mRNA_H-elongata_contig53743.12733.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53743.12733.1
Unique NamemRNA_H-elongata_contig53743.12733.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: D7FMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMZ5_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 8.660e-145
Identity = 218/262 (83.21%), Postives = 244/262 (93.13%), Query Frame = 1
Query:    1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
            +CKKA+ VGR NRAGFADIGKAYARMAK+  +MGDK QAIAYLEDAQMEM+TKENER+I+TLQLE RKEAAA Y+DP+KALEAKERGNE FRAGQWA AI+EYEEAVKRDPTNAAYRNNLAAAL+KIGDFNAAKAACEKAL LD KYVKAWAKKGDIEFFMKEYHKALDSYKMGL VE NNSLCV+GV+KTT+KI++ +G+ADSERAAHAMADPEIQ ILTDP+VRQVL DFK+NP+ A+KAL N+DMRAKI+KL+AAGV+Q
Sbjct:  332 ECKKAVGVGRVNRAGFADIGKAYARMAKASSRMGDKSQAIAYLEDAQMEMYTKENERLIKTLQLEARKEAAAKYVDPEKALEAKERGNEQFRAGQWALAISEYEEAVKRDPTNAAYRNNLAAALTKIGDFNAAKAACEKALELDSKYVKAWAKKGDIEFFMKEYHKALDSYKMGLTVEPNNSLCVDGVRKTTVKINEGSGKADSERAAHAMADPEIQMILTDPVVRQVLNDFKDNPKEARKALGNADMRAKIDKLVAAGVVQ 593          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A835ZGH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH8_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.670e-100
Identity = 167/263 (63.50%), Postives = 200/263 (76.05%), Query Frame = 1
Query:    4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERA--AHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
            C+KAI+VGR NRA + D+ KAY R  K+  K GD  +AI +   AQ+E + KE ER+++  +LE RK  AA Y+DP+KAL AKERGNE+FRAG W  AI EYEEAVKRDP+NA YRNNLA+AL KI DFN AKAA EKAL LDPKYVKAWAKKGDIEF MKEYHKAL+S++ GL +E +NSLC  G++KT  KI  +    D ER   AHAMADPEIQ IL+DP+V+QVL D +++P   QKAL N  MRAKIEKLIAAG+LQ
Sbjct:  331 CQKAIDVGRANRASYEDLAKAYVRRGKAAAKAGDLGRAIEHYRSAQVEHYVKETERLLKNTELEWRKAQAAAYVDPEKALAAKERGNEHFRAGNWVDAIKEYEEAVKRDPSNAVYRNNLASALVKIMDFNGAKAAVEKALELDPKYVKAWAKKGDIEFVMKEYHKALESFQKGLDLENDNSLCKAGLQKTVAKIQSTGATPDEERERRAHAMADPEIQRILSDPVVQQVLQDAQQSPHELQKALANPGMRAKIEKLIAAGILQ 593          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: W7TJK4_9STRA (Stress-induced protein sti1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJK4_9STRA)

HSP 1 Score: 310 bits (794), Expect = 2.850e-99
Identity = 160/264 (60.61%), Postives = 206/264 (78.03%), Query Frame = 1
Query:    1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQ-ADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
            QC +AI+VGR NRA + D+ KA  R  K+  K GD   AI    DAQME   K  ER+I++ ++E +K+    Y+DP KA+EAK+RGNE FRAG+W  A+ EY EA++RDP+NAAY NNLAAALSK+ DF+AAK ACEKA++LDPKYVKAWAKKGDIEFFMKEYH+AL+SYK GL++E NNSLCV+G++KT+ +I  ++ Q AD ERAAH MADPE+QAIL DP+++QVL D +ENP+  ++AL +  + AKIEKLI AGVL+T
Sbjct:  308 QCDEAIQVGRANRAPYPDVAKALVRKGKALAKQGDLANAIEAYRDAQMEHFDKTVERLIKSTEVERKKQEELAYVDPAKAVEAKDRGNEAFRAGKWPDAVKEYNEAIRRDPSNAAYHNNLAAALSKLMDFSAAKTACEKAIALDPKYVKAWAKKGDIEFFMKEYHRALESYKHGLEIEPNNSLCVQGLQKTSARIRDASSQEADMERAAHGMADPEVQAILGDPVIQQVLRDLQENPREGRQALSDPGVAAKIEKLINAGVLRT 571          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7R9U847_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U847_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.810e-86
Identity = 147/260 (56.54%), Postives = 189/260 (72.69%), Query Frame = 1
Query:    4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVL 783
            C +A+EVGR NRA F  + K + R A+      D ++A+     AQ E   K+ ER ++ L+LE R+     Y++P+ A EAK RGNE FRAG +  AIAEYEEAVKRDP++A  RNNLAAAL K+GDFN A  + +KAL LD KYVKAWAKKGDIEF+MKEYHKA++SY+ GL V+++N LC +G++K    I+ S+G  D ER AHAMADPEIQ++L DP+V QV+ DFKENP  AQ+A+QN  M+AKI KL+AAGVL
Sbjct:  120 CDQAVEVGRANRAPFQSLAKPFVRKARIAKARNDYEEAMKQYHLAQREHRDKKIEREMKMLELEKRERERKAYVNPELAQEAKSRGNEKFRAGDFGGAIAEYEEAVKRDPSDAPIRNNLAAALQKVGDFNGALNSVKKALELDEKYVKAWAKKGDIEFYMKEYHKAMESYQKGLAVDDSNQLCRDGLQKVVAAINTSSGP-DEERLAHAMADPEIQSLLRDPVVVQVIRDFKENPSAAQQAMQNPGMQAKINKLMAAGVL 378          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S4RC86_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC86_9STRA)

HSP 1 Score: 277 bits (708), Expect = 2.780e-86
Identity = 152/266 (57.14%), Postives = 189/266 (71.05%), Query Frame = 1
Query:    4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
            C KA+EVG+ N A + D  KAY R AK+  K  D  +AI    +AQ+E + K  ERM++T++LE RK A   Y D +KA EAK+RGN++FRA +WAKA+  YEEAVKR P NA  RNNLAAAL KI DFN AK   E+A+ +DPKY KAWA+KGDIE  MKE HKALDSYK GL ++ +N+ C EG++K T +I+  A     +   ERA H +ADPEIQAI+ DP+V+QVL DF ENP  A +A+ N  MRAKIEKLIAAGVLQT
Sbjct:  317 CLKAVEVGKANMAPYEDRAKAYTRCAKAYQKKKDLDKAIEMCNEAQLECYDKATERMMKTMELERRKAAVLAYQDDEKAEEAKQRGNDHFRAKEWAKAVEAYEEAVKRAPKNAPIRNNLAAALCKIMDFNGAKMHIEEAVHIDPKYTKAWARKGDIEMVMKENHKALDSYKAGLAIDPDNAACKEGLRKCTAQINYGAATMTEEEKQERAQHGLADPEIQAIIQDPVVQQVLRDFNENPNAANQAMNNPSMRAKIEKLIAAGVLQT 582          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A6U3AUD0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3AUD0_9STRA)

HSP 1 Score: 268 bits (686), Expect = 7.990e-86
Identity = 144/266 (54.14%), Postives = 194/266 (72.93%), Query Frame = 1
Query:    4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKI----SQSAGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
            C KA+EVG+ +RA F D GKAY R AK+  K  D + AI   ++AQ+E + K+ +R+++T++LE +K  A  Y   +KA EAK+RGNE+FR  +W  A+  YEEAVKR P NA  RNNLAAAL KI DF+ A+ + E AL LDPKYVKAWA+KGDIE +MKEYHKA++SYK GL+++ +N  C EG++K  M+I    S        E+AAHAMADPEIQ+IL DP+++Q+L DF ENP  AQ+A+Q+  +RAKIEKLIA+G+++T
Sbjct:   82 CLKAVEVGKEHRAPFEDRGKAYTRAAKAYQKKKDLENAIKMCQEAQLENYDKDTQRLLKTMELEKKKADALAYQSDEKAEEAKQRGNEHFRNKEWGPAVEAYEEAVKRAPKNAPIRNNLAAALCKIMDFSGAQRSIEVALELDPKYVKAWARKGDIEMYMKEYHKAMESYKKGLELDPDNKSCKEGLQKVQMQINYGRSNMTEAEKKEQAAHAMADPEIQSILQDPVMQQILKDFGENPNAAQQAMQDPTIRAKIEKLIASGIIET 347          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A812U018_SYMMI (HOP3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U018_SYMMI)

HSP 1 Score: 272 bits (695), Expect = 2.950e-85
Identity = 150/263 (57.03%), Postives = 188/263 (71.48%), Query Frame = 1
Query:    1 QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAGQ-ADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
            QC++AI+ GR+ RA + DI K Y RMA + +K  D   A      AQ E   K  ER ++ L+LE +++A   YI+P   +EAKERGN  FR   +  AI EYE+A+ RD TNAAYRNNLAAAL K+GDFN AK   EK+L LD +YVKAWAKKGDIEFFMKEYH+ALDSYK GL++E +N+LC  G+ KT   I+ +  +  + ERAAHAMADPEIQ IL DPMVRQ L D +ENPQ AQ+AL +  +RAKI+KLIA+G+LQ
Sbjct:  237 QCQEAIDFGRSKRAPYEDIAKLYHRMAAAYLKRDDFDTAKECYTKAQTEHFDKAIERKVKNLELEYKQKAVKAYINPALGVEAKERGNTAFRENDFPTAIREYEDAIMRDSTNAAYRNNLAAALLKMGDFNGAKREVEKSLELDNRYVKAWAKKGDIEFFMKEYHRALDSYKAGLQIEPDNALCTRGLSKTMAHINTTQSEEVNKERAAHAMADPEIQFILQDPMVRQTLQDLQENPQSAQRALNDPVIRAKIDKLIASGILQ 499          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7R9ZH81_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZH81_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.930e-85
Identity = 145/261 (55.56%), Postives = 190/261 (72.80%), Query Frame = 1
Query:   19 EVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQT 789
            EVG+ NRA F +  +A  R A++  K GD  +AI   ++AQ+E + K  +R+++TL+LE +K+ A +Y D +KA EAK+RGN +FR  +WA A+ EYEEAVKR P NA  RNNL+AAL KI DFN AK   E+AL LDP+YVKAWA+KGDIE  MKEYHKA+DSYK GL++E++N  C  G++K    I+QSA     +   ERA HAMADPEIQAIL DP+V+QVL DF ENP  A +A+++  MR KIEKLIA+G++QT
Sbjct:   49 EVGKENRAPFEERARALTRAARAAQKKGDMAKAIEMCKEAQLENYDKATDRLLKTLELEKKKKDALDYQDDEKAEEAKQRGNAHFRNKEWADAVKEYEEAVKRAPKNAPIRNNLSAALCKIMDFNGAKRQIEEALELDPRYVKAWARKGDIEVVMKEYHKAMDSYKAGLEIEKDNPTCKAGLQKVMGLINQSASTMTEEERKERAEHAMADPEIQAILADPVVQQVLRDFNENPNAANQAMRDPFMRGKIEKLIASGIVQT 309          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S2V2W3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W3_9STRA)

HSP 1 Score: 260 bits (664), Expect = 9.970e-85
Identity = 133/188 (70.74%), Postives = 159/188 (84.57%), Query Frame = 1
Query:  229 PDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQS--AGQADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQ 786
            P+K +EAKE+GNE FRAG++A+AI EY EA KRDPTNAAY NNLAAALSK+GDFN AK ACEKAL LDP YVKAWAKKGDIEFFMKEYHKAL+SYK GL+VE NN LC +G+++T  KI+++  +G+ D ERA H MADPE+QAIL+DP++R VL DF+ENP  AQKAL +  +RAKIEKL+AAGVLQ
Sbjct:    1 PEKGVEAKEKGNEFFRAGKFAEAINEYREATKRDPTNAAYHNNLAAALSKLGDFNTAKEACEKALQLDPTYVKAWAKKGDIEFFMKEYHKALESYKKGLEVESNNPLCQQGLQRTAQKINEANMSGEVDMERAQHGMADPEVQAILSDPVIRNVLRDFQENPMEAQKALADPTVRAKIEKLMAAGVLQ 188          
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Match: A0A7S2I8L0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8L0_9STRA)

HSP 1 Score: 262 bits (669), Expect = 4.770e-84
Identity = 148/267 (55.43%), Postives = 182/267 (68.16%), Query Frame = 1
Query:    4 CKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEMHTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAIAEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKAWAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG----QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRAKIEKLIAAGVLQTG 792
            C+KA+EVG+ N A F D  KA  R AK+  K  D   AI   + AQ+E + K  ERM++TL+LE RK +   Y D +KA EAK+RGNE FRA  WA+A+      VKR P NA  RNNLAAAL KI DFN AK   + A+ LDPKYVKAWA+KGDIE  MKE HKA+DSYK GL ++ NN+ C EG++K +  I+  A     +   ERA H +ADPEIQAI+ DPMV+QVL DF ENP  A +A+++  MR KIEKLIAAGVLQTG
Sbjct:   24 CQKAVEVGKANMAPFEDRAKALTRCAKAYQKKKDLDNAIEMCKAAQLESYDKATERMLKTLELERRKASVLAYQDDEKAEEAKQRGNEAFRAKNWAEAVXXXXXXVKRAPKNAPIRNNLAAALCKIMDFNGAKNHIQVAIELDPKYVKAWARKGDIEMVMKENHKAMDSYKAGLAIDPNNAACKEGLRKCSAAINYGAANMTEEEKRERAEHGLADPEIQAIIQDPMVQQVLKDFNENPNAANQAMRDPHMRGKIEKLIAAGVLQTG 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53743.12733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMZ5_ECTSI8.660e-14583.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGH8_9STRA1.670e-10063.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TJK4_9STRA2.850e-9960.61Stress-induced protein sti1 n=2 Tax=Monodopsidacea... [more]
A0A7R9U847_9STRA1.810e-8656.54Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4RC86_9STRA2.780e-8657.14Hypothetical protein n=5 Tax=Ditylum brightwellii ... [more]
A0A6U3AUD0_9STRA7.990e-8654.14Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A812U018_SYMMI2.950e-8557.03HOP3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A7R9ZH81_9STRA3.930e-8555.56Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2V2W3_9STRA9.970e-8570.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2I8L0_9STRA4.770e-8455.43Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53743contigH-elongata_contig53743:164..2588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.3
Seed ortholog evalue8e-119
Seed eggNOG ortholog2880.D7FMZ5
Preferred nameSTI1
KEGG koko:K09553
KEGG Pathwayko05020,map05020
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0030234,GO:0030544,GO:0031072,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042030,GO:0042886,GO:0043086,GO:0044092,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0050790,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0097159,GO:0098772,GO:1901363
EggNOG free text desc.positive regulation of catalytic activity in other organism involved in symbiotic interaction
EggNOG OGsCOG0457@1,KOG0548@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide TPR1
Ec32 orthologEc-25_002880.1
Exons8
Model size795
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53743.12733.1prot_H-elongata_contig53743.12733.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53743 164..2588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.2943964-CDS-H-elongata_contig53743:163..3041622930876.2943964-CDS-H-elongata_contig53743:163..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 164..304 +
1691679607.5970275-CDS-H-elongata_contig53743:163..3041691679607.5970275-CDS-H-elongata_contig53743:163..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 164..304 +
1622930876.3170617-CDS-H-elongata_contig53743:543..6151622930876.3170617-CDS-H-elongata_contig53743:543..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 544..615 +
1691679607.6187685-CDS-H-elongata_contig53743:543..6151691679607.6187685-CDS-H-elongata_contig53743:543..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 544..615 +
1622930876.3521893-CDS-H-elongata_contig53743:829..9311622930876.3521893-CDS-H-elongata_contig53743:829..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 830..931 +
1691679607.629912-CDS-H-elongata_contig53743:829..9311691679607.629912-CDS-H-elongata_contig53743:829..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 830..931 +
1622930876.3791754-CDS-H-elongata_contig53743:1241..13431622930876.3791754-CDS-H-elongata_contig53743:1241..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1242..1343 +
1691679607.6405509-CDS-H-elongata_contig53743:1241..13431691679607.6405509-CDS-H-elongata_contig53743:1241..1343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1242..1343 +
1622930876.3971074-CDS-H-elongata_contig53743:1518..16201622930876.3971074-CDS-H-elongata_contig53743:1518..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1519..1620 +
1691679607.6510725-CDS-H-elongata_contig53743:1518..16201691679607.6510725-CDS-H-elongata_contig53743:1518..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1519..1620 +
1622930876.4151897-CDS-H-elongata_contig53743:1765..18371622930876.4151897-CDS-H-elongata_contig53743:1765..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1766..1837 +
1691679607.6616573-CDS-H-elongata_contig53743:1765..18371691679607.6616573-CDS-H-elongata_contig53743:1765..1837Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 1766..1837 +
1622930876.4313335-CDS-H-elongata_contig53743:2015..21471622930876.4313335-CDS-H-elongata_contig53743:2015..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 2016..2147 +
1691679607.6717346-CDS-H-elongata_contig53743:2015..21471691679607.6717346-CDS-H-elongata_contig53743:2015..2147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 2016..2147 +
1622930876.4460442-CDS-H-elongata_contig53743:2516..25881622930876.4460442-CDS-H-elongata_contig53743:2516..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 2517..2588 +
1691679607.6810496-CDS-H-elongata_contig53743:2516..25881691679607.6810496-CDS-H-elongata_contig53743:2516..2588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53743 2517..2588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53743.12733.1

>prot_H-elongata_contig53743.12733.1 ID=prot_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
QCKKAIEVGRTNRAGFADIGKAYARMAKSCIKMGDKKQAIAYLEDAQMEM
HTKENERMIRTLQLEVRKEAAANYIDPDKALEAKERGNENFRAGQWAKAI
AEYEEAVKRDPTNAAYRNNLAAALSKIGDFNAAKAACEKALSLDPKYVKA
WAKKGDIEFFMKEYHKALDSYKMGLKVEENNSLCVEGVKKTTMKISQSAG
QADSERAAHAMADPEIQAILTDPMVRQVLTDFKENPQHAQKALQNSDMRA
KIEKLIAAGVLQTG*
back to top

mRNA from alignment at H-elongata_contig53743:164..2588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53743.12733.1 ID=mRNA_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2425bp|location=Sequence derived from alignment at H-elongata_contig53743:164..2588+ (Himanthalia elongata Himel1 dioecious)
CAGTGCAAGAAGGCTATAGAAGTAGGCAGAACAAACCGCGCCGGATTCGC CGACATCGGCAAAGCGTACGCTCGAATGGCAAAGTCGTGCATCAAGATGG GCGACAAGAAGCAGGCCATAGCGTATCTCGAGGACGCTCAGGTACCCCGT CGTTTCGGTTTTGTATTGCTCGGGTTCCCCCGTATTGCACAAACCATCTA GAGCTAGCTACCATATCGTCGGTGGATTTTGAGGCGCTCCTCTCCTTTAA GCTTCTGTGACCAAGCTTGTGCCTGAAGTTACTGTCCCGGGAATTGTACA CTTTCGTGAGTATGGGATTGGCCACCACCGAGTCTCCTTGTTAAGTGCTT GCACCGTACAATACAACTCCCTTGGTGCAGATGGAGATGCACACGAAGGA AAATGAGCGTATGATCAGGACCCTACAACTCGAAGTTCGCAAAGAAGCAG CGGTAAGTCAAATCGGGAGCGCATCTGTCCATTATACTCCGAGTAAGACT TTCATAACTAATAGCTCTCTTTCATAACTAATAGCTCTCTTTCATAACTA TTAGCTCTGTCCTTACCACTGTGTATGAATACAGGTAATTTGTCCATTCC GCGGAAGACACTACTTGATACCTAAACTAATGGTGCATGTATTATGCATG TATTATGTCCATCCAGGCTAATTATATAGACCCCGACAAGGCTCTAGAAG CGAAGGAGAGAGGTAATGAAAACTTCCGGGCGGGGCAATGGGCGAAGGCC ATTGCCGAATACGAAGAGGTGAGCGTATCCTATTTTTACCCTTCGTTATG AGAGATGTCTATCGGTTTAAAATGTGTTTTCCACCCATTTTGACTCGAAG CCGGGTTTCACCATGTTGAGGACTATTCAAGGCTGTTTTGGTGTCTTGGA AGAAGGAAATATGACTAGTCGAGTCGCGTCGCCGATCACAATTTTAAGGT TGAAGAAAATGCGCATGGTAATTGTCCGATGTCATCTGGATTTTCATCTG ATATTTGACGCAGTGGTAACAAGCCCTGCCTCTTCTCTTAAAACCTTTTG TGATTTCTGCATGTTTCGGTCCGACCAGGCTGTAAAGCGTGATCCCACCA ATGCGGCCTACCGCAACAACCTGGCTGCGGCGCTGTCCAAGATCGGCGAC TTCAACGCGGCTAAAGCAGCCTGCGAAAAGGTAGCCATCATCGAAATAAT GTGACTAAGTAGATAAGAAATGGCTACCGCATGTGTAGCACACACAAAAC CGATTGCTAATCTAGGACGAGCGATATTGTTTATTAGTGCATACGCATGT CCGCCTGTAGGTTTTGACGTCTTAGGCCCCCACTCTTTGTTGTCGCTTTT TGCAGGCGTTGTCGCTTGACCCCAAGTACGTGAAGGCGTGGGCGAAGAAG GGAGACATCGAGTTTTTCATGAAGGAGTACCACAAAGCACTCGACAGTTA TAAGATGGTGGGTCCTGTCCAAATATTTTGTTAAAGTCCACACGTCATCA TATGCACCCGCAAGCCAATGTCAATATCAATTCGCAAATCCCAGTACGTT GTAATGAAACGGCTTTTGGCAACGACTGTATGTATCCCTTGTGTTTATCC AGGGCTTGAAGGTGGAGGAAAACAACAGTCTGTGCGTGGAGGGGGTGAAG AAGACGACAATGAAAATCAGTCAGGTAAATAAGCGAAACAGGGGCAAATT TACTGGTCTTTTTTTTTCAGAAAATGTTTTTCAATCATCCAGGGACAGCG GCAGGGTATATCGTGAAGAGGGAATACATGTGCTTGAACTTTAATTTAAG GTATGAAAAGCCCACGCGTCTACGCGTCTACTATACACTGTCCTCGATTC AGAGCGCTGGGCAAGCAGACTCGGAGCGAGCGGCTCATGCCATGGCCGAC CCAGAGATACAGGCGATCCTCACGGATCCCATGGTTCGGCAGGTCCTCAC TGACTTCAAGGAAAATCCCCAACACGCTCAAAAGGTTAGCTGTTTTCCGC TATCAATCGCTCTAATACCCATCTGGAAGTTACAACTGCTCGTAGCAAGT CTTGTAGGTTATGGGTTCACCCCCACCCCCTGTTTCGTTAATGAATTATC CCGAGCGACCAGTTCGTGTGATAATGTTTGGGGCATCACATGAGTCCTCA AAGCTATGTCTCGCTTTCATTGTAACTAGAGCATTCCACTTCTATCAAGC AGTTTGGTATATTACCGCATCTTTAGTTTATCCCGTTTTAGATATAATTT GATTTGTTATGATTATTTGAAATACTCACAACCGCGCTTCTAATCCTTTC CCGGCTTTAAATATACTGATATCTTACGCACACGACGAACTGGATCCTCG AAGGCCTTGCAAAACTCTGATATGAGGGCGAAGATCGAGAAGCTCATAGC AGCAGGAGTCCTCCAGACAGGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53743:164..2588+

>mRNA_H-elongata_contig53743.12733.1 ID=mRNA_H-elongata_contig53743.12733.1|Name=mRNA_H-elongata_contig53743.12733.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig53743:164..2588+ (Himanthalia elongata Himel1 dioecious)
CAGTGCAAGAAGGCTATAGAAGTAGGCAGAACAAACCGCGCCGGATTCGC
CGACATCGGCAAAGCGTACGCTCGAATGGCAAAGTCGTGCATCAAGATGG
GCGACAAGAAGCAGGCCATAGCGTATCTCGAGGACGCTCAGCAGTGCAAG
AAGGCTATAGAAGTAGGCAGAACAAACCGCGCCGGATTCGCCGACATCGG
CAAAGCGTACGCTCGAATGGCAAAGTCGTGCATCAAGATGGGCGACAAGA
AGCAGGCCATAGCGTATCTCGAGGACGCTCAGATGGAGATGCACACGAAG
GAAAATGAGCGTATGATCAGGACCCTACAACTCGAAGTTCGCAAAGAAGC
AGCGATGGAGATGCACACGAAGGAAAATGAGCGTATGATCAGGACCCTAC
AACTCGAAGTTCGCAAAGAAGCAGCGGCTAATTATATAGACCCCGACAAG
GCTCTAGAAGCGAAGGAGAGAGGTAATGAAAACTTCCGGGCGGGGCAATG
GGCGAAGGCCATTGCCGAATACGAAGAGGCTAATTATATAGACCCCGACA
AGGCTCTAGAAGCGAAGGAGAGAGGTAATGAAAACTTCCGGGCGGGGCAA
TGGGCGAAGGCCATTGCCGAATACGAAGAGGCTGTAAAGCGTGATCCCAC
CAATGCGGCCTACCGCAACAACCTGGCTGCGGCGCTGTCCAAGATCGGCG
ACTTCAACGCGGCTAAAGCAGCCTGCGAAAAGGCTGTAAAGCGTGATCCC
ACCAATGCGGCCTACCGCAACAACCTGGCTGCGGCGCTGTCCAAGATCGG
CGACTTCAACGCGGCTAAAGCAGCCTGCGAAAAGGCGTTGTCGCTTGACC
CCAAGTACGTGAAGGCGTGGGCGAAGAAGGGAGACATCGAGTTTTTCATG
AAGGAGTACCACAAAGCACTCGACAGTTATAAGATGGCGTTGTCGCTTGA
CCCCAAGTACGTGAAGGCGTGGGCGAAGAAGGGAGACATCGAGTTTTTCA
TGAAGGAGTACCACAAAGCACTCGACAGTTATAAGATGGGCTTGAAGGTG
GAGGAAAACAACAGTCTGTGCGTGGAGGGGGTGAAGAAGACGACAATGAA
AATCAGTCAGGGCTTGAAGGTGGAGGAAAACAACAGTCTGTGCGTGGAGG
GGGTGAAGAAGACGACAATGAAAATCAGTCAGAGCGCTGGGCAAGCAGAC
TCGGAGCGAGCGGCTCATGCCATGGCCGACCCAGAGATACAGGCGATCCT
CACGGATCCCATGGTTCGGCAGGTCCTCACTGACTTCAAGGAAAATCCCC
AACACGCTCAAAAGAGCGCTGGGCAAGCAGACTCGGAGCGAGCGGCTCAT
GCCATGGCCGACCCAGAGATACAGGCGATCCTCACGGATCCCATGGTTCG
GCAGGTCCTCACTGACTTCAAGGAAAATCCCCAACACGCTCAAAAGGCCT
TGCAAAACTCTGATATGAGGGCGAAGATCGAGAAGCTCATAGCAGCAGGA
GTCCTCCAGACAGGTTGAGCCTTGCAAAACTCTGATATGAGGGCGAAGAT
CGAGAAGCTCATAGCAGCAGGAGTCCTCCAGACAGGTTGA
back to top