACTGGAGATCTCCCTCGCCATGACAGCGATAGCAACAGTAA CCGGATGGTTACAAGAGCGATTGGGGGCAGAAGGAATTTCTTTGAACCGA AGAAAGTCACAGGCGCTGTTGGCAAATGGAGTAACACGAGAAGACGTCAC GGAAGAGTAACTCATAGCGGTGGACAGTATAGGACTCACGGTGGTTGGGC AGGGAATGCGAGTTCTAGGAGTACCGGTGGGGACAGGACAATTTAAGCGG GATTTTGTTGATGAAGCAGTGAACGGAGAACTAGCCGAGCTTGTCAGAGC GCTCGTCCCGATGAACCAGGCGAGCTTTCAGATTCTGCGCCTGTCTGCGG TTTCCCGTCTATCACGCATGAGGCCTCCGCGGCCTACGACGCTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig53831:1848..2744+

>mRNA_H-elongata_contig53831.12741.1 ID=mRNA_H-elongata_contig53831.12741.1|Name=mRNA_H-elongata_contig53831.12741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig53831:1848..2744+ (Himanthalia elongata Himel1 dioecious)
GGACAAAAGGCGAGGCCGGTCGCGTGTGGTGACGTCCTCCGAAGAGTTAT
TGGGGCCGTTTTCTGCCGCAGATACGGCAGAAACCTTGCAGACTACTTCC
AGCCTTGGGGGCAGTATGGTGTTTCAGTGTCTGGCGGGGTAGAGATCATG
GCCCTAACAGCCACACTGGGTTTCGAAGAGGGCTGCTCTATCATCTCCTC
CGACGGGGCAAACGCCTTGAACAGCATGTACCGTCACATATTTCTACCAG
CGCTAGCGGAAATTGTCCCTCCAGTGGTTCCCTACGCGGTAAACTTGTAC
GCCCGAGAATCACCTAAACCGTTGTTTGCGTTAGATGGCGGAGGAGTAAA
AGTGGTTGAGTCTGCGCGGGGCGTACAGCAAGGCTGCAACCTGGGCCCTC
TTTGCTATAGCGCAGGGGCCCTCAAGATTCTGAAGGAGTTCAGGTCTAAG
CCACCCGTACCGGGAGCAAAAGTGGGTTCTTTCCTCGACGACATCACTGT
CGTTTTGCCACTGGAGATCTCCCTCGCCATGACAGCGATAGCAACAGTAA
CCGGATGGTTACAAGAGCGATTGGGGGCAGAAGGAATTTCTTTGAACCGA
AGAAAGTCACAGGCGCTGTTGGCAAATGGAGTAACACGAGAAGACGTCAC
GGAAGAGGACAAAAGGCGAGGCCGGTCGCGTGTGGTGACGTCCTCCGAAG
AGTTATTGGGGCCGTTTTCTGCCGCAGATACGGCAGAAACCTTGCAGACT
ACTTCCAGCCTTGGGGGCAGTATGGTGTTTCAGTGTCTGGCGGGGTAGAG
ATCATGGCCCTAACAGCCACACTGGGTTTCGAAGAGGGCTGCTCTATCAT
CTCCTCCGACGGGGCAAACGCCTTGAACAGCATGTACCGTCACATATTTC
TACCAGCGCTAGCGGAAATTGTCCCTCCAGTGGTTCCCTACGCGGTAAAC
TTGTACGCCCGAGAATCACCTAAACCGTTGTTTGCGTTAGATGGCGGAGG
AGTAAAAGTGGTTGAGTCTGCGCGGGGCGTACAGCAAGGCTGCAACCTGG
GCCCTCTTTGCTATAGCGCAGGGGCCCTCAAGATTCTGAAGGAGTTCAGG
TCTAAGCCACCCGTACCGGGAGCAAAAGTGGGTTCTTTCCTCGACGACAT
CACTGTCGTTTTGCCACTGGAGATCTCCCTCGCCATGACAGCGATAGCAA
CAGTAACCGGATGGTTACAAGAGCGATTGGGGGCAGAAGGAATTTCTTTG
AACCGAAGAAAGTCACAGGCGCTGTTGGCAAATGGAGTAACACGAGAAGA
CGTCACGGAAGATATAGGACTCACGGTGGTTGGGCAGGGAATGCGAGTTC
TAGGAGTACCGGTGGGGACAGGACAATTTAAGCGGGATTTTGTTGATGAA
GCAGTGAACGGAGAACTAGCCGAGCTTGTCAGAGCGCTCGTCCCGATGAA
CCAGGCGAGCTTTCAGATTCTGCGCCTGTCTGCGGTTTCCCGTCTATCAC
GCATGAGGCCTCCGCGGCCTACGACGCTCTAGTATAGGACTCACGGTGGT
TGGGCAGGGAATGCGAGTTCTAGGAGTACCGGTGGGGACAGGACAATTTA
AGCGGGATTTTGTTGATGAAGCAGTGAACGGAGAACTAGCCGAGCTTGTC
AGAGCGCTCGTCCCGATGAACCAGGCGAGCTTTCAGATTCTGCGCCTGTC
TGCGGTTTCCCGTCTATCACGCATGAGGCCTCCGCGGCCTACGACGCTCT
AG
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