mRNA_H-elongata_contig5376.12734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5376.12734.1
Unique NamemRNA_H-elongata_contig5376.12734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5376.12734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5376contigH-elongata_contig5376:4488..5097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_004470.1
Exons2
Model size185
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.48674-CDS-H-elongata_contig5376:4487..46011622930876.48674-CDS-H-elongata_contig5376:4487..4601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5376 4488..4601 +
1691679607.69035-CDS-H-elongata_contig5376:4487..46011691679607.69035-CDS-H-elongata_contig5376:4487..4601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5376 4488..4601 +
1622930876.5060687-CDS-H-elongata_contig5376:5028..50971622930876.5060687-CDS-H-elongata_contig5376:5028..5097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5376 5029..5097 +
1691679607.701284-CDS-H-elongata_contig5376:5028..50971691679607.701284-CDS-H-elongata_contig5376:5028..5097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5376 5029..5097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5376.12734.1prot_H-elongata_contig5376.12734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5376 4488..5097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5376.12734.1

>prot_H-elongata_contig5376.12734.1 ID=prot_H-elongata_contig5376.12734.1|Name=mRNA_H-elongata_contig5376.12734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
ARAHPGLCGYFHAGAIAGVKTEDVERCGETTVNRFRNQACFDATRQLHAT
GTGVQVERKE*
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mRNA from alignment at H-elongata_contig5376:4488..5097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5376.12734.1 ID=mRNA_H-elongata_contig5376.12734.1|Name=mRNA_H-elongata_contig5376.12734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig5376:4488..5097+ (Himanthalia elongata Himel1 dioecious)
GCTAGAGCCCACCCAGGGCTCTGTGGATACTTTCACGCTGGTGCCATCGC
AGGCGTTAAGACGGAGGATGTCGAAAGGTGTGGCGAGACGACGGTGAATC
GCTTCCGTAACCAGGTGAGAACCCACATGTATATACTTGTACCTACGTCT
GTTTTCGGGAATTGTGGCGACACCGCCTAGCTACGACTCCTGCAATAATG
ATGTAGTACAGTAATCTCAGTAGAGGTGGCTGGACGAGCACACGACCTAC
TTGTAGTTTGTTTTAGTTTGATGACATATCGCACGAGGACGTCTTATGTT
AGATACACGTAGTTTACATGATATAGTGCCAACCACCATCACCATCAGAC
GACGTTGTTTCCAAAACCGCACAGGAGAGTGTTTTTGAGCTCTATATTTT
ATGCACTATATTCCATACTATATGCTCTTGAGGTACCGTTCTTACTCTGT
ATTGCGATCAACACGCAATAGCATAAATGAAGTACTGAACGCTCTACCTT
CACACACTCCGTAAATTCCGACATGTGCGCATAATCGCCAGGCTTGTTTT
GACGCGACGAGGCAGCTCCATGCAACGGGGACGGGAGTTCAAGTAGAGCG
TAAGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig5376:4488..5097+

>mRNA_H-elongata_contig5376.12734.1 ID=mRNA_H-elongata_contig5376.12734.1|Name=mRNA_H-elongata_contig5376.12734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig5376:4488..5097+ (Himanthalia elongata Himel1 dioecious)
GCTAGAGCCCACCCAGGGCTCTGTGGATACTTTCACGCTGGTGCCATCGC
AGGCGTTAAGACGGAGGATGTCGAAAGGTGTGGCGAGACGACGGTGAATC
GCTTCCGTAACCAGGCTAGAGCCCACCCAGGGCTCTGTGGATACTTTCAC
GCTGGTGCCATCGCAGGCGTTAAGACGGAGGATGTCGAAAGGTGTGGCGA
GACGACGGTGAATCGCTTCCGTAACCAGGCTTGTTTTGACGCGACGAGGC
AGCTCCATGCAACGGGGACGGGAGTTCAAGTAGAGCGTAAGGAGTAGGCT
TGTTTTGACGCGACGAGGCAGCTCCATGCAACGGGGACGGGAGTTCAAGT
AGAGCGTAAGGAGTAG
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