mRNA_H-elongata_contig53736.12732.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 209 bits (532), Expect = 4.960e-61 Identity = 111/210 (52.86%), Postives = 135/210 (64.29%), Query Frame = 2
Query: 2 HSFFDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMK--------------------------------HAAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAAAIVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDR 535
H FFD ++LD+KWFYICK GQRYY YEG L +RKVQHKSH++K AA+RN RN AG M+TH VE+N YK KL VFPD+R KFP++ I+FAQ++NAPG R +DP+VV A+ I+L+NQ PN PD NILDLGFFNSIQSL DRTTPTT++ELV EVERA Q +T+ R
Sbjct: 52 HHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPIIFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFFNSIQSLQDRTTPTTVEELVAEVERALWAQKPETLGR 260
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE) HSP 1 Score: 174 bits (440), Expect = 8.790e-52 Identity = 92/141 (65.25%), Postives = 109/141 (77.30%), Query Frame = 2
Query: 137 AAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAAAIVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTV 559
AA+RNSRN AG ++T VE+N TYKEKLI V PD+R KFPA + VFAQ+D+APG RV DPE+V A+ QGR I+LINQ N PD N+LDLGFFNSIQSL DRTTPTTID+LV EVERAF Q+ +DRVWT +Q+V
Sbjct: 37 AAQRNSRNRAAGTIVTRSVEVNRVTYKEKLINNVLPDIRAKFPAVSTVFAQQDSAPGHRV-MDPEIVAAA-AQGRRIELINQPANSPDMNVLDLGFFNSIQSLQDRTTPTTIDQLVAEVERAFWAQSPGAVDRVWTTLQSV 175
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 166 bits (419), Expect = 7.840e-47 Identity = 86/169 (50.89%), Postives = 116/169 (68.64%), Query Frame = 2
Query: 128 MKHAAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAAA--IVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQTA 628
++ AA+RNSRN AG M T VE+ +K K++ VFP ++ ++P ++ Q DN P R++ DP+VV A G I LINQ N PDTNILDLGFFN++QSL DR TP T+DE +TEV+RAF +Q+ T D+VW +Q +L +IILAKG+NTFKLP+L+K A
Sbjct: 99 VQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKKDNA 266
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: UPI000B8A831B (uncharacterized protein LOC110788518 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A831B) HSP 1 Score: 144 bits (362), Expect = 4.530e-39 Identity = 79/212 (37.26%), Postives = 122/212 (57.55%), Query Frame = 2
Query: 5 SFFDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMKHAAERNSRNSTAGAMLTHGVE-INPWTYKEKLIILVFPDVRVKFPA--AAIVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQTAE 631
+F+D V++D+KWFY+ K + Y+ G + R Q K+HI K A+R+S+N G +T+ + +N ++EKL+ + P +R K+PA A + Q DNA + DP+ + + + G QSP PD NILDLGFF SIQSL ++ P +DE++T+VE AF + + VW Q V+ EII KG + LP+++K+ E
Sbjct: 14 TFYDYVHIDEKWFYLKKANLKVYLAPGEEHPYRTAQSKNHIPKEPAKRSSKNRARGTPITYANQGVNKEVFREKLLTKMLPAIRQKWPADSAKTIIIQADNANPHIGAGDPQFLQEANIDGFTFIWQPQSPRSPDLNILDLGFFRSIQSLYEKKMPKDLDEMITDVEEAFDELHPKVLSNVWYSYQYVMQEIIKVKGGGNYVLPHVKKKQLE 225
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE) HSP 1 Score: 132 bits (333), Expect = 9.580e-36 Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 2
Query: 293 DNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQTA 628
DN P ++ DP+VV A G I LINQ N P TNILDLGFFN+IQSL DRTTP T+DE + EV+RAF +Q+ T+D+VW +Q +L EIILAKGDNT KLP+L+K A
Sbjct: 4 DNKPSHCINADPDVVAAGTADGWDIRLINQPSNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESLQAILQEIILAKGDNTIKLPHLKKDKA 115
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1) HSP 1 Score: 128 bits (321), Expect = 6.000e-32 Identity = 83/235 (35.32%), Postives = 119/235 (50.64%), Query Frame = 2
Query: 11 FDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMK--------------------------HAAERNSRNSTAGAMLTHGVE-INPWTYKEKLIILVFPDVRVKFPAAA-IVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQTAE 631
F++V++D+KWFY+CK +YY+ R+V+ K I K A+RNS+N AG M+T E I K LI V P + K+P + Q+DNA + E + A+ G I LI Q PN PD N+LDLGFF SIQ L PTTI+ELV V+++F + + ++RV+ QT + EI+ KGDN +K+P++ K E
Sbjct: 100 FNVVHIDEKWFYMCKTTTKYYLVHDEPEPTRRVKSKRFITKAMFLAAVARPRNGFSGKIGIFPFTFIEPAKRNSKNRVAGTMVTKVDESITKEKVKSCLIEKVIPAIHAKWPQGMRTIIIQQDNAKPHIDCNNAEFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLE 334
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: W4FB73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FB73_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.450e-31 Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 2
Query: 2 HSFFDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMK----------------------HAAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPA--AAIVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRK 619
H D V++D+KWFYI K ++YY++ D+ RK K+HI K A+R S+N G +T + + Y+ +I V P +R+K+P ++ Q+DNA +DP+VV A L G I L +Q P PD N+LDLGFFN+IQSL + I++LV V A+ + +D+ + +Q V+ E A GDN + LP+ K
Sbjct: 119 HDMLDRVHIDEKWFYITKLNRKYYLWHDEDVPHRKCHSKAHIQKVMFVTAVARPRYDPAQRKMWDGKEAKRTSKNRVRGTPITVPMTVTKDIYRRFIIEHVIPSIRLKWPGHRGNTIYIQKDNARPHVSIRDPDVVAAGALHGWDIRLDSQPPMSPDFNVLDLGFFNAIQSLQHQKMSRCIEDLVAAVHEAYVEMDWKILDKTFMTLQNVMKEAFKANGDNVYALPHASK 348
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A485K3F1_9STRA (Aste57867_630 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K3F1_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.480e-29 Identity = 76/212 (35.85%), Postives = 112/212 (52.83%), Query Frame = 2
Query: 2 HSFFDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMK--HAAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAA--AIVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQT 625
H D V +D+KWFYI K ++YY++ D T + + + +R S+N G +T + + Y+ L+ LVFP +R ++P A ++ Q DNA + DPEV+ A G I L +Q PD NILDLGFFN+IQSL ID+LV V AF + +D+ + +Q V+ E + GDN +KLP+L+K T
Sbjct: 164 HDMMDRVNIDEKWFYITKVNRKYYMWHDEDTTSSDTRCGTARLDVGRLLKRRSKNRDRGTPVTVPITVTKNVYRHYLVDLVFPAIRKQWPGRRDAPIYVQHDNAWPHVENDDPEVLAAGAQGGWTIRLSSQPAMSPDFNILDLGFFNAIQSLQHHKVTRCIDDLVAAVHEAFGELKCAVLDKAFMTLQKVVEESLKMDGDNVYKLPHLKKDT 375
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6G0WUD8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD8_9STRA) HSP 1 Score: 118 bits (295), Expect = 8.910e-28 Identity = 76/240 (31.67%), Postives = 121/240 (50.42%), Query Frame = 2
Query: 2 HSFFDIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMKHA--------------------------AERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAAA----IVFAQEDNAPGRRVSQDPEVVTASRLQGRMIDLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRKQTAE 631
++ +D+V+LD+KWF++ K +++ ++ + R VQ+KSHI K +R S+N AG ++ V + Y+E L LV P ++ K+ + +F Q+DNAP D E++ A G I++ Q PD N+LDLGFFNSIQ+L R TI+EL+ V+ +F D T+++ + + V+ II KGDN FK+P +K E
Sbjct: 155 YASYDVVHLDEKWFFMAKIRRKFLLWHDEAMVPRHVQNKSHITKVMFLVAVARPRGDWDGKVGCWPFVTKVQGQRTSKNRRAGELVLTPVSVTGAIYREYLCDLVLPAIKNKWVWPSNEHGTIFVQQDNAPAHSRLDDAEILAACNSDGWNIEMRFQPAKSPDLNVLDLGFFNSIQALQQRLECGTIEELIDAVKISFHDLERLTLEKTFRTLHRVVQVIIEFKGDNRFKIPRSKKNEDE 394
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Match: A0A6A4ZIA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZIA5_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.920e-27 Identity = 77/236 (32.63%), Postives = 118/236 (50.00%), Query Frame = 2
Query: 14 DIVYLDKKWFYICKHGQRYYIYEG*DLTVRKVQHKSHIMK-------------------------------HAAERNSRNSTAGAMLTHGVEINPWTYKEKLIILVFPDVRVKFPAAAIVFAQEDNAPGRRVSQDPEVVTASRLQGRMI---DLINQSPNCPDTNILDLGFFNSIQSL*DRTTPTTIDELVTEVERAFSDQTSDTIDRVWTIMQTVLPEIILAKGDNTFKLPYLRK 619
D V++D+KWFY+ + +++Y+YE + R V+ K I K A RNS+N G M+T ++ Y ++ V P ++ KFP + V Q+DNA + VT S L R I ++ NQ PN PD N+LDLGFFNSIQSL + + TI+EL+ VE +F + DT+ + + +Q V+ + I G N +KLP+++K
Sbjct: 186 DYVHIDEKWFYLTRVKKKFYVYEDEVVAARFVKSKRFITKVMFLAAIARPRVELDGTIFDGKIGVWPFVEKMPARRNSKNRAKGTMITTPQSVDAKVYLNMVLNNVVPAIKSKFPPQSGVIIQQDNASPHKC------VTTSVLNSRGILGIEVKNQPPNSPDFNVLDLGFFNSIQSLQYQKSTRTIEELIDAVETSFYELPVDTVSKTFITLQKVMEKCIEIHGSNDYKLPHMKK 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53736.12732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53736.12732.1 >prot_H-elongata_contig53736.12732.1 ID=prot_H-elongata_contig53736.12732.1|Name=mRNA_H-elongata_contig53736.12732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp SQLLRHRILGQEVVLHLQARSAVLHLRRLRPDRAQSSAQKPHHEACCGAQback to top mRNA from alignment at H-elongata_contig53736:1228..1954+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53736.12732.1 ID=mRNA_H-elongata_contig53736.12732.1|Name=mRNA_H-elongata_contig53736.12732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=727bp|location=Sequence derived from alignment at H-elongata_contig53736:1228..1954+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53736:1228..1954+ >mRNA_H-elongata_contig53736.12732.1 ID=mRNA_H-elongata_contig53736.12732.1|Name=mRNA_H-elongata_contig53736.12732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig53736:1228..1954+ (Himanthalia elongata Himel1 dioecious)back to top |